Gvermi11576.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11576.t1
Unique NameGvermi11576.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length464
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1043297..1044688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1298867.AUES01000001_gene1772
Preferred nameMA20_34775
PFAMsM20_dimer,Peptidase_M20,Peptidase_M28
Max annot lvl28211|Alphaproteobacteria
KEGG rclassRC00064
KEGG koko:K02083
KEGG ReactionR02423
KEGG Pathwayko00230,ko01120,map00230,map01120
Evalue7.36e-75
EggNOG OGsCOG0624@1|root,COG0624@2|Bacteria,1MVUX@1224|Proteobacteria,2TR5X@28211|Alphaproteobacteria,3JRW7@41294|Bradyrhizobiaceae
EC3.5.3.9
DescriptionPeptidase family M28
COG categoryE
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11576Gvermi11576Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1043297..1044688 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11576.t1.stop1Gvermi11576.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1043297..1043299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11576.t1.CDS1Gvermi11576.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1043297..1044688 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11576.t1.exon1Gvermi11576.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1043297..1044688 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11576.t1.start1Gvermi11576.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1044686..1044688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11576.t1Gvermi11576.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1043297..1044688 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11576.t1 ID=Gvermi11576.t1|Name=Gvermi11576.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=464bp
MTAASFSSSTPVTSLALLLFCLCFLAVYRPKPHFDPPSRPPVVTNGTTHA
LQHAASHVVAQLHTLSTFSVSDRFLNRPFLSDASAQAQRELLRLMREAGL
QAFVDRAGNVRGTLACPAAATSRRTLLMGSHHDTVTNAGSYDGLLGVLSA
IAVTRLYRSSICSLPFDLSVIAFDDEEGNNAFSVTNFGARAFVGHDLSHV
TATPSFQAAYSSAFSAPHDVHASVRSAALTAAEARSLLAYVELHIEQGPV
LERASRALAAVNAIAGQTRMSVSLAGRAAHAGTAPMALRRDALTAAAELV
LHIEALALAHAHDHVVATVGRLHVAPGATNVVPGDVSFSVDVRSRTDSVR
KHVVQSIVRAVESVGQKRAIAVHVHVVHDVDAVHMSEWLVNILSDVAGGP
SLTSGAGHDAQFMSELTDVGMLFVRCRHGVSHSPEEYVSDGDIHQGLVAL
NAVIRRVAEKGAF*
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spliced messenger RNA

>Gvermi11576.t1 ID=Gvermi11576.t1|Name=Gvermi11576.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at ScGOVlb_3404:1043297..1044688- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCGCTTCTTTTTCGTCCAGCACGCCCGTCACTTCGCTTGCGCT
CCTGCTTTTCTGCCTCTGCTTCCTCGCCGTTTACCGCCCCAAGCCTCACT
TTGACCCTCCGTCGCGCCCGCCCGTCGTCACCAACGGCACCACCCACGCC
TTGCAACATGCCGCTTCTCATGTAGTCGCCCAGTTGCACACGCTCTCCAC
TTTCTCCGTCTCTGACCGCTTTCTCAACCGCCCTTTTCTCTCCGACGCCT
CCGCTCAAGCGCAGCGTGAGTTGCTGCGACTCATGCGCGAGGCCGGTCTC
CAAGCATTCGTTGACCGTGCCGGAAATGTCCGCGGCACGCTTGCGTGCCC
CGCCGCCGCCACTTCGCGCCGTACCTTGTTGATGGGCAGCCACCACGACA
CCGTCACCAACGCCGGTTCCTACGACGGTCTTTTGGGTGTGCTCTCGGCC
ATCGCTGTCACCCGTCTGTACCGTTCCTCCATATGCTCCCTCCCCTTCGA
CCTCTCCGTCATTGCCTTTGACGATGAAGAAGGAAACAACGCCTTCTCTG
TCACCAATTTTGGAGCGCGCGCCTTTGTCGGCCATGACTTGTCGCATGTC
ACTGCCACGCCGTCGTTTCAAGCCGCGTACAGCTCCGCGTTTTCGGCGCC
ACACGACGTGCACGCGTCTGTGCGCTCTGCCGCCCTCACCGCAGCCGAGG
CGCGCAGCTTGCTCGCGTACGTGGAGCTGCACATCGAGCAGGGGCCCGTG
CTGGAGCGAGCGAGTCGCGCGCTTGCCGCCGTCAACGCCATTGCGGGGCA
GACGCGCATGAGCGTCAGCCTTGCGGGCCGTGCTGCGCACGCGGGCACCG
CGCCCATGGCGCTCAGGCGCGACGCCCTCACCGCCGCCGCGGAACTCGTG
CTGCATATCGAGGCGCTGGCGCTCGCACATGCGCACGACCATGTGGTGGC
CACGGTTGGCCGGCTGCACGTCGCGCCGGGCGCCACCAACGTTGTGCCGG
GCGACGTTTCATTCTCCGTGGACGTTCGCTCGAGGACGGACTCGGTGCGA
AAGCACGTGGTGCAAAGCATTGTGCGTGCTGTTGAAAGTGTTGGACAAAA
GCGTGCAATTGCTGTGCACGTGCATGTTGTTCATGATGTGGACGCTGTGC
ACATGAGTGAATGGCTTGTGAACATATTGAGTGACGTCGCTGGTGGTCCT
TCACTCACTAGTGGCGCCGGCCATGATGCTCAGTTCATGTCAGAGCTGAC
GGATGTGGGAATGCTGTTCGTGCGATGCAGACATGGGGTCAGTCACAGTC
CTGAGGAATATGTCAGTGATGGTGACATTCACCAAGGTCTGGTGGCGTTG
AATGCCGTTATCCGGCGAGTGGCCGAGAAGGGGGCCTTCTGA
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protein sequence of Gvermi11576.t1

>Gvermi11576.t1 ID=Gvermi11576.t1|Name=Gvermi11576.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=464bp
MTAASFSSSTPVTSLALLLFCLCFLAVYRPKPHFDPPSRPPVVTNGTTHA
LQHAASHVVAQLHTLSTFSVSDRFLNRPFLSDASAQAQRELLRLMREAGL
QAFVDRAGNVRGTLACPAAATSRRTLLMGSHHDTVTNAGSYDGLLGVLSA
IAVTRLYRSSICSLPFDLSVIAFDDEEGNNAFSVTNFGARAFVGHDLSHV
TATPSFQAAYSSAFSAPHDVHASVRSAALTAAEARSLLAYVELHIEQGPV
LERASRALAAVNAIAGQTRMSVSLAGRAAHAGTAPMALRRDALTAAAELV
LHIEALALAHAHDHVVATVGRLHVAPGATNVVPGDVSFSVDVRSRTDSVR
KHVVQSIVRAVESVGQKRAIAVHVHVVHDVDAVHMSEWLVNILSDVAGGP
SLTSGAGHDAQFMSELTDVGMLFVRCRHGVSHSPEEYVSDGDIHQGLVAL
NAVIRRVAEKGAF*
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mRNA from alignment at ScGOVlb_3404:1043297..1044688-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11576.t1 ID=Gvermi11576.t1|Name=Gvermi11576.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at ScGOVlb_3404:1043297..1044688- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGCCGCTTCTTTTTCGTCCAGCACGCCCGTCACTTCGCTTGCGCT
CCTGCTTTTCTGCCTCTGCTTCCTCGCCGTTTACCGCCCCAAGCCTCACT
TTGACCCTCCGTCGCGCCCGCCCGTCGTCACCAACGGCACCACCCACGCC
TTGCAACATGCCGCTTCTCATGTAGTCGCCCAGTTGCACACGCTCTCCAC
TTTCTCCGTCTCTGACCGCTTTCTCAACCGCCCTTTTCTCTCCGACGCCT
CCGCTCAAGCGCAGCGTGAGTTGCTGCGACTCATGCGCGAGGCCGGTCTC
CAAGCATTCGTTGACCGTGCCGGAAATGTCCGCGGCACGCTTGCGTGCCC
CGCCGCCGCCACTTCGCGCCGTACCTTGTTGATGGGCAGCCACCACGACA
CCGTCACCAACGCCGGTTCCTACGACGGTCTTTTGGGTGTGCTCTCGGCC
ATCGCTGTCACCCGTCTGTACCGTTCCTCCATATGCTCCCTCCCCTTCGA
CCTCTCCGTCATTGCCTTTGACGATGAAGAAGGAAACAACGCCTTCTCTG
TCACCAATTTTGGAGCGCGCGCCTTTGTCGGCCATGACTTGTCGCATGTC
ACTGCCACGCCGTCGTTTCAAGCCGCGTACAGCTCCGCGTTTTCGGCGCC
ACACGACGTGCACGCGTCTGTGCGCTCTGCCGCCCTCACCGCAGCCGAGG
CGCGCAGCTTGCTCGCGTACGTGGAGCTGCACATCGAGCAGGGGCCCGTG
CTGGAGCGAGCGAGTCGCGCGCTTGCCGCCGTCAACGCCATTGCGGGGCA
GACGCGCATGAGCGTCAGCCTTGCGGGCCGTGCTGCGCACGCGGGCACCG
CGCCCATGGCGCTCAGGCGCGACGCCCTCACCGCCGCCGCGGAACTCGTG
CTGCATATCGAGGCGCTGGCGCTCGCACATGCGCACGACCATGTGGTGGC
CACGGTTGGCCGGCTGCACGTCGCGCCGGGCGCCACCAACGTTGTGCCGG
GCGACGTTTCATTCTCCGTGGACGTTCGCTCGAGGACGGACTCGGTGCGA
AAGCACGTGGTGCAAAGCATTGTGCGTGCTGTTGAAAGTGTTGGACAAAA
GCGTGCAATTGCTGTGCACGTGCATGTTGTTCATGATGTGGACGCTGTGC
ACATGAGTGAATGGCTTGTGAACATATTGAGTGACGTCGCTGGTGGTCCT
TCACTCACTAGTGGCGCCGGCCATGATGCTCAGTTCATGTCAGAGCTGAC
GGATGTGGGAATGCTGTTCGTGCGATGCAGACATGGGGTCAGTCACAGTC
CTGAGGAATATGTCAGTGATGGTGACATTCACCAAGGTCTGGTGGCGTTG
AATGCCGTTATCCGGCGAGTGGCCGAGAAGGGGGCCTTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1043297..1044688-

>Gvermi11576.t1 ID=Gvermi11576.t1|Name=Gvermi11576.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1392bp|location=Sequence derived from alignment at ScGOVlb_3404:1043297..1044688- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCGCCGCTTCTTTTTCGTCCAGCACGCCCGTCACTTCGCTTGCGCT
CCTGCTTTTCTGCCTCTGCTTCCTCGCCGTTTACCGCCCCAAGCCTCACT
TTGACCCTCCGTCGCGCCCGCCCGTCGTCACCAACGGCACCACCCACGCC
TTGCAACATGCCGCTTCTCATGTAGTCGCCCAGTTGCACACGCTCTCCAC
TTTCTCCGTCTCTGACCGCTTTCTCAACCGCCCTTTTCTCTCCGACGCCT
CCGCTCAAGCGCAGCGTGAGTTGCTGCGACTCATGCGCGAGGCCGGTCTC
CAAGCATTCGTTGACCGTGCCGGAAATGTCCGCGGCACGCTTGCGTGCCC
CGCCGCCGCCACTTCGCGCCGTACCTTGTTGATGGGCAGCCACCACGACA
CCGTCACCAACGCCGGTTCCTACGACGGTCTTTTGGGTGTGCTCTCGGCC
ATCGCTGTCACCCGTCTGTACCGTTCCTCCATATGCTCCCTCCCCTTCGA
CCTCTCCGTCATTGCCTTTGACGATGAAGAAGGAAACAACGCCTTCTCTG
TCACCAATTTTGGAGCGCGCGCCTTTGTCGGCCATGACTTGTCGCATGTC
ACTGCCACGCCGTCGTTTCAAGCCGCGTACAGCTCCGCGTTTTCGGCGCC
ACACGACGTGCACGCGTCTGTGCGCTCTGCCGCCCTCACCGCAGCCGAGG
CGCGCAGCTTGCTCGCGTACGTGGAGCTGCACATCGAGCAGGGGCCCGTG
CTGGAGCGAGCGAGTCGCGCGCTTGCCGCCGTCAACGCCATTGCGGGGCA
GACGCGCATGAGCGTCAGCCTTGCGGGCCGTGCTGCGCACGCGGGCACCG
CGCCCATGGCGCTCAGGCGCGACGCCCTCACCGCCGCCGCGGAACTCGTG
CTGCATATCGAGGCGCTGGCGCTCGCACATGCGCACGACCATGTGGTGGC
CACGGTTGGCCGGCTGCACGTCGCGCCGGGCGCCACCAACGTTGTGCCGG
GCGACGTTTCATTCTCCGTGGACGTTCGCTCGAGGACGGACTCGGTGCGA
AAGCACGTGGTGCAAAGCATTGTGCGTGCTGTTGAAAGTGTTGGACAAAA
GCGTGCAATTGCTGTGCACGTGCATGTTGTTCATGATGTGGACGCTGTGC
ACATGAGTGAATGGCTTGTGAACATATTGAGTGACGTCGCTGGTGGTCCT
TCACTCACTAGTGGCGCCGGCCATGATGCTCAGTTCATGTCAGAGCTGAC
GGATGTGGGAATGCTGTTCGTGCGATGCAGACATGGGGTCAGTCACAGTC
CTGAGGAATATGTCAGTGATGGTGACATTCACCAAGGTCTGGTGGCGTTG
AATGCCGTTATCCGGCGAGTGGCCGAGAAGGGGGCCTTCTGA
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