Gvermi11606.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11606.t1
Unique NameGvermi11606.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length462
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1122111..1123496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704711.1
Preferred nameSAM50
PFAMsBac_surface_Ag,POTRA
Max annot lvl2759|Eukaryota
KEGG koko:K07277
KEGG TC1.B.33
GOsGO:0001401,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019867,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042407,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045040,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072655,GO:0072657,GO:0090150,GO:0090151,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805
Evalue1.92e-62
EggNOG OGsCOG4775@1|root,KOG2602@2759|Eukaryota
Descriptionsorting and assembly machinery component
COG categoryM
BRITEko00000,ko02000,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11606Gvermi11606Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1122111..1123496 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11606.t1.start1Gvermi11606.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1122111..1122113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11606.t1.CDS1Gvermi11606.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1122111..1123496 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11606.t1.exon1Gvermi11606.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1122111..1123496 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11606.t1.stop1Gvermi11606.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1123494..1123496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11606.t1Gvermi11606.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1122111..1123496 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11606.t1 ID=Gvermi11606.t1|Name=Gvermi11606.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=462bp
MGDPSSSSSQSPSIEELLATKLSIISYSVHGVNRTKEKVIHKVLQPVLST
GGDFEGVINDVSTAVDRLRSTNCYKGIDAFIDHQHDKTASVKFTFTEKSS
VQLTTGTSIDTSSERDASMEGALSIRNLLGAADTLRFTLAWIGATSTSRS
FSKNPSNSFSASYSRPFVLGLSSSMFSNVSYSQLNHSEASSYNLVTRLAD
CGLHTILGTFTLASVWRNLTHVQPTASSLIRDDAKDTWKTSLRHQVQMDL
RDDMAMPNQGIFASLTHEHTLPFGDIQLSTVQTAFQSHLPLVADAVLSFS
TRFGAHFSKSRVQTPDRFFVGGANSLRGFRTRGVGPMDGKDSIGGDVFYT
TSMMLSLPMPANSLLAQLFNARLHVFVNGGDVFEMTDMKQAITDLKGHGL
REAATKAYEGVYSGIRVAAGVGVAFDTSVGRIELNLCNVLKSCLSDQPQI
GFQFGVSQSFL*
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spliced messenger RNA

>Gvermi11606.t1 ID=Gvermi11606.t1|Name=Gvermi11606.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1386bp|location=Sequence derived from alignment at ScGOVlb_3404:1122111..1123496+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGATCCGTCATCATCTTCGTCCCAATCGCCTTCTATTGAAGAGCT
TCTGGCAACAAAACTTTCAATCATATCCTATTCAGTCCACGGAGTGAACC
GAACCAAAGAAAAAGTTATTCACAAAGTCCTGCAGCCTGTTTTATCGACA
GGTGGTGACTTCGAAGGTGTTATAAACGATGTGTCCACTGCTGTTGATCG
CTTAAGATCTACAAATTGCTACAAGGGAATTGACGCTTTCATTGATCACC
AACATGATAAAACCGCGTCTGTCAAGTTTACGTTTACGGAGAAATCATCT
GTTCAACTTACAACTGGTACTTCGATTGATACTTCCAGTGAACGTGATGC
TTCAATGGAAGGCGCTTTAAGTATTCGAAATTTACTTGGAGCTGCCGATA
CGCTACGGTTTACATTGGCATGGATTGGGGCAACGTCTACATCAAGGTCA
TTTTCGAAGAACCCGTCCAATTCATTTAGCGCATCGTACAGCAGACCGTT
TGTACTTGGTTTAAGTTCGTCCATGTTTTCAAATGTTTCGTATTCACAGT
TAAATCATTCAGAAGCTTCTAGCTACAATCTGGTCACAAGACTTGCGGAT
TGCGGGTTGCATACTATTCTGGGTACGTTTACGTTAGCTTCCGTATGGAG
GAACCTTACGCATGTTCAACCAACTGCATCTTCTTTAATCCGCGATGATG
CCAAGGATACATGGAAAACGTCTCTTAGACATCAGGTGCAAATGGATTTG
AGAGATGACATGGCTATGCCAAATCAAGGTATATTTGCTTCTCTGACACA
TGAGCATACTTTACCGTTCGGAGATATTCAGCTGTCAACCGTACAAACAG
CCTTTCAATCCCACTTACCCCTTGTGGCGGATGCAGTATTGTCTTTTTCT
ACCCGATTTGGTGCTCACTTCTCGAAAAGTCGTGTCCAGACTCCAGACCG
CTTCTTTGTAGGTGGTGCCAATTCGTTACGTGGGTTCAGAACTCGAGGCG
TTGGTCCAATGGACGGGAAGGATTCGATTGGCGGGGATGTCTTTTACACG
ACAAGTATGATGCTGTCGCTTCCTATGCCTGCCAACTCGTTGCTCGCGCA
ATTGTTTAATGCGAGATTGCATGTGTTTGTGAATGGTGGTGATGTGTTTG
AAATGACTGATATGAAGCAAGCGATAACCGATTTGAAGGGTCATGGTTTG
CGGGAAGCTGCAACGAAGGCTTACGAGGGAGTTTATAGTGGAATACGAGT
TGCTGCTGGTGTTGGTGTGGCCTTTGACACTTCCGTTGGGCGAATCGAAC
TAAACCTTTGTAATGTTCTCAAGAGTTGTTTGTCTGATCAACCTCAGATT
GGATTTCAGTTCGGAGTCAGTCAATCTTTCTTGTAA
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protein sequence of Gvermi11606.t1

>Gvermi11606.t1 ID=Gvermi11606.t1|Name=Gvermi11606.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=462bp
MGDPSSSSSQSPSIEELLATKLSIISYSVHGVNRTKEKVIHKVLQPVLST
GGDFEGVINDVSTAVDRLRSTNCYKGIDAFIDHQHDKTASVKFTFTEKSS
VQLTTGTSIDTSSERDASMEGALSIRNLLGAADTLRFTLAWIGATSTSRS
FSKNPSNSFSASYSRPFVLGLSSSMFSNVSYSQLNHSEASSYNLVTRLAD
CGLHTILGTFTLASVWRNLTHVQPTASSLIRDDAKDTWKTSLRHQVQMDL
RDDMAMPNQGIFASLTHEHTLPFGDIQLSTVQTAFQSHLPLVADAVLSFS
TRFGAHFSKSRVQTPDRFFVGGANSLRGFRTRGVGPMDGKDSIGGDVFYT
TSMMLSLPMPANSLLAQLFNARLHVFVNGGDVFEMTDMKQAITDLKGHGL
REAATKAYEGVYSGIRVAAGVGVAFDTSVGRIELNLCNVLKSCLSDQPQI
GFQFGVSQSFL*
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mRNA from alignment at ScGOVlb_3404:1122111..1123496+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11606.t1 ID=Gvermi11606.t1|Name=Gvermi11606.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1386bp|location=Sequence derived from alignment at ScGOVlb_3404:1122111..1123496+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGATCCGTCATCATCTTCGTCCCAATCGCCTTCTATTGAAGAGCT
TCTGGCAACAAAACTTTCAATCATATCCTATTCAGTCCACGGAGTGAACC
GAACCAAAGAAAAAGTTATTCACAAAGTCCTGCAGCCTGTTTTATCGACA
GGTGGTGACTTCGAAGGTGTTATAAACGATGTGTCCACTGCTGTTGATCG
CTTAAGATCTACAAATTGCTACAAGGGAATTGACGCTTTCATTGATCACC
AACATGATAAAACCGCGTCTGTCAAGTTTACGTTTACGGAGAAATCATCT
GTTCAACTTACAACTGGTACTTCGATTGATACTTCCAGTGAACGTGATGC
TTCAATGGAAGGCGCTTTAAGTATTCGAAATTTACTTGGAGCTGCCGATA
CGCTACGGTTTACATTGGCATGGATTGGGGCAACGTCTACATCAAGGTCA
TTTTCGAAGAACCCGTCCAATTCATTTAGCGCATCGTACAGCAGACCGTT
TGTACTTGGTTTAAGTTCGTCCATGTTTTCAAATGTTTCGTATTCACAGT
TAAATCATTCAGAAGCTTCTAGCTACAATCTGGTCACAAGACTTGCGGAT
TGCGGGTTGCATACTATTCTGGGTACGTTTACGTTAGCTTCCGTATGGAG
GAACCTTACGCATGTTCAACCAACTGCATCTTCTTTAATCCGCGATGATG
CCAAGGATACATGGAAAACGTCTCTTAGACATCAGGTGCAAATGGATTTG
AGAGATGACATGGCTATGCCAAATCAAGGTATATTTGCTTCTCTGACACA
TGAGCATACTTTACCGTTCGGAGATATTCAGCTGTCAACCGTACAAACAG
CCTTTCAATCCCACTTACCCCTTGTGGCGGATGCAGTATTGTCTTTTTCT
ACCCGATTTGGTGCTCACTTCTCGAAAAGTCGTGTCCAGACTCCAGACCG
CTTCTTTGTAGGTGGTGCCAATTCGTTACGTGGGTTCAGAACTCGAGGCG
TTGGTCCAATGGACGGGAAGGATTCGATTGGCGGGGATGTCTTTTACACG
ACAAGTATGATGCTGTCGCTTCCTATGCCTGCCAACTCGTTGCTCGCGCA
ATTGTTTAATGCGAGATTGCATGTGTTTGTGAATGGTGGTGATGTGTTTG
AAATGACTGATATGAAGCAAGCGATAACCGATTTGAAGGGTCATGGTTTG
CGGGAAGCTGCAACGAAGGCTTACGAGGGAGTTTATAGTGGAATACGAGT
TGCTGCTGGTGTTGGTGTGGCCTTTGACACTTCCGTTGGGCGAATCGAAC
TAAACCTTTGTAATGTTCTCAAGAGTTGTTTGTCTGATCAACCTCAGATT
GGATTTCAGTTCGGAGTCAGTCAATCTTTCTTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1122111..1123496+

>Gvermi11606.t1 ID=Gvermi11606.t1|Name=Gvermi11606.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1386bp|location=Sequence derived from alignment at ScGOVlb_3404:1122111..1123496+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGCGATCCGTCATCATCTTCGTCCCAATCGCCTTCTATTGAAGAGCT
TCTGGCAACAAAACTTTCAATCATATCCTATTCAGTCCACGGAGTGAACC
GAACCAAAGAAAAAGTTATTCACAAAGTCCTGCAGCCTGTTTTATCGACA
GGTGGTGACTTCGAAGGTGTTATAAACGATGTGTCCACTGCTGTTGATCG
CTTAAGATCTACAAATTGCTACAAGGGAATTGACGCTTTCATTGATCACC
AACATGATAAAACCGCGTCTGTCAAGTTTACGTTTACGGAGAAATCATCT
GTTCAACTTACAACTGGTACTTCGATTGATACTTCCAGTGAACGTGATGC
TTCAATGGAAGGCGCTTTAAGTATTCGAAATTTACTTGGAGCTGCCGATA
CGCTACGGTTTACATTGGCATGGATTGGGGCAACGTCTACATCAAGGTCA
TTTTCGAAGAACCCGTCCAATTCATTTAGCGCATCGTACAGCAGACCGTT
TGTACTTGGTTTAAGTTCGTCCATGTTTTCAAATGTTTCGTATTCACAGT
TAAATCATTCAGAAGCTTCTAGCTACAATCTGGTCACAAGACTTGCGGAT
TGCGGGTTGCATACTATTCTGGGTACGTTTACGTTAGCTTCCGTATGGAG
GAACCTTACGCATGTTCAACCAACTGCATCTTCTTTAATCCGCGATGATG
CCAAGGATACATGGAAAACGTCTCTTAGACATCAGGTGCAAATGGATTTG
AGAGATGACATGGCTATGCCAAATCAAGGTATATTTGCTTCTCTGACACA
TGAGCATACTTTACCGTTCGGAGATATTCAGCTGTCAACCGTACAAACAG
CCTTTCAATCCCACTTACCCCTTGTGGCGGATGCAGTATTGTCTTTTTCT
ACCCGATTTGGTGCTCACTTCTCGAAAAGTCGTGTCCAGACTCCAGACCG
CTTCTTTGTAGGTGGTGCCAATTCGTTACGTGGGTTCAGAACTCGAGGCG
TTGGTCCAATGGACGGGAAGGATTCGATTGGCGGGGATGTCTTTTACACG
ACAAGTATGATGCTGTCGCTTCCTATGCCTGCCAACTCGTTGCTCGCGCA
ATTGTTTAATGCGAGATTGCATGTGTTTGTGAATGGTGGTGATGTGTTTG
AAATGACTGATATGAAGCAAGCGATAACCGATTTGAAGGGTCATGGTTTG
CGGGAAGCTGCAACGAAGGCTTACGAGGGAGTTTATAGTGGAATACGAGT
TGCTGCTGGTGTTGGTGTGGCCTTTGACACTTCCGTTGGGCGAATCGAAC
TAAACCTTTGTAATGTTCTCAAGAGTTGTTTGTCTGATCAACCTCAGATT
GGATTTCAGTTCGGAGTCAGTCAATCTTTCTTGTAA
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