Gvermi11605.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11605.t1
Unique NameGvermi11605.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length547
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1119814..1121591 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11605Gvermi11605Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1119814..1121591 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11605.t1Gvermi11605.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1119814..1121591 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11605.t1.stop1Gvermi11605.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1119814..1119816 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11605.t1.CDS1Gvermi11605.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1119814..1120413 -
Gvermi11605.t1.CDS2Gvermi11605.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1120492..1120644 -
Gvermi11605.t1.CDS3Gvermi11605.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1120704..1121591 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11605.t1.exon1Gvermi11605.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1119814..1120413 -
Gvermi11605.t1.exon2Gvermi11605.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1120492..1120644 -
Gvermi11605.t1.exon3Gvermi11605.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1120704..1121591 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11605.t1.intron1Gvermi11605.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 1120414..1120491 -
Gvermi11605.t1.intron2Gvermi11605.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 1120645..1120703 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11605.t1.start1Gvermi11605.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1121589..1121591 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11605.t1 ID=Gvermi11605.t1|Name=Gvermi11605.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=547bp
MVTAVRRRPLATSSNTIFRAPGNPPSPEPSIVASKAKYVFFIVLISFLVS
IAYIMRSKQPNSVPHKALTSNIPSDDEDILRASRIEAEDYVHPEYRARGV
ACMPSVTRLQDGTQVEYVSNAVKSWRLATNQSVNLRQLTVFDMDLEPAAN
PFWLKTVFQTSNAKLPSWLKLAQRERPPIAHRKLTLGDDEKRVKWRSKEA
QDYAEVLRRCTEENDAEYIVIVQDDVLFREQMKNVIEWCDRHLQDSFTTN
KHGRPKHIRMCSASLFDLSNGEEDAHELRSSNMVARIWKREFVDSMMQKS
EEKNSCDGAKPCQTSWSYLIPPCQSKREYYYLTVQVYVDSRFYTIKTESS
PTNMDWSEEETKQIAGNLRRIVHMFCEHPHVQNEQISGAFNLMHGDLKHQ
LTIARLQLISREARRKAATLHKGLYVTKEEAQATIEEILSNGFQTPMHVA
IELRKRGYEGKWIRPRYVRHLVRHILRKKKEKEQLHAKLRGAGKGVPDRL
GRPVKSRAEIMCEMLPDLCNQKPTDGIDDCDDVFGAELKSLEDAWY*
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spliced messenger RNA

>Gvermi11605.t1 ID=Gvermi11605.t1|Name=Gvermi11605.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1641bp|location=Sequence derived from alignment at ScGOVlb_3404:1119814..1121591- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACGGCTGTTCGTCGCCGACCCTTGGCAACTTCGTCAAACACGAT
CTTTCGCGCACCCGGTAACCCACCTTCTCCTGAGCCGTCTATAGTCGCAT
CTAAAGCTAAATATGTGTTTTTCATTGTTTTAATTTCGTTTCTTGTCTCA
ATAGCGTACATCATGCGATCAAAACAGCCAAATTCTGTACCCCACAAAGC
TTTGACATCCAACATTCCGTCTGATGATGAGGACATTCTGCGTGCCTCTA
GAATCGAGGCAGAAGATTATGTTCATCCAGAATATCGCGCTCGCGGAGTG
GCATGCATGCCTAGTGTGACACGACTTCAGGATGGGACGCAAGTCGAATA
TGTTAGTAATGCTGTCAAGTCTTGGCGATTGGCAACAAATCAAAGCGTCA
ATTTGCGACAGCTCACAGTTTTTGACATGGATCTAGAACCGGCCGCGAAT
CCCTTCTGGTTGAAAACTGTTTTCCAAACAAGTAATGCAAAGCTCCCCAG
CTGGCTCAAGCTTGCTCAACGAGAACGTCCTCCGATTGCTCATCGAAAGC
TTACCCTGGGCGATGATGAGAAGCGTGTCAAGTGGAGAAGTAAGGAAGCT
CAGGATTACGCAGAAGTACTTCGCCGTTGCACAGAAGAAAACGATGCTGA
ATACATCGTTATTGTTCAGGACGATGTTCTATTTCGCGAGCAGATGAAAA
ACGTCATCGAGTGGTGTGATCGACATTTGCAAGACTCGTTTACAACAAAT
AAACATGGTAGACCAAAGCATATCCGAATGTGCAGTGCATCCTTGTTTGA
CCTTTCTAATGGTGAAGAGGATGCTCATGAGCTTCGTTCCTCTAACATGG
TTGCACGGATATGGAAAAGAGAGTTTGTTGATAGTATGATGCAGAAGTCA
GAGGAGAAAAACAGTTGTGATGGAGCCAAACCCTGTCAGACATCGTGGTC
GTATCTCATCCCACCCTGCCAATCAAAGAGAGAATACTATTACTTGACTG
TTCAAGTTTATGTTGATAGTCGTTTCTACACGATCAAAACGGAAAGCTCG
CCAACAAACATGGACTGGAGTGAGGAAGAAACTAAGCAAATTGCCGGGAA
TTTGCGACGTATCGTGCATATGTTCTGTGAACACCCTCACGTTCAGAATG
AACAAATCAGTGGTGCTTTCAACCTCATGCATGGAGATTTAAAGCATCAA
CTCACCATAGCACGACTCCAGCTCATCAGTCGTGAAGCCAGACGTAAAGC
GGCCACGCTTCACAAAGGGCTTTACGTGACGAAGGAGGAGGCGCAAGCGA
CGATCGAGGAAATTTTAAGCAATGGATTTCAAACTCCGATGCATGTGGCC
ATAGAACTGAGAAAGAGAGGATATGAAGGGAAGTGGATACGACCAAGATA
CGTTAGACATCTCGTGAGGCACATCCTACGAAAAAAGAAAGAGAAAGAGC
AGTTGCACGCGAAGCTGCGGGGCGCAGGAAAGGGTGTGCCAGACCGCCTT
GGGAGGCCTGTGAAGAGTAGGGCTGAAATCATGTGTGAAATGCTCCCAGA
CCTTTGCAATCAGAAACCCACAGATGGTATTGATGATTGTGATGATGTCT
TTGGAGCCGAATTGAAATCTCTAGAAGACGCTTGGTACTAA
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protein sequence of Gvermi11605.t1

>Gvermi11605.t1 ID=Gvermi11605.t1|Name=Gvermi11605.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=547bp
MVTAVRRRPLATSSNTIFRAPGNPPSPEPSIVASKAKYVFFIVLISFLVS
IAYIMRSKQPNSVPHKALTSNIPSDDEDILRASRIEAEDYVHPEYRARGV
ACMPSVTRLQDGTQVEYVSNAVKSWRLATNQSVNLRQLTVFDMDLEPAAN
PFWLKTVFQTSNAKLPSWLKLAQRERPPIAHRKLTLGDDEKRVKWRSKEA
QDYAEVLRRCTEENDAEYIVIVQDDVLFREQMKNVIEWCDRHLQDSFTTN
KHGRPKHIRMCSASLFDLSNGEEDAHELRSSNMVARIWKREFVDSMMQKS
EEKNSCDGAKPCQTSWSYLIPPCQSKREYYYLTVQVYVDSRFYTIKTESS
PTNMDWSEEETKQIAGNLRRIVHMFCEHPHVQNEQISGAFNLMHGDLKHQ
LTIARLQLISREARRKAATLHKGLYVTKEEAQATIEEILSNGFQTPMHVA
IELRKRGYEGKWIRPRYVRHLVRHILRKKKEKEQLHAKLRGAGKGVPDRL
GRPVKSRAEIMCEMLPDLCNQKPTDGIDDCDDVFGAELKSLEDAWY*
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mRNA from alignment at ScGOVlb_3404:1119814..1121591-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11605.t1 ID=Gvermi11605.t1|Name=Gvermi11605.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1778bp|location=Sequence derived from alignment at ScGOVlb_3404:1119814..1121591- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTACGGCTGTTCGTCGCCGACCCTTGGCAACTTCGTCAAACACGAT
CTTTCGCGCACCCGGTAACCCACCTTCTCCTGAGCCGTCTATAGTCGCAT
CTAAAGCTAAATATGTGTTTTTCATTGTTTTAATTTCGTTTCTTGTCTCA
ATAGCGTACATCATGCGATCAAAACAGCCAAATTCTGTACCCCACAAAGC
TTTGACATCCAACATTCCGTCTGATGATGAGGACATTCTGCGTGCCTCTA
GAATCGAGGCAGAAGATTATGTTCATCCAGAATATCGCGCTCGCGGAGTG
GCATGCATGCCTAGTGTGACACGACTTCAGGATGGGACGCAAGTCGAATA
TGTTAGTAATGCTGTCAAGTCTTGGCGATTGGCAACAAATCAAAGCGTCA
ATTTGCGACAGCTCACAGTTTTTGACATGGATCTAGAACCGGCCGCGAAT
CCCTTCTGGTTGAAAACTGTTTTCCAAACAAGTAATGCAAAGCTCCCCAG
CTGGCTCAAGCTTGCTCAACGAGAACGTCCTCCGATTGCTCATCGAAAGC
TTACCCTGGGCGATGATGAGAAGCGTGTCAAGTGGAGAAGTAAGGAAGCT
CAGGATTACGCAGAAGTACTTCGCCGTTGCACAGAAGAAAACGATGCTGA
ATACATCGTTATTGTTCAGGACGATGTTCTATTTCGCGAGCAGATGAAAA
ACGTCATCGAGTGGTGTGATCGACATTTGCAAGACTCGTTTACAACAAAT
AAACATGGTAGACCAAAGCATATCCGAATGTGCAGTGCATCCTTGTTTGA
CCTTTCTAATGGTGAAGAGGATGCTCATGAGCTTCGTTCCTCTAACATGG
TTGCACGGATATGGAAAAGAGAGTTTGTTGATAGTATGGTACGTTATGTG
ACTACCAACTTTGATGAAGCTCCGGTTGACTGGCTTGCAGATCGCAGATG
CAGAAGTCAGAGGAGAAAAACAGTTGTGATGGAGCCAAACCCTGTCAGAC
ATCGTGGTCGTATCTCATCCCACCCTGCCAATCAAAGAGAGAATACTATT
ACTTGACTGTTCAAGTTTATGTTGATAGTCGTTTCTACACGATCAAAACG
GTATGTTGCCCGGTATTCTGAACTGGTACTTAAAGGCTTTAATGGCGCGC
CAAAGTGCGACTGAATCCTGTCGTTTAGGAAAGCTCGCCAACAAACATGG
ACTGGAGTGAGGAAGAAACTAAGCAAATTGCCGGGAATTTGCGACGTATC
GTGCATATGTTCTGTGAACACCCTCACGTTCAGAATGAACAAATCAGTGG
TGCTTTCAACCTCATGCATGGAGATTTAAAGCATCAACTCACCATAGCAC
GACTCCAGCTCATCAGTCGTGAAGCCAGACGTAAAGCGGCCACGCTTCAC
AAAGGGCTTTACGTGACGAAGGAGGAGGCGCAAGCGACGATCGAGGAAAT
TTTAAGCAATGGATTTCAAACTCCGATGCATGTGGCCATAGAACTGAGAA
AGAGAGGATATGAAGGGAAGTGGATACGACCAAGATACGTTAGACATCTC
GTGAGGCACATCCTACGAAAAAAGAAAGAGAAAGAGCAGTTGCACGCGAA
GCTGCGGGGCGCAGGAAAGGGTGTGCCAGACCGCCTTGGGAGGCCTGTGA
AGAGTAGGGCTGAAATCATGTGTGAAATGCTCCCAGACCTTTGCAATCAG
AAACCCACAGATGGTATTGATGATTGTGATGATGTCTTTGGAGCCGAATT
GAAATCTCTAGAAGACGCTTGGTACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1119814..1121591-

>Gvermi11605.t1 ID=Gvermi11605.t1|Name=Gvermi11605.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1641bp|location=Sequence derived from alignment at ScGOVlb_3404:1119814..1121591- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTACGGCTGTTCGTCGCCGACCCTTGGCAACTTCGTCAAACACGAT
CTTTCGCGCACCCGGTAACCCACCTTCTCCTGAGCCGTCTATAGTCGCAT
CTAAAGCTAAATATGTGTTTTTCATTGTTTTAATTTCGTTTCTTGTCTCA
ATAGCGTACATCATGCGATCAAAACAGCCAAATTCTGTACCCCACAAAGC
TTTGACATCCAACATTCCGTCTGATGATGAGGACATTCTGCGTGCCTCTA
GAATCGAGGCAGAAGATTATGTTCATCCAGAATATCGCGCTCGCGGAGTG
GCATGCATGCCTAGTGTGACACGACTTCAGGATGGGACGCAAGTCGAATA
TGTTAGTAATGCTGTCAAGTCTTGGCGATTGGCAACAAATCAAAGCGTCA
ATTTGCGACAGCTCACAGTTTTTGACATGGATCTAGAACCGGCCGCGAAT
CCCTTCTGGTTGAAAACTGTTTTCCAAACAAGTAATGCAAAGCTCCCCAG
CTGGCTCAAGCTTGCTCAACGAGAACGTCCTCCGATTGCTCATCGAAAGC
TTACCCTGGGCGATGATGAGAAGCGTGTCAAGTGGAGAAGTAAGGAAGCT
CAGGATTACGCAGAAGTACTTCGCCGTTGCACAGAAGAAAACGATGCTGA
ATACATCGTTATTGTTCAGGACGATGTTCTATTTCGCGAGCAGATGAAAA
ACGTCATCGAGTGGTGTGATCGACATTTGCAAGACTCGTTTACAACAAAT
AAACATGGTAGACCAAAGCATATCCGAATGTGCAGTGCATCCTTGTTTGA
CCTTTCTAATGGTGAAGAGGATGCTCATGAGCTTCGTTCCTCTAACATGG
TTGCACGGATATGGAAAAGAGAGTTTGTTGATAGTATGATGCAGAAGTCA
GAGGAGAAAAACAGTTGTGATGGAGCCAAACCCTGTCAGACATCGTGGTC
GTATCTCATCCCACCCTGCCAATCAAAGAGAGAATACTATTACTTGACTG
TTCAAGTTTATGTTGATAGTCGTTTCTACACGATCAAAACGGAAAGCTCG
CCAACAAACATGGACTGGAGTGAGGAAGAAACTAAGCAAATTGCCGGGAA
TTTGCGACGTATCGTGCATATGTTCTGTGAACACCCTCACGTTCAGAATG
AACAAATCAGTGGTGCTTTCAACCTCATGCATGGAGATTTAAAGCATCAA
CTCACCATAGCACGACTCCAGCTCATCAGTCGTGAAGCCAGACGTAAAGC
GGCCACGCTTCACAAAGGGCTTTACGTGACGAAGGAGGAGGCGCAAGCGA
CGATCGAGGAAATTTTAAGCAATGGATTTCAAACTCCGATGCATGTGGCC
ATAGAACTGAGAAAGAGAGGATATGAAGGGAAGTGGATACGACCAAGATA
CGTTAGACATCTCGTGAGGCACATCCTACGAAAAAAGAAAGAGAAAGAGC
AGTTGCACGCGAAGCTGCGGGGCGCAGGAAAGGGTGTGCCAGACCGCCTT
GGGAGGCCTGTGAAGAGTAGGGCTGAAATCATGTGTGAAATGCTCCCAGA
CCTTTGCAATCAGAAACCCACAGATGGTATTGATGATTGTGATGATGTCT
TTGGAGCCGAATTGAAATCTCTAGAAGACGCTTGGTACTAA
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