Gvermi11592.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11592.t1
Unique NameGvermi11592.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length500
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1085751..1087250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3847.GLYMA18G17190.1
PFAMsGlyco_transf_92
Max annot lvl35493|Streptophyta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0012505,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue4.34e-11
EggNOG OGs28NUN@1|root,2QVEP@2759|Eukaryota,37JGF@33090|Viridiplantae,3GXC6@35493|Streptophyta,4JEAY@91835|fabids
DescriptionUPF0392 protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11592Gvermi11592Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1085751..1087250 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11592.t1.start1Gvermi11592.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1085751..1085753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11592.t1.CDS1Gvermi11592.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1085751..1087250 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11592.t1.exon1Gvermi11592.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1085751..1087250 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11592.t1.stop1Gvermi11592.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1087248..1087250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11592.t1Gvermi11592.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1085751..1087250 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11592.t1 ID=Gvermi11592.t1|Name=Gvermi11592.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=500bp
MYMKRPKHFVALKFILPVFLLPSLLLVVLNRPDPVLPPPLAPLTSDFAKA
YPPHPNDWKRPLTIAAYARRLNSMYELSLFTTGTHAVSFNRTFNVFGCLI
GNMPVNATQIFPELTVCEVDPDLLTDDIPISVLLYHDQSLRQAMNSSFIS
KRENFTIFPGDVVSFHPNDSYTIQDGLASIRTSVRWNEKLLDDENGLRYE
LCLMTAMRQEPYLLPEWIEYYRRMGVDYFYIYENNAERPIRLKKYADFVE
VVPWPWSRSQLQSNNHFLKASRARCKYVAFFDADEYAMVGDLRAGALKYY
VFQKTFIDGFQQVFFPFLNMINSGYVRRPRGYLPELYTIREKNQTSKLGK
VLIDTDNEWVWHRVHKIDASANYPHRMYWNSTQEYEPTSIMHNSMLVHFT
HRSWEDYCAKNLAGGASTLTAMPERQINVRSPDPKYMGRVGEDFEFFRNL
WREVMRHPNQHGLTLMWKNTKGEQCSQLYCPSCIFIRLGIAQCLDDYLH*
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spliced messenger RNA

>Gvermi11592.t1 ID=Gvermi11592.t1|Name=Gvermi11592.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at ScGOVlb_3404:1085751..1087250+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACATGAAAAGGCCAAAACACTTTGTGGCTCTCAAATTCATCTTACC
CGTATTTCTACTTCCATCTCTGCTTTTAGTTGTTTTGAACCGCCCAGATC
CAGTCTTACCTCCTCCCCTGGCGCCACTGACATCAGATTTTGCGAAAGCG
TACCCGCCACACCCCAATGATTGGAAGCGACCGCTCACAATTGCAGCATA
CGCCAGAAGACTCAATTCCATGTATGAACTTTCGTTGTTCACGACTGGCA
CGCATGCTGTTTCCTTCAATCGAACTTTCAACGTTTTTGGCTGTTTGATC
GGAAACATGCCCGTGAATGCGACTCAGATATTTCCGGAACTCACTGTTTG
CGAAGTGGACCCAGATCTTCTTACGGATGACATTCCGATATCCGTTTTAC
TTTACCATGACCAGAGTCTTCGACAAGCAATGAATTCAAGCTTCATTAGT
AAGCGTGAAAATTTTACCATCTTTCCTGGGGACGTAGTCTCATTTCACCC
CAACGATTCTTACACAATTCAAGACGGACTGGCTTCTATTCGTACCTCGG
TACGATGGAATGAAAAGCTCCTGGACGACGAAAATGGTTTAAGGTATGAG
CTATGTCTCATGACTGCCATGCGTCAGGAGCCTTATTTGCTTCCAGAATG
GATAGAATACTACAGAAGAATGGGTGTCGACTACTTCTACATATATGAGA
ACAACGCAGAGAGACCTATTCGCCTCAAGAAATATGCTGATTTTGTCGAA
GTAGTGCCGTGGCCGTGGTCTCGTTCACAACTTCAAAGCAACAATCATTT
CTTGAAAGCTTCTCGTGCTCGGTGCAAGTATGTTGCGTTTTTCGATGCCG
ATGAGTACGCCATGGTCGGCGATCTTCGGGCAGGTGCTCTAAAATATTAC
GTTTTTCAGAAGACGTTCATCGACGGATTTCAGCAAGTTTTTTTCCCATT
CTTGAATATGATCAACAGCGGATACGTGCGTCGACCGCGAGGATACTTGC
CAGAGCTTTACACCATTAGAGAAAAGAATCAGACTTCGAAGTTGGGAAAG
GTGCTCATTGACACCGACAATGAGTGGGTCTGGCACCGAGTGCACAAAAT
AGACGCTTCAGCAAATTACCCGCATCGCATGTATTGGAATAGCACTCAAG
AATATGAACCTACCTCAATCATGCATAACTCTATGCTCGTGCACTTCACC
CATAGAAGCTGGGAAGACTATTGTGCGAAGAATTTAGCTGGTGGTGCGAG
CACTCTGACTGCCATGCCCGAACGTCAAATAAATGTAAGAAGTCCTGATC
CGAAGTATATGGGCAGGGTTGGAGAAGATTTCGAGTTCTTTCGAAACTTA
TGGCGTGAAGTAATGAGACATCCAAATCAGCACGGGTTAACTCTCATGTG
GAAGAACACAAAGGGCGAGCAGTGCAGTCAGCTTTACTGCCCCAGTTGTA
TATTCATTCGATTAGGCATCGCCCAGTGTCTGGATGACTACTTACATTGA
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protein sequence of Gvermi11592.t1

>Gvermi11592.t1 ID=Gvermi11592.t1|Name=Gvermi11592.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=500bp
MYMKRPKHFVALKFILPVFLLPSLLLVVLNRPDPVLPPPLAPLTSDFAKA
YPPHPNDWKRPLTIAAYARRLNSMYELSLFTTGTHAVSFNRTFNVFGCLI
GNMPVNATQIFPELTVCEVDPDLLTDDIPISVLLYHDQSLRQAMNSSFIS
KRENFTIFPGDVVSFHPNDSYTIQDGLASIRTSVRWNEKLLDDENGLRYE
LCLMTAMRQEPYLLPEWIEYYRRMGVDYFYIYENNAERPIRLKKYADFVE
VVPWPWSRSQLQSNNHFLKASRARCKYVAFFDADEYAMVGDLRAGALKYY
VFQKTFIDGFQQVFFPFLNMINSGYVRRPRGYLPELYTIREKNQTSKLGK
VLIDTDNEWVWHRVHKIDASANYPHRMYWNSTQEYEPTSIMHNSMLVHFT
HRSWEDYCAKNLAGGASTLTAMPERQINVRSPDPKYMGRVGEDFEFFRNL
WREVMRHPNQHGLTLMWKNTKGEQCSQLYCPSCIFIRLGIAQCLDDYLH*
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mRNA from alignment at ScGOVlb_3404:1085751..1087250+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11592.t1 ID=Gvermi11592.t1|Name=Gvermi11592.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at ScGOVlb_3404:1085751..1087250+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACATGAAAAGGCCAAAACACTTTGTGGCTCTCAAATTCATCTTACC
CGTATTTCTACTTCCATCTCTGCTTTTAGTTGTTTTGAACCGCCCAGATC
CAGTCTTACCTCCTCCCCTGGCGCCACTGACATCAGATTTTGCGAAAGCG
TACCCGCCACACCCCAATGATTGGAAGCGACCGCTCACAATTGCAGCATA
CGCCAGAAGACTCAATTCCATGTATGAACTTTCGTTGTTCACGACTGGCA
CGCATGCTGTTTCCTTCAATCGAACTTTCAACGTTTTTGGCTGTTTGATC
GGAAACATGCCCGTGAATGCGACTCAGATATTTCCGGAACTCACTGTTTG
CGAAGTGGACCCAGATCTTCTTACGGATGACATTCCGATATCCGTTTTAC
TTTACCATGACCAGAGTCTTCGACAAGCAATGAATTCAAGCTTCATTAGT
AAGCGTGAAAATTTTACCATCTTTCCTGGGGACGTAGTCTCATTTCACCC
CAACGATTCTTACACAATTCAAGACGGACTGGCTTCTATTCGTACCTCGG
TACGATGGAATGAAAAGCTCCTGGACGACGAAAATGGTTTAAGGTATGAG
CTATGTCTCATGACTGCCATGCGTCAGGAGCCTTATTTGCTTCCAGAATG
GATAGAATACTACAGAAGAATGGGTGTCGACTACTTCTACATATATGAGA
ACAACGCAGAGAGACCTATTCGCCTCAAGAAATATGCTGATTTTGTCGAA
GTAGTGCCGTGGCCGTGGTCTCGTTCACAACTTCAAAGCAACAATCATTT
CTTGAAAGCTTCTCGTGCTCGGTGCAAGTATGTTGCGTTTTTCGATGCCG
ATGAGTACGCCATGGTCGGCGATCTTCGGGCAGGTGCTCTAAAATATTAC
GTTTTTCAGAAGACGTTCATCGACGGATTTCAGCAAGTTTTTTTCCCATT
CTTGAATATGATCAACAGCGGATACGTGCGTCGACCGCGAGGATACTTGC
CAGAGCTTTACACCATTAGAGAAAAGAATCAGACTTCGAAGTTGGGAAAG
GTGCTCATTGACACCGACAATGAGTGGGTCTGGCACCGAGTGCACAAAAT
AGACGCTTCAGCAAATTACCCGCATCGCATGTATTGGAATAGCACTCAAG
AATATGAACCTACCTCAATCATGCATAACTCTATGCTCGTGCACTTCACC
CATAGAAGCTGGGAAGACTATTGTGCGAAGAATTTAGCTGGTGGTGCGAG
CACTCTGACTGCCATGCCCGAACGTCAAATAAATGTAAGAAGTCCTGATC
CGAAGTATATGGGCAGGGTTGGAGAAGATTTCGAGTTCTTTCGAAACTTA
TGGCGTGAAGTAATGAGACATCCAAATCAGCACGGGTTAACTCTCATGTG
GAAGAACACAAAGGGCGAGCAGTGCAGTCAGCTTTACTGCCCCAGTTGTA
TATTCATTCGATTAGGCATCGCCCAGTGTCTGGATGACTACTTACATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1085751..1087250+

>Gvermi11592.t1 ID=Gvermi11592.t1|Name=Gvermi11592.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1500bp|location=Sequence derived from alignment at ScGOVlb_3404:1085751..1087250+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACATGAAAAGGCCAAAACACTTTGTGGCTCTCAAATTCATCTTACC
CGTATTTCTACTTCCATCTCTGCTTTTAGTTGTTTTGAACCGCCCAGATC
CAGTCTTACCTCCTCCCCTGGCGCCACTGACATCAGATTTTGCGAAAGCG
TACCCGCCACACCCCAATGATTGGAAGCGACCGCTCACAATTGCAGCATA
CGCCAGAAGACTCAATTCCATGTATGAACTTTCGTTGTTCACGACTGGCA
CGCATGCTGTTTCCTTCAATCGAACTTTCAACGTTTTTGGCTGTTTGATC
GGAAACATGCCCGTGAATGCGACTCAGATATTTCCGGAACTCACTGTTTG
CGAAGTGGACCCAGATCTTCTTACGGATGACATTCCGATATCCGTTTTAC
TTTACCATGACCAGAGTCTTCGACAAGCAATGAATTCAAGCTTCATTAGT
AAGCGTGAAAATTTTACCATCTTTCCTGGGGACGTAGTCTCATTTCACCC
CAACGATTCTTACACAATTCAAGACGGACTGGCTTCTATTCGTACCTCGG
TACGATGGAATGAAAAGCTCCTGGACGACGAAAATGGTTTAAGGTATGAG
CTATGTCTCATGACTGCCATGCGTCAGGAGCCTTATTTGCTTCCAGAATG
GATAGAATACTACAGAAGAATGGGTGTCGACTACTTCTACATATATGAGA
ACAACGCAGAGAGACCTATTCGCCTCAAGAAATATGCTGATTTTGTCGAA
GTAGTGCCGTGGCCGTGGTCTCGTTCACAACTTCAAAGCAACAATCATTT
CTTGAAAGCTTCTCGTGCTCGGTGCAAGTATGTTGCGTTTTTCGATGCCG
ATGAGTACGCCATGGTCGGCGATCTTCGGGCAGGTGCTCTAAAATATTAC
GTTTTTCAGAAGACGTTCATCGACGGATTTCAGCAAGTTTTTTTCCCATT
CTTGAATATGATCAACAGCGGATACGTGCGTCGACCGCGAGGATACTTGC
CAGAGCTTTACACCATTAGAGAAAAGAATCAGACTTCGAAGTTGGGAAAG
GTGCTCATTGACACCGACAATGAGTGGGTCTGGCACCGAGTGCACAAAAT
AGACGCTTCAGCAAATTACCCGCATCGCATGTATTGGAATAGCACTCAAG
AATATGAACCTACCTCAATCATGCATAACTCTATGCTCGTGCACTTCACC
CATAGAAGCTGGGAAGACTATTGTGCGAAGAATTTAGCTGGTGGTGCGAG
CACTCTGACTGCCATGCCCGAACGTCAAATAAATGTAAGAAGTCCTGATC
CGAAGTATATGGGCAGGGTTGGAGAAGATTTCGAGTTCTTTCGAAACTTA
TGGCGTGAAGTAATGAGACATCCAAATCAGCACGGGTTAACTCTCATGTG
GAAGAACACAAAGGGCGAGCAGTGCAGTCAGCTTTACTGCCCCAGTTGTA
TATTCATTCGATTAGGCATCGCCCAGTGTCTGGATGACTACTTACATTGA
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