Gvermi11590.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11590.t1
Unique NameGvermi11590.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length183
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1081149..1081697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog70448.A0A096PB56
PFAMsSpoU_methylase,SpoU_sub_bind
Max annot lvl3041|Chlorophyta
KEGG koko:K15507
Evalue8.33e-39
EggNOG OGsCOG0566@1|root,KOG0838@2759|Eukaryota,37PZ8@33090|Viridiplantae,34KQ6@3041|Chlorophyta
DescriptionRNA 2'-O ribose methyltransferase substrate binding
COG categoryA
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11590Gvermi11590Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1081149..1081697 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11590.t1.start1Gvermi11590.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1081149..1081151 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11590.t1.CDS1Gvermi11590.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1081149..1081697 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11590.t1.exon1Gvermi11590.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1081149..1081697 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11590.t1.stop1Gvermi11590.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1081695..1081697 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11590.t1Gvermi11590.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1081149..1081697 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11590.t1 ID=Gvermi11590.t1|Name=Gvermi11590.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=183bp
MLNVLVGHRKHQGVAAQASALEYLPEHELSARDGVLVALDSVSDPHNVGA
VLRSAHFLGADGVVVSARNCAPLGAATSKASAGAAEAVTAFATPSLPRLL
RRLRGEGWRVVGLAADGAQRLQDVAQAPRTVLVVGGEGDGLRVLVRRECD
VLAAIDGGGDGVVDSLNLSVAAAIALHHLLPR*
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spliced messenger RNA

>Gvermi11590.t1 ID=Gvermi11590.t1|Name=Gvermi11590.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=549bp|location=Sequence derived from alignment at ScGOVlb_3404:1081149..1081697+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAACGTGCTCGTGGGGCATCGCAAGCACCAGGGCGTGGCGGCACA
GGCCAGCGCGCTGGAGTACTTACCCGAGCACGAGTTGAGCGCGCGCGACG
GCGTGCTGGTGGCATTGGACAGCGTGTCAGACCCGCACAACGTAGGCGCC
GTGCTGCGGTCGGCGCACTTTCTGGGGGCGGATGGGGTGGTGGTGTCGGC
GCGCAACTGCGCGCCGCTGGGCGCAGCCACCAGCAAGGCGTCGGCGGGCG
CAGCTGAGGCGGTGACGGCATTCGCCACGCCGTCGCTGCCGCGGCTGCTG
CGACGACTGCGCGGCGAGGGTTGGCGCGTGGTGGGGCTGGCGGCCGACGG
CGCGCAGCGGCTACAGGACGTGGCGCAAGCACCGCGCACGGTGCTGGTGG
TGGGCGGCGAGGGTGACGGGCTGCGCGTGCTGGTGCGCCGAGAATGCGAC
GTGCTGGCCGCCATCGACGGTGGCGGCGACGGCGTCGTCGACTCGCTCAA
CCTCAGCGTTGCCGCCGCCATCGCGCTGCACCATTTGCTGCCGCGGTAG
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protein sequence of Gvermi11590.t1

>Gvermi11590.t1 ID=Gvermi11590.t1|Name=Gvermi11590.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=183bp
MLNVLVGHRKHQGVAAQASALEYLPEHELSARDGVLVALDSVSDPHNVGA
VLRSAHFLGADGVVVSARNCAPLGAATSKASAGAAEAVTAFATPSLPRLL
RRLRGEGWRVVGLAADGAQRLQDVAQAPRTVLVVGGEGDGLRVLVRRECD
VLAAIDGGGDGVVDSLNLSVAAAIALHHLLPR*
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mRNA from alignment at ScGOVlb_3404:1081149..1081697+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11590.t1 ID=Gvermi11590.t1|Name=Gvermi11590.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=549bp|location=Sequence derived from alignment at ScGOVlb_3404:1081149..1081697+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCAACGTGCTCGTGGGGCATCGCAAGCACCAGGGCGTGGCGGCACA
GGCCAGCGCGCTGGAGTACTTACCCGAGCACGAGTTGAGCGCGCGCGACG
GCGTGCTGGTGGCATTGGACAGCGTGTCAGACCCGCACAACGTAGGCGCC
GTGCTGCGGTCGGCGCACTTTCTGGGGGCGGATGGGGTGGTGGTGTCGGC
GCGCAACTGCGCGCCGCTGGGCGCAGCCACCAGCAAGGCGTCGGCGGGCG
CAGCTGAGGCGGTGACGGCATTCGCCACGCCGTCGCTGCCGCGGCTGCTG
CGACGACTGCGCGGCGAGGGTTGGCGCGTGGTGGGGCTGGCGGCCGACGG
CGCGCAGCGGCTACAGGACGTGGCGCAAGCACCGCGCACGGTGCTGGTGG
TGGGCGGCGAGGGTGACGGGCTGCGCGTGCTGGTGCGCCGAGAATGCGAC
GTGCTGGCCGCCATCGACGGTGGCGGCGACGGCGTCGTCGACTCGCTCAA
CCTCAGCGTTGCCGCCGCCATCGCGCTGCACCATTTGCTGCCGCGGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1081149..1081697+

>Gvermi11590.t1 ID=Gvermi11590.t1|Name=Gvermi11590.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=549bp|location=Sequence derived from alignment at ScGOVlb_3404:1081149..1081697+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCAACGTGCTCGTGGGGCATCGCAAGCACCAGGGCGTGGCGGCACA
GGCCAGCGCGCTGGAGTACTTACCCGAGCACGAGTTGAGCGCGCGCGACG
GCGTGCTGGTGGCATTGGACAGCGTGTCAGACCCGCACAACGTAGGCGCC
GTGCTGCGGTCGGCGCACTTTCTGGGGGCGGATGGGGTGGTGGTGTCGGC
GCGCAACTGCGCGCCGCTGGGCGCAGCCACCAGCAAGGCGTCGGCGGGCG
CAGCTGAGGCGGTGACGGCATTCGCCACGCCGTCGCTGCCGCGGCTGCTG
CGACGACTGCGCGGCGAGGGTTGGCGCGTGGTGGGGCTGGCGGCCGACGG
CGCGCAGCGGCTACAGGACGTGGCGCAAGCACCGCGCACGGTGCTGGTGG
TGGGCGGCGAGGGTGACGGGCTGCGCGTGCTGGTGCGCCGAGAATGCGAC
GTGCTGGCCGCCATCGACGGTGGCGGCGACGGCGTCGTCGACTCGCTCAA
CCTCAGCGTTGCCGCCGCCATCGCGCTGCACCATTTGCTGCCGCGGTAG
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