Gvermi11616.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11616.t1
Unique NameGvermi11616.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length207
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1214884..1215591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog272134.KB731324_gene988
PFAMsMethyltransf_21
Max annot lvl1117|Cyanobacteria
Evalue7.18e-27
EggNOG OGs2B73M@1|root,3204M@2|Bacteria,1GIC7@1117|Cyanobacteria,1HGBG@1150|Oscillatoriales
DescriptionMethyltransferase domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11616Gvermi11616Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1214884..1215591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11616.t1Gvermi11616.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1214884..1215591 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11616.t1.stop1Gvermi11616.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1214884..1214886 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11616.t1.CDS1Gvermi11616.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1214884..1214952 -
Gvermi11616.t1.CDS2Gvermi11616.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1215040..1215591 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11616.t1.exon1Gvermi11616.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1214884..1214952 -
Gvermi11616.t1.exon2Gvermi11616.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1215040..1215591 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11616.t1.intron1Gvermi11616.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 1214953..1215039 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11616.t1.start1Gvermi11616.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1215589..1215591 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11616.t1 ID=Gvermi11616.t1|Name=Gvermi11616.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=207bp
MCSPLYSLKDKIVYTIGIGRNIKWDEAMMKQFGTVHHGWDPTPTAEDFFS
KRPIPNRFVFHRVGLASYDGDLKLKLPEGNADSYTVMEQNGVAQEGKVGT
FPVLKLQTMMEDNGHEQLAILKIDVEGAEFDVIRQWCLHSVDIAADQVLI
EFHARYFDKGPQMVREAIEDMDKLGFWLVHKTKLEYTFAKKNLIAKRGPE
VGVALL*
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spliced messenger RNA

>Gvermi11616.t1 ID=Gvermi11616.t1|Name=Gvermi11616.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=621bp|location=Sequence derived from alignment at ScGOVlb_3404:1214884..1215591- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGTAGCCCGCTGTACTCGCTCAAGGACAAAATCGTGTACACCATCGG
CATCGGGCGCAACATCAAGTGGGACGAAGCCATGATGAAGCAGTTTGGAA
CCGTACACCATGGCTGGGACCCTACCCCTACGGCTGAGGATTTTTTCTCG
AAACGCCCCATTCCGAATCGCTTTGTCTTCCACAGAGTCGGTCTGGCTTC
CTACGATGGCGACCTTAAACTCAAATTACCCGAGGGGAACGCCGACAGCT
ACACCGTCATGGAACAGAACGGGGTGGCTCAGGAGGGAAAGGTTGGCACC
TTTCCTGTGCTCAAGCTTCAGACCATGATGGAAGACAACGGTCATGAGCA
GTTGGCCATCCTCAAGATTGATGTGGAGGGCGCCGAGTTTGATGTCATTC
GCCAATGGTGCCTGCATTCCGTCGACATCGCCGCGGACCAAGTGCTCATC
GAGTTCCACGCCAGGTATTTTGACAAAGGGCCTCAAATGGTGCGTGAAGC
TATTGAAGATATGGACAAACTCGGATTCTGGCTGGTTCATAAAACCAAGC
TGGAGTACACGTTTGCAAAGAAGAACTTGATCGCGAAAAGAGGACCAGAG
GTGGGCGTTGCTCTCCTGTGA
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protein sequence of Gvermi11616.t1

>Gvermi11616.t1 ID=Gvermi11616.t1|Name=Gvermi11616.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=207bp
MCSPLYSLKDKIVYTIGIGRNIKWDEAMMKQFGTVHHGWDPTPTAEDFFS
KRPIPNRFVFHRVGLASYDGDLKLKLPEGNADSYTVMEQNGVAQEGKVGT
FPVLKLQTMMEDNGHEQLAILKIDVEGAEFDVIRQWCLHSVDIAADQVLI
EFHARYFDKGPQMVREAIEDMDKLGFWLVHKTKLEYTFAKKNLIAKRGPE
VGVALL*
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mRNA from alignment at ScGOVlb_3404:1214884..1215591-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11616.t1 ID=Gvermi11616.t1|Name=Gvermi11616.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=708bp|location=Sequence derived from alignment at ScGOVlb_3404:1214884..1215591- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTAGCCCGCTGTACTCGCTCAAGGACAAAATCGTGTACACCATCGG
CATCGGGCGCAACATCAAGTGGGACGAAGCCATGATGAAGCAGTTTGGAA
CCGTACACCATGGCTGGGACCCTACCCCTACGGCTGAGGATTTTTTCTCG
AAACGCCCCATTCCGAATCGCTTTGTCTTCCACAGAGTCGGTCTGGCTTC
CTACGATGGCGACCTTAAACTCAAATTACCCGAGGGGAACGCCGACAGCT
ACACCGTCATGGAACAGAACGGGGTGGCTCAGGAGGGAAAGGTTGGCACC
TTTCCTGTGCTCAAGCTTCAGACCATGATGGAAGACAACGGTCATGAGCA
GTTGGCCATCCTCAAGATTGATGTGGAGGGCGCCGAGTTTGATGTCATTC
GCCAATGGTGCCTGCATTCCGTCGACATCGCCGCGGACCAAGTGCTCATC
GAGTTCCACGCCAGGTATTTTGACAAAGGGCCTCAAATGGTGCGTGAAGC
TATTGAAGATATGGACAAACTCGGATTCTGGCTGGTTCATAAAACCAAGC
TGGTACGTTGCGCGACCAATTTATTCACTTTCCGTTTCGCTTCGCGTCTC
TAACTCGTTGAGTCTTGATTTTGTTCTTGTGTACTCCAGGAGTACACGTT
TGCAAAGAAGAACTTGATCGCGAAAAGAGGACCAGAGGTGGGCGTTGCTC
TCCTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1214884..1215591-

>Gvermi11616.t1 ID=Gvermi11616.t1|Name=Gvermi11616.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=621bp|location=Sequence derived from alignment at ScGOVlb_3404:1214884..1215591- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTGTAGCCCGCTGTACTCGCTCAAGGACAAAATCGTGTACACCATCGG
CATCGGGCGCAACATCAAGTGGGACGAAGCCATGATGAAGCAGTTTGGAA
CCGTACACCATGGCTGGGACCCTACCCCTACGGCTGAGGATTTTTTCTCG
AAACGCCCCATTCCGAATCGCTTTGTCTTCCACAGAGTCGGTCTGGCTTC
CTACGATGGCGACCTTAAACTCAAATTACCCGAGGGGAACGCCGACAGCT
ACACCGTCATGGAACAGAACGGGGTGGCTCAGGAGGGAAAGGTTGGCACC
TTTCCTGTGCTCAAGCTTCAGACCATGATGGAAGACAACGGTCATGAGCA
GTTGGCCATCCTCAAGATTGATGTGGAGGGCGCCGAGTTTGATGTCATTC
GCCAATGGTGCCTGCATTCCGTCGACATCGCCGCGGACCAAGTGCTCATC
GAGTTCCACGCCAGGTATTTTGACAAAGGGCCTCAAATGGTGCGTGAAGC
TATTGAAGATATGGACAAACTCGGATTCTGGCTGGTTCATAAAACCAAGC
TGGAGTACACGTTTGCAAAGAAGAACTTGATCGCGAAAAGAGGACCAGAG
GTGGGCGTTGCTCTCCTGTGA
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