Gvermi11608.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11608.t1
Unique Name	Gvermi11608.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	480

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:1125488..1126927 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005704461.1
PFAMs	Aa_trans
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14209
KEGG TC	2.A.18.8
KEGG Pathway	ko04138,map04138
Evalue	4.06e-96
EggNOG OGs	COG0814@1\|root,KOG1304@2759\|Eukaryota
Description	amino acid transmembrane transporter activity
COG category	E
BRITE	ko00000,ko00001,ko02000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11608	Gvermi11608	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 1125488..1126927 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11608.t1.start1	Gvermi11608.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 1125488..1125490 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11608.t1.CDS1	Gvermi11608.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 1125488..1126927 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11608.t1.exon1	Gvermi11608.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 1125488..1126927 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11608.t1.stop1	Gvermi11608.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 1126925..1126927 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11608.t1	Gvermi11608.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 1125488..1126927 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:1125488..1126927+
coding sequence from alignment at ScGOVlb_3404:1125488..1126927+

mRNA sequence

>Gvermi11608.t1 ID=Gvermi11608.t1|Name=Gvermi11608.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=480bp
MHDEPLSPSRPAAADSALIAESEQYSLLTDIGNMLKAFIGINFLYVAYAF
SNAGLWRGTIALIVITYITEHCCLLLIDVKNASPLALPTSASEYVLPAEQ
FDRDNSTLETLELTPEEDLEESGENQHSHRHVSYGDIARAVGGRSVGAVI
NFAVVLTQFGFCVGYLIFLSQTLHDLLKSTHAVMWFVLVPLPALLAINLL
SSIRSLGPFSIVANIALFIGFISVVTFLGKHFQWKPSNPPLTSFPLFFGQ
MTAALEGIGLVVPVQASMKTPHRFPMVLRIALVILSAVLMVMGILGFASF
GEGTRSIILLNFGATPIVAAVKIVLMIGILFTYPLQIVPVFHYFERVLLP
RELIELQSDSQPDVSSSTISAMLSSGLFVCDWRRIGIRYLITFCTAAVAV
LAGGSFGLFQSLVGSVGGTILAYCAPPVLYNMAFKDSMSRWTRYKNFALL
LFGVLGGILGAYTSVKEIMEIHRGNSKPI*

spliced messenger RNA

>Gvermi11608.t1 ID=Gvermi11608.t1|Name=Gvermi11608.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at ScGOVlb_3404:1125488..1126927+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATGATGAACCACTATCGCCATCGCGGCCTGCGGCGGCTGACTCAGC
GCTTATCGCGGAGAGTGAACAATACTCCCTGCTTACTGACATTGGCAACA
TGCTGAAAGCCTTCATTGGCATTAACTTTTTGTATGTGGCGTACGCGTTT
TCCAATGCCGGCTTGTGGCGTGGTACTATTGCACTCATTGTCATCACGTA
CATTACCGAGCATTGTTGCTTATTGCTTATCGATGTGAAGAATGCTTCGC
CGCTTGCTTTGCCCACTTCTGCATCCGAGTATGTTCTGCCCGCTGAACAA
TTTGACAGAGACAACTCCACTTTAGAAACACTCGAATTGACCCCCGAAGA
AGACCTGGAAGAATCAGGCGAGAACCAACACTCTCATCGTCATGTCTCGT
ACGGAGACATAGCAAGAGCTGTGGGAGGACGCTCTGTCGGTGCAGTCATT
AACTTTGCTGTCGTGCTTACTCAGTTTGGCTTTTGCGTCGGCTATCTTAT
CTTTTTGTCCCAAACTCTTCACGACCTCCTCAAGTCCACGCATGCGGTGA
TGTGGTTCGTTCTTGTTCCATTGCCAGCTTTATTGGCAATTAATCTGCTT
TCTTCCATTCGCTCGCTGGGGCCTTTCTCCATTGTCGCCAACATTGCCCT
TTTCATAGGCTTTATATCTGTTGTCACATTTCTTGGAAAGCATTTCCAGT
GGAAACCCTCAAACCCGCCTCTAACAAGTTTCCCTCTATTCTTTGGACAA
ATGACAGCAGCACTGGAGGGAATTGGTTTGGTTGTTCCTGTTCAGGCATC
CATGAAAACTCCTCATCGTTTTCCAATGGTATTACGAATTGCACTCGTCA
TTCTGTCCGCCGTTCTTATGGTCATGGGCATTTTAGGGTTTGCAAGCTTT
GGCGAAGGTACCAGATCAATTATTTTACTCAACTTTGGTGCCACCCCTAT
CGTTGCTGCCGTCAAGATTGTGCTGATGATTGGAATCTTGTTCACTTATC
CGTTGCAAATAGTACCCGTTTTCCATTATTTTGAGCGTGTTCTTCTCCCA
AGAGAATTGATCGAGTTGCAGTCTGACAGCCAGCCAGATGTCTCTTCTTC
TACAATTTCCGCGATGTTATCTTCCGGTTTGTTCGTCTGCGACTGGCGCC
GAATTGGTATCAGGTACCTGATTACATTCTGCACGGCTGCGGTTGCCGTA
CTGGCGGGCGGGAGTTTCGGTCTGTTTCAGAGCTTGGTGGGGTCCGTTGG
AGGTACAATACTGGCGTATTGTGCCCCACCAGTGCTATACAATATGGCCT
TCAAAGACAGCATGTCCAGATGGACAAGATACAAGAACTTCGCATTGCTT
TTATTTGGCGTTCTTGGCGGTATTCTCGGAGCATACACGTCTGTGAAAGA
AATCATGGAGATACACAGGGGAAATTCAAAACCAATTTGA

protein sequence of Gvermi11608.t1

>Gvermi11608.t1 ID=Gvermi11608.t1|Name=Gvermi11608.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=480bp
MHDEPLSPSRPAAADSALIAESEQYSLLTDIGNMLKAFIGINFLYVAYAF
SNAGLWRGTIALIVITYITEHCCLLLIDVKNASPLALPTSASEYVLPAEQ
FDRDNSTLETLELTPEEDLEESGENQHSHRHVSYGDIARAVGGRSVGAVI
NFAVVLTQFGFCVGYLIFLSQTLHDLLKSTHAVMWFVLVPLPALLAINLL
SSIRSLGPFSIVANIALFIGFISVVTFLGKHFQWKPSNPPLTSFPLFFGQ
MTAALEGIGLVVPVQASMKTPHRFPMVLRIALVILSAVLMVMGILGFASF
GEGTRSIILLNFGATPIVAAVKIVLMIGILFTYPLQIVPVFHYFERVLLP
RELIELQSDSQPDVSSSTISAMLSSGLFVCDWRRIGIRYLITFCTAAVAV
LAGGSFGLFQSLVGSVGGTILAYCAPPVLYNMAFKDSMSRWTRYKNFALL
LFGVLGGILGAYTSVKEIMEIHRGNSKPI*

mRNA from alignment at ScGOVlb_3404:1125488..1126927+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11608.t1 ID=Gvermi11608.t1|Name=Gvermi11608.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at ScGOVlb_3404:1125488..1126927+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATGATGAACCACTATCGCCATCGCGGCCTGCGGCGGCTGACTCAGC
GCTTATCGCGGAGAGTGAACAATACTCCCTGCTTACTGACATTGGCAACA
TGCTGAAAGCCTTCATTGGCATTAACTTTTTGTATGTGGCGTACGCGTTT
TCCAATGCCGGCTTGTGGCGTGGTACTATTGCACTCATTGTCATCACGTA
CATTACCGAGCATTGTTGCTTATTGCTTATCGATGTGAAGAATGCTTCGC
CGCTTGCTTTGCCCACTTCTGCATCCGAGTATGTTCTGCCCGCTGAACAA
TTTGACAGAGACAACTCCACTTTAGAAACACTCGAATTGACCCCCGAAGA
AGACCTGGAAGAATCAGGCGAGAACCAACACTCTCATCGTCATGTCTCGT
ACGGAGACATAGCAAGAGCTGTGGGAGGACGCTCTGTCGGTGCAGTCATT
AACTTTGCTGTCGTGCTTACTCAGTTTGGCTTTTGCGTCGGCTATCTTAT
CTTTTTGTCCCAAACTCTTCACGACCTCCTCAAGTCCACGCATGCGGTGA
TGTGGTTCGTTCTTGTTCCATTGCCAGCTTTATTGGCAATTAATCTGCTT
TCTTCCATTCGCTCGCTGGGGCCTTTCTCCATTGTCGCCAACATTGCCCT
TTTCATAGGCTTTATATCTGTTGTCACATTTCTTGGAAAGCATTTCCAGT
GGAAACCCTCAAACCCGCCTCTAACAAGTTTCCCTCTATTCTTTGGACAA
ATGACAGCAGCACTGGAGGGAATTGGTTTGGTTGTTCCTGTTCAGGCATC
CATGAAAACTCCTCATCGTTTTCCAATGGTATTACGAATTGCACTCGTCA
TTCTGTCCGCCGTTCTTATGGTCATGGGCATTTTAGGGTTTGCAAGCTTT
GGCGAAGGTACCAGATCAATTATTTTACTCAACTTTGGTGCCACCCCTAT
CGTTGCTGCCGTCAAGATTGTGCTGATGATTGGAATCTTGTTCACTTATC
CGTTGCAAATAGTACCCGTTTTCCATTATTTTGAGCGTGTTCTTCTCCCA
AGAGAATTGATCGAGTTGCAGTCTGACAGCCAGCCAGATGTCTCTTCTTC
TACAATTTCCGCGATGTTATCTTCCGGTTTGTTCGTCTGCGACTGGCGCC
GAATTGGTATCAGGTACCTGATTACATTCTGCACGGCTGCGGTTGCCGTA
CTGGCGGGCGGGAGTTTCGGTCTGTTTCAGAGCTTGGTGGGGTCCGTTGG
AGGTACAATACTGGCGTATTGTGCCCCACCAGTGCTATACAATATGGCCT
TCAAAGACAGCATGTCCAGATGGACAAGATACAAGAACTTCGCATTGCTT
TTATTTGGCGTTCTTGGCGGTATTCTCGGAGCATACACGTCTGTGAAAGA
AATCATGGAGATACACAGGGGAAATTCAAAACCAATTTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:1125488..1126927+

>Gvermi11608.t1 ID=Gvermi11608.t1|Name=Gvermi11608.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1440bp|location=Sequence derived from alignment at ScGOVlb_3404:1125488..1126927+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCATGATGAACCACTATCGCCATCGCGGCCTGCGGCGGCTGACTCAGC
GCTTATCGCGGAGAGTGAACAATACTCCCTGCTTACTGACATTGGCAACA
TGCTGAAAGCCTTCATTGGCATTAACTTTTTGTATGTGGCGTACGCGTTT
TCCAATGCCGGCTTGTGGCGTGGTACTATTGCACTCATTGTCATCACGTA
CATTACCGAGCATTGTTGCTTATTGCTTATCGATGTGAAGAATGCTTCGC
CGCTTGCTTTGCCCACTTCTGCATCCGAGTATGTTCTGCCCGCTGAACAA
TTTGACAGAGACAACTCCACTTTAGAAACACTCGAATTGACCCCCGAAGA
AGACCTGGAAGAATCAGGCGAGAACCAACACTCTCATCGTCATGTCTCGT
ACGGAGACATAGCAAGAGCTGTGGGAGGACGCTCTGTCGGTGCAGTCATT
AACTTTGCTGTCGTGCTTACTCAGTTTGGCTTTTGCGTCGGCTATCTTAT
CTTTTTGTCCCAAACTCTTCACGACCTCCTCAAGTCCACGCATGCGGTGA
TGTGGTTCGTTCTTGTTCCATTGCCAGCTTTATTGGCAATTAATCTGCTT
TCTTCCATTCGCTCGCTGGGGCCTTTCTCCATTGTCGCCAACATTGCCCT
TTTCATAGGCTTTATATCTGTTGTCACATTTCTTGGAAAGCATTTCCAGT
GGAAACCCTCAAACCCGCCTCTAACAAGTTTCCCTCTATTCTTTGGACAA
ATGACAGCAGCACTGGAGGGAATTGGTTTGGTTGTTCCTGTTCAGGCATC
CATGAAAACTCCTCATCGTTTTCCAATGGTATTACGAATTGCACTCGTCA
TTCTGTCCGCCGTTCTTATGGTCATGGGCATTTTAGGGTTTGCAAGCTTT
GGCGAAGGTACCAGATCAATTATTTTACTCAACTTTGGTGCCACCCCTAT
CGTTGCTGCCGTCAAGATTGTGCTGATGATTGGAATCTTGTTCACTTATC
CGTTGCAAATAGTACCCGTTTTCCATTATTTTGAGCGTGTTCTTCTCCCA
AGAGAATTGATCGAGTTGCAGTCTGACAGCCAGCCAGATGTCTCTTCTTC
TACAATTTCCGCGATGTTATCTTCCGGTTTGTTCGTCTGCGACTGGCGCC
GAATTGGTATCAGGTACCTGATTACATTCTGCACGGCTGCGGTTGCCGTA
CTGGCGGGCGGGAGTTTCGGTCTGTTTCAGAGCTTGGTGGGGTCCGTTGG
AGGTACAATACTGGCGTATTGTGCCCCACCAGTGCTATACAATATGGCCT
TCAAAGACAGCATGTCCAGATGGACAAGATACAAGAACTTCGCATTGCTT
TTATTTGGCGTTCTTGGCGGTATTCTCGGAGCATACACGTCTGTGAAAGA
AATCATGGAGATACACAGGGGAAATTCAAAACCAATTTGA