Gvermi11612.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11612.t1
Unique NameGvermi11612.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1138755..1139477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11612Gvermi11612Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1138755..1139477 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11612.t1.start1Gvermi11612.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1138755..1138757 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11612.t1.CDS1Gvermi11612.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1138755..1139477 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11612.t1.exon1Gvermi11612.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1138755..1139477 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11612.t1.stop1Gvermi11612.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1139475..1139477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11612.t1Gvermi11612.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1138755..1139477 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11612.t1 ID=Gvermi11612.t1|Name=Gvermi11612.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=241bp
MAPRSLSATCDGWHTFNATIFDPVRIAAIAHLRYAPMRERGAIIMKATHP
AEYRVSHHAASGLWDLVPTVNAGAAQHVSPSIVDPALHVSAPSSDSPKRQ
HNSVPDSLSMNQAVMSALKKSATHRRFAITMGSNRHFMLHPSATSSRHFV
LCELHAGPSIISSSPRTAPHPSQFEHNHDDENDDGVQVASFTCDGVWKRS
YSISVERLIPDELVVFCFWLVNLMNRRANRADPAHVHGSA*
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spliced messenger RNA

>Gvermi11612.t1 ID=Gvermi11612.t1|Name=Gvermi11612.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=723bp|location=Sequence derived from alignment at ScGOVlb_3404:1138755..1139477+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCCGCTCGCTCTCCGCCACCTGCGATGGGTGGCACACCTTCAA
CGCCACCATCTTTGACCCTGTGCGCATCGCCGCCATCGCTCACCTGCGCT
ACGCGCCCATGCGCGAACGCGGTGCCATCATCATGAAGGCCACACACCCC
GCAGAGTACCGCGTCTCGCACCACGCCGCCTCCGGTCTGTGGGACCTGGT
GCCCACCGTTAATGCCGGCGCTGCGCAGCATGTCTCGCCGTCCATCGTCG
ACCCTGCTCTTCATGTGTCTGCCCCCTCGTCGGACAGCCCCAAGCGCCAG
CACAACTCCGTCCCCGACTCCCTGTCTATGAACCAAGCAGTCATGTCCGC
CCTCAAGAAAAGTGCCACGCACAGACGCTTCGCTATCACTATGGGTTCGA
ATCGCCACTTCATGCTGCATCCGAGCGCCACTTCCAGCCGCCATTTTGTT
CTGTGTGAGCTGCATGCAGGGCCCTCCATCATTTCGTCCAGCCCGAGGAC
CGCCCCGCACCCCTCACAGTTTGAACATAACCATGACGACGAGAATGATG
ATGGCGTGCAGGTGGCTTCGTTCACTTGTGATGGCGTTTGGAAGAGGAGT
TACAGCATCTCCGTAGAACGACTCATTCCTGACGAGCTGGTCGTGTTCTG
TTTCTGGCTGGTTAACCTCATGAATAGGAGGGCCAATCGTGCTGACCCGG
CGCATGTCCATGGATCCGCTTGA
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protein sequence of Gvermi11612.t1

>Gvermi11612.t1 ID=Gvermi11612.t1|Name=Gvermi11612.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=241bp
MAPRSLSATCDGWHTFNATIFDPVRIAAIAHLRYAPMRERGAIIMKATHP
AEYRVSHHAASGLWDLVPTVNAGAAQHVSPSIVDPALHVSAPSSDSPKRQ
HNSVPDSLSMNQAVMSALKKSATHRRFAITMGSNRHFMLHPSATSSRHFV
LCELHAGPSIISSSPRTAPHPSQFEHNHDDENDDGVQVASFTCDGVWKRS
YSISVERLIPDELVVFCFWLVNLMNRRANRADPAHVHGSA*
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mRNA from alignment at ScGOVlb_3404:1138755..1139477+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11612.t1 ID=Gvermi11612.t1|Name=Gvermi11612.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=723bp|location=Sequence derived from alignment at ScGOVlb_3404:1138755..1139477+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCCCGCTCGCTCTCCGCCACCTGCGATGGGTGGCACACCTTCAA
CGCCACCATCTTTGACCCTGTGCGCATCGCCGCCATCGCTCACCTGCGCT
ACGCGCCCATGCGCGAACGCGGTGCCATCATCATGAAGGCCACACACCCC
GCAGAGTACCGCGTCTCGCACCACGCCGCCTCCGGTCTGTGGGACCTGGT
GCCCACCGTTAATGCCGGCGCTGCGCAGCATGTCTCGCCGTCCATCGTCG
ACCCTGCTCTTCATGTGTCTGCCCCCTCGTCGGACAGCCCCAAGCGCCAG
CACAACTCCGTCCCCGACTCCCTGTCTATGAACCAAGCAGTCATGTCCGC
CCTCAAGAAAAGTGCCACGCACAGACGCTTCGCTATCACTATGGGTTCGA
ATCGCCACTTCATGCTGCATCCGAGCGCCACTTCCAGCCGCCATTTTGTT
CTGTGTGAGCTGCATGCAGGGCCCTCCATCATTTCGTCCAGCCCGAGGAC
CGCCCCGCACCCCTCACAGTTTGAACATAACCATGACGACGAGAATGATG
ATGGCGTGCAGGTGGCTTCGTTCACTTGTGATGGCGTTTGGAAGAGGAGT
TACAGCATCTCCGTAGAACGACTCATTCCTGACGAGCTGGTCGTGTTCTG
TTTCTGGCTGGTTAACCTCATGAATAGGAGGGCCAATCGTGCTGACCCGG
CGCATGTCCATGGATCCGCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1138755..1139477+

>Gvermi11612.t1 ID=Gvermi11612.t1|Name=Gvermi11612.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=723bp|location=Sequence derived from alignment at ScGOVlb_3404:1138755..1139477+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCCCGCTCGCTCTCCGCCACCTGCGATGGGTGGCACACCTTCAA
CGCCACCATCTTTGACCCTGTGCGCATCGCCGCCATCGCTCACCTGCGCT
ACGCGCCCATGCGCGAACGCGGTGCCATCATCATGAAGGCCACACACCCC
GCAGAGTACCGCGTCTCGCACCACGCCGCCTCCGGTCTGTGGGACCTGGT
GCCCACCGTTAATGCCGGCGCTGCGCAGCATGTCTCGCCGTCCATCGTCG
ACCCTGCTCTTCATGTGTCTGCCCCCTCGTCGGACAGCCCCAAGCGCCAG
CACAACTCCGTCCCCGACTCCCTGTCTATGAACCAAGCAGTCATGTCCGC
CCTCAAGAAAAGTGCCACGCACAGACGCTTCGCTATCACTATGGGTTCGA
ATCGCCACTTCATGCTGCATCCGAGCGCCACTTCCAGCCGCCATTTTGTT
CTGTGTGAGCTGCATGCAGGGCCCTCCATCATTTCGTCCAGCCCGAGGAC
CGCCCCGCACCCCTCACAGTTTGAACATAACCATGACGACGAGAATGATG
ATGGCGTGCAGGTGGCTTCGTTCACTTGTGATGGCGTTTGGAAGAGGAGT
TACAGCATCTCCGTAGAACGACTCATTCCTGACGAGCTGGTCGTGTTCTG
TTTCTGGCTGGTTAACCTCATGAATAGGAGGGCCAATCGTGCTGACCCGG
CGCATGTCCATGGATCCGCTTGA
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