Gvermi11581.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11581.t1
Unique NameGvermi11581.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length371
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1058585..1059697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP06004
PFAMsC2,Copine
Max annot lvl3041|Chlorophyta
Evalue6.55e-11
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota,37MKV@33090|Viridiplantae,34J60@3041|Chlorophyta
DescriptionCopine
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11581Gvermi11581Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1058585..1059697 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11581.t1.stop1Gvermi11581.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1058585..1058587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11581.t1.CDS1Gvermi11581.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1058585..1059697 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11581.t1.exon1Gvermi11581.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1058585..1059697 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11581.t1.start1Gvermi11581.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1059695..1059697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11581.t1Gvermi11581.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1058585..1059697 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11581.t1 ID=Gvermi11581.t1|Name=Gvermi11581.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=371bp
MQQHRGSYVELKVAAANLRGRRLDPFAVLARASAAADEEIARTEIVWCDC
NPAFVTSFEVPLHNNVVPECEFRLLLYSKSSRSDELRKNTLLGYADFSLQ
RVLSKQDGVIERVLRCKSGKSDRKRGSVVICGEQVTPSDVKHMYSIQFGF
SKQSNAWGPYSGRKAKRCFYVIYRAIINGVADEDWTPVYRSEIVDPYNRP
NEDMMFEGASIRAEHLYGMDENRGLRFEVFHYNSSGPHIPLGFVQTSASA
FKYAKPGGKLYMVPVPGSIMKQAHVTLEMAKMGLTTRRGGVSSVFCLRAT
GFTWGRPGEGLEGDDYLERDAYGRTGIDHIEDREQMPRGVSYMGSRIHRL
NSDNDDEDGDDEAGGDGAAG*
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spliced messenger RNA

>Gvermi11581.t1 ID=Gvermi11581.t1|Name=Gvermi11581.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at ScGOVlb_3404:1058585..1059697- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCAGCACCGCGGTTCGTATGTGGAGCTCAAGGTGGCCGCCGCCAA
CCTTCGAGGCCGGCGCCTGGACCCGTTTGCCGTGCTGGCGAGGGCGTCCG
CTGCGGCTGACGAAGAGATTGCAAGGACGGAGATCGTGTGGTGCGACTGT
AATCCCGCCTTTGTGACCTCCTTCGAGGTGCCGTTGCACAACAACGTTGT
GCCGGAGTGCGAGTTTCGCCTCTTGCTGTACTCGAAGAGCAGTCGCTCCG
ATGAGTTGAGGAAGAATACACTGCTGGGCTATGCTGACTTTTCGCTGCAG
AGGGTTTTGTCCAAACAGGACGGCGTGATTGAGCGTGTGCTGAGGTGCAA
GTCGGGCAAGTCCGATCGAAAGCGGGGTAGTGTTGTGATTTGCGGCGAAC
AAGTTACGCCGTCGGATGTTAAACACATGTATTCTATTCAGTTTGGCTTC
TCGAAACAAAGCAACGCGTGGGGGCCGTACTCAGGGAGGAAAGCCAAGCG
CTGCTTTTACGTCATCTATCGAGCCATCATTAACGGCGTAGCCGATGAAG
ATTGGACGCCTGTGTATCGCTCTGAGATTGTTGATCCGTATAATAGGCCG
AATGAGGACATGATGTTTGAGGGCGCGTCCATCCGCGCGGAGCATCTGTA
CGGCATGGACGAAAATCGGGGGCTGCGGTTCGAGGTTTTCCACTACAACT
CCTCGGGGCCTCACATACCGCTGGGATTCGTGCAGACGTCGGCGTCTGCC
TTCAAGTATGCAAAGCCGGGAGGCAAGTTGTACATGGTGCCTGTGCCAGG
CTCTATAATGAAGCAGGCGCATGTCACGTTGGAGATGGCCAAGATGGGGC
TGACAACGAGACGGGGGGGTGTGAGCAGCGTGTTCTGCCTGCGGGCTACG
GGCTTTACTTGGGGTCGTCCGGGTGAGGGGCTAGAGGGGGATGATTACCT
GGAGAGGGATGCATACGGGCGCACTGGAATTGACCACATCGAAGATCGGG
AGCAAATGCCGCGTGGCGTAAGCTACATGGGAAGCCGCATCCACCGACTG
AACAGCGACAACGATGATGAAGACGGAGACGATGAGGCCGGCGGCGACGG
TGCAGCGGGATGA
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protein sequence of Gvermi11581.t1

>Gvermi11581.t1 ID=Gvermi11581.t1|Name=Gvermi11581.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=371bp
MQQHRGSYVELKVAAANLRGRRLDPFAVLARASAAADEEIARTEIVWCDC
NPAFVTSFEVPLHNNVVPECEFRLLLYSKSSRSDELRKNTLLGYADFSLQ
RVLSKQDGVIERVLRCKSGKSDRKRGSVVICGEQVTPSDVKHMYSIQFGF
SKQSNAWGPYSGRKAKRCFYVIYRAIINGVADEDWTPVYRSEIVDPYNRP
NEDMMFEGASIRAEHLYGMDENRGLRFEVFHYNSSGPHIPLGFVQTSASA
FKYAKPGGKLYMVPVPGSIMKQAHVTLEMAKMGLTTRRGGVSSVFCLRAT
GFTWGRPGEGLEGDDYLERDAYGRTGIDHIEDREQMPRGVSYMGSRIHRL
NSDNDDEDGDDEAGGDGAAG*
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mRNA from alignment at ScGOVlb_3404:1058585..1059697-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11581.t1 ID=Gvermi11581.t1|Name=Gvermi11581.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1113bp|location=Sequence derived from alignment at ScGOVlb_3404:1058585..1059697- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCAGCACCGCGGTTCGTATGTGGAGCTCAAGGTGGCCGCCGCCAA
CCTTCGAGGCCGGCGCCTGGACCCGTTTGCCGTGCTGGCGAGGGCGTCCG
CTGCGGCTGACGAAGAGATTGCAAGGACGGAGATCGTGTGGTGCGACTGT
AATCCCGCCTTTGTGACCTCCTTCGAGGTGCCGTTGCACAACAACGTTGT
GCCGGAGTGCGAGTTTCGCCTCTTGCTGTACTCGAAGAGCAGTCGCTCCG
ATGAGTTGAGGAAGAATACACTGCTGGGCTATGCTGACTTTTCGCTGCAG
AGGGTTTTGTCCAAACAGGACGGCGTGATTGAGCGTGTGCTGAGGTGCAA
GTCGGGCAAGTCCGATCGAAAGCGGGGTAGTGTTGTGATTTGCGGCGAAC
AAGTTACGCCGTCGGATGTTAAACACATGTATTCTATTCAGTTTGGCTTC
TCGAAACAAAGCAACGCGTGGGGGCCGTACTCAGGGAGGAAAGCCAAGCG
CTGCTTTTACGTCATCTATCGAGCCATCATTAACGGCGTAGCCGATGAAG
ATTGGACGCCTGTGTATCGCTCTGAGATTGTTGATCCGTATAATAGGCCG
AATGAGGACATGATGTTTGAGGGCGCGTCCATCCGCGCGGAGCATCTGTA
CGGCATGGACGAAAATCGGGGGCTGCGGTTCGAGGTTTTCCACTACAACT
CCTCGGGGCCTCACATACCGCTGGGATTCGTGCAGACGTCGGCGTCTGCC
TTCAAGTATGCAAAGCCGGGAGGCAAGTTGTACATGGTGCCTGTGCCAGG
CTCTATAATGAAGCAGGCGCATGTCACGTTGGAGATGGCCAAGATGGGGC
TGACAACGAGACGGGGGGGTGTGAGCAGCGTGTTCTGCCTGCGGGCTACG
GGCTTTACTTGGGGTCGTCCGGGTGAGGGGCTAGAGGGGGATGATTACCT
GGAGAGGGATGCATACGGGCGCACTGGAATTGACCACATCGAAGATCGGG
AGCAAATGCCGCGTGGCGTAAGCTACATGGGAAGCCGCATCCACCGACTG
AACAGCGACAACGATGATGAAGACGGAGACGATGAGGCCGGCGGCGACGG
TGCAGCGGGATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1058585..1059697-

>Gvermi11581.t1 ID=Gvermi11581.t1|Name=Gvermi11581.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1113bp|location=Sequence derived from alignment at ScGOVlb_3404:1058585..1059697- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGCAGCACCGCGGTTCGTATGTGGAGCTCAAGGTGGCCGCCGCCAA
CCTTCGAGGCCGGCGCCTGGACCCGTTTGCCGTGCTGGCGAGGGCGTCCG
CTGCGGCTGACGAAGAGATTGCAAGGACGGAGATCGTGTGGTGCGACTGT
AATCCCGCCTTTGTGACCTCCTTCGAGGTGCCGTTGCACAACAACGTTGT
GCCGGAGTGCGAGTTTCGCCTCTTGCTGTACTCGAAGAGCAGTCGCTCCG
ATGAGTTGAGGAAGAATACACTGCTGGGCTATGCTGACTTTTCGCTGCAG
AGGGTTTTGTCCAAACAGGACGGCGTGATTGAGCGTGTGCTGAGGTGCAA
GTCGGGCAAGTCCGATCGAAAGCGGGGTAGTGTTGTGATTTGCGGCGAAC
AAGTTACGCCGTCGGATGTTAAACACATGTATTCTATTCAGTTTGGCTTC
TCGAAACAAAGCAACGCGTGGGGGCCGTACTCAGGGAGGAAAGCCAAGCG
CTGCTTTTACGTCATCTATCGAGCCATCATTAACGGCGTAGCCGATGAAG
ATTGGACGCCTGTGTATCGCTCTGAGATTGTTGATCCGTATAATAGGCCG
AATGAGGACATGATGTTTGAGGGCGCGTCCATCCGCGCGGAGCATCTGTA
CGGCATGGACGAAAATCGGGGGCTGCGGTTCGAGGTTTTCCACTACAACT
CCTCGGGGCCTCACATACCGCTGGGATTCGTGCAGACGTCGGCGTCTGCC
TTCAAGTATGCAAAGCCGGGAGGCAAGTTGTACATGGTGCCTGTGCCAGG
CTCTATAATGAAGCAGGCGCATGTCACGTTGGAGATGGCCAAGATGGGGC
TGACAACGAGACGGGGGGGTGTGAGCAGCGTGTTCTGCCTGCGGGCTACG
GGCTTTACTTGGGGTCGTCCGGGTGAGGGGCTAGAGGGGGATGATTACCT
GGAGAGGGATGCATACGGGCGCACTGGAATTGACCACATCGAAGATCGGG
AGCAAATGCCGCGTGGCGTAAGCTACATGGGAAGCCGCATCCACCGACTG
AACAGCGACAACGATGATGAAGACGGAGACGATGAGGCCGGCGGCGACGG
TGCAGCGGGATGA
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