Gvermi11602.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11602.t1
Unique NameGvermi11602.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length313
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1114997..1116033 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709120.1
Preferred nameSTRAP
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG koko:K13137
KEGG Pathwayko03013,map03013
KEGG ModuleM00426
GOsGO:0000122,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0001894,GO:0001932,GO:0001933,GO:0002009,GO:0002165,GO:0003008,GO:0003674,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007586,GO:0008150,GO:0008152,GO:0008285,GO:0008380,GO:0009653,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010605,GO:0010629,GO:0010632,GO:0010633,GO:0010646,GO:0010648,GO:0010669,GO:0010717,GO:0010719,GO:0016043,GO:0016070,GO:0016071,GO:0017015,GO:0019219,GO:0019220,GO:0019222,GO:0022600,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023057,GO:0030277,GO:0030334,GO:0030336,GO:0030512,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032797,GO:0032879,GO:0032991,GO:0034622,GO:0034641,GO:0034719,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035295,GO:0040012,GO:0040013,GO:0042127,GO:0042325,GO:0042326,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045595,GO:0045596,GO:0045892,GO:0045934,GO:0045936,GO:0046483,GO:0048513,GO:0048519,GO:0048523,GO:0048563,GO:0048569,GO:0048583,GO:0048585,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048856,GO:0048871,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051270,GO:0051271,GO:0060249,GO:0060255,GO:0060393,GO:0060394,GO:0060429,GO:0060562,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090304,GO:0120114,GO:1901360,GO:1902679,GO:1903506,GO:1903507,GO:1903844,GO:1903845,GO:2000026,GO:2000112,GO:2000113,GO:2000145,GO:2000146,GO:2001141
Evalue4.45e-78
EggNOG OGsKOG0278@1|root,KOG0278@2759|Eukaryota
Descriptionnegative regulation of transforming growth factor beta receptor signaling pathway
COG categoryE
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11602Gvermi11602Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1114997..1116033 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11602.t1Gvermi11602.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1114997..1116033 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11602.t1.start1Gvermi11602.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1114997..1114999 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11602.t1.CDS1Gvermi11602.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1114997..1115901 +
Gvermi11602.t1.CDS2Gvermi11602.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1116000..1116033 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11602.t1.exon1Gvermi11602.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1114997..1115901 +
Gvermi11602.t1.exon2Gvermi11602.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1116000..1116033 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11602.t1.intron1Gvermi11602.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 1115902..1115999 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11602.t1.stop1Gvermi11602.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1116031..1116033 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11602.t1 ID=Gvermi11602.t1|Name=Gvermi11602.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=313bp
MVCPGHNRGIVELQYSPPGSEGVFLVSACLDGTPMLRDGISGDWIGSFVG
HKGAVWGACISSDASLVATAGADFTARLWNAITGECKTVLTQKHICKSVA
FSADNSRLLTAGNTSSINIYDVAACEDTPVALLTPKDSPGTKHSVKLARY
VKSDTNTVVSAVSSANEEKVLSIWDVRSGSVERKLPLGSICKSGELTSDG
KILTVTGGDSTLSVYDLDKMERIMQIDLPEQTESASLRYPQMDMMVAGGQ
DLTVRRFEVTSDSAAVEKEANRGHHGPVWVLRFAPDGESYASGSDDGTIR
LWKTTVDPSLVA*
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spliced messenger RNA

>Gvermi11602.t1 ID=Gvermi11602.t1|Name=Gvermi11602.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=939bp|location=Sequence derived from alignment at ScGOVlb_3404:1114997..1116033+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTATGCCCCGGCCATAATCGAGGCATTGTCGAGCTTCAGTATTCGCC
ACCGGGATCGGAGGGCGTTTTCCTTGTATCTGCCTGTTTGGATGGTACGC
CTATGTTACGAGACGGAATTTCAGGCGACTGGATTGGCTCATTTGTCGGT
CACAAGGGGGCAGTTTGGGGTGCTTGCATTTCATCTGACGCCTCCTTGGT
CGCCACAGCTGGCGCCGATTTCACAGCACGTCTCTGGAATGCTATCACAG
GCGAATGTAAGACTGTTCTTACTCAGAAGCATATTTGCAAATCCGTCGCT
TTCTCGGCGGATAACTCCCGGCTGCTCACCGCGGGGAACACGAGTTCCAT
CAACATATACGATGTTGCTGCGTGCGAGGATACCCCGGTTGCGCTGCTCA
CCCCGAAAGACTCTCCCGGCACCAAGCACAGTGTTAAATTAGCGAGGTAT
GTAAAATCAGACACGAACACCGTTGTTTCTGCAGTGAGCAGTGCGAACGA
AGAGAAAGTCTTGTCGATATGGGATGTTAGATCCGGAAGTGTTGAACGGA
AGCTGCCTCTAGGCTCTATATGCAAATCTGGCGAGTTGACTTCCGACGGT
AAGATTCTCACTGTAACTGGAGGTGATTCAACGTTGTCAGTTTATGACTT
GGACAAAATGGAGCGCATAATGCAGATAGATCTTCCGGAACAAACTGAAA
GCGCAAGTCTTCGGTATCCTCAAATGGACATGATGGTCGCTGGAGGTCAA
GATTTAACGGTCAGAAGGTTCGAGGTGACGAGCGACAGCGCAGCGGTTGA
GAAAGAGGCGAACAGGGGTCATCACGGGCCAGTTTGGGTTTTGCGATTTG
CTCCAGACGGCGAAAGCTATGCGAGTGGTTCTGATGACGGTACAATTCGT
TTATGGAAAACCACGGTCGATCCGTCCCTAGTCGCGTGA
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protein sequence of Gvermi11602.t1

>Gvermi11602.t1 ID=Gvermi11602.t1|Name=Gvermi11602.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=313bp
MVCPGHNRGIVELQYSPPGSEGVFLVSACLDGTPMLRDGISGDWIGSFVG
HKGAVWGACISSDASLVATAGADFTARLWNAITGECKTVLTQKHICKSVA
FSADNSRLLTAGNTSSINIYDVAACEDTPVALLTPKDSPGTKHSVKLARY
VKSDTNTVVSAVSSANEEKVLSIWDVRSGSVERKLPLGSICKSGELTSDG
KILTVTGGDSTLSVYDLDKMERIMQIDLPEQTESASLRYPQMDMMVAGGQ
DLTVRRFEVTSDSAAVEKEANRGHHGPVWVLRFAPDGESYASGSDDGTIR
LWKTTVDPSLVA*
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mRNA from alignment at ScGOVlb_3404:1114997..1116033+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11602.t1 ID=Gvermi11602.t1|Name=Gvermi11602.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1037bp|location=Sequence derived from alignment at ScGOVlb_3404:1114997..1116033+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTATGCCCCGGCCATAATCGAGGCATTGTCGAGCTTCAGTATTCGCC
ACCGGGATCGGAGGGCGTTTTCCTTGTATCTGCCTGTTTGGATGGTACGC
CTATGTTACGAGACGGAATTTCAGGCGACTGGATTGGCTCATTTGTCGGT
CACAAGGGGGCAGTTTGGGGTGCTTGCATTTCATCTGACGCCTCCTTGGT
CGCCACAGCTGGCGCCGATTTCACAGCACGTCTCTGGAATGCTATCACAG
GCGAATGTAAGACTGTTCTTACTCAGAAGCATATTTGCAAATCCGTCGCT
TTCTCGGCGGATAACTCCCGGCTGCTCACCGCGGGGAACACGAGTTCCAT
CAACATATACGATGTTGCTGCGTGCGAGGATACCCCGGTTGCGCTGCTCA
CCCCGAAAGACTCTCCCGGCACCAAGCACAGTGTTAAATTAGCGAGGTAT
GTAAAATCAGACACGAACACCGTTGTTTCTGCAGTGAGCAGTGCGAACGA
AGAGAAAGTCTTGTCGATATGGGATGTTAGATCCGGAAGTGTTGAACGGA
AGCTGCCTCTAGGCTCTATATGCAAATCTGGCGAGTTGACTTCCGACGGT
AAGATTCTCACTGTAACTGGAGGTGATTCAACGTTGTCAGTTTATGACTT
GGACAAAATGGAGCGCATAATGCAGATAGATCTTCCGGAACAAACTGAAA
GCGCAAGTCTTCGGTATCCTCAAATGGACATGATGGTCGCTGGAGGTCAA
GATTTAACGGTCAGAAGGTTCGAGGTGACGAGCGACAGCGCAGCGGTTGA
GAAAGAGGCGAACAGGGGTCATCACGGGCCAGTTTGGGTTTTGCGATTTG
CTCCAGACGGCGAAAGCTATGCGAGTGGTTCTGATGACGGTACAATTCGT
TTATGGTACGTTAACTTGGCAGTTGCTCTCGAGGTGTAAGATGGAAGAAA
TTATCATTAATAACTAACATGTGTTGTTCACTGCGTTTGCTATCCTTTTC
CAGGAAAACCACGGTCGATCCGTCCCTAGTCGCGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1114997..1116033+

>Gvermi11602.t1 ID=Gvermi11602.t1|Name=Gvermi11602.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=939bp|location=Sequence derived from alignment at ScGOVlb_3404:1114997..1116033+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTATGCCCCGGCCATAATCGAGGCATTGTCGAGCTTCAGTATTCGCC
ACCGGGATCGGAGGGCGTTTTCCTTGTATCTGCCTGTTTGGATGGTACGC
CTATGTTACGAGACGGAATTTCAGGCGACTGGATTGGCTCATTTGTCGGT
CACAAGGGGGCAGTTTGGGGTGCTTGCATTTCATCTGACGCCTCCTTGGT
CGCCACAGCTGGCGCCGATTTCACAGCACGTCTCTGGAATGCTATCACAG
GCGAATGTAAGACTGTTCTTACTCAGAAGCATATTTGCAAATCCGTCGCT
TTCTCGGCGGATAACTCCCGGCTGCTCACCGCGGGGAACACGAGTTCCAT
CAACATATACGATGTTGCTGCGTGCGAGGATACCCCGGTTGCGCTGCTCA
CCCCGAAAGACTCTCCCGGCACCAAGCACAGTGTTAAATTAGCGAGGTAT
GTAAAATCAGACACGAACACCGTTGTTTCTGCAGTGAGCAGTGCGAACGA
AGAGAAAGTCTTGTCGATATGGGATGTTAGATCCGGAAGTGTTGAACGGA
AGCTGCCTCTAGGCTCTATATGCAAATCTGGCGAGTTGACTTCCGACGGT
AAGATTCTCACTGTAACTGGAGGTGATTCAACGTTGTCAGTTTATGACTT
GGACAAAATGGAGCGCATAATGCAGATAGATCTTCCGGAACAAACTGAAA
GCGCAAGTCTTCGGTATCCTCAAATGGACATGATGGTCGCTGGAGGTCAA
GATTTAACGGTCAGAAGGTTCGAGGTGACGAGCGACAGCGCAGCGGTTGA
GAAAGAGGCGAACAGGGGTCATCACGGGCCAGTTTGGGTTTTGCGATTTG
CTCCAGACGGCGAAAGCTATGCGAGTGGTTCTGATGACGGTACAATTCGT
TTATGGAAAACCACGGTCGATCCGTCCCTAGTCGCGTGA
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