Gvermi11572.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11572.t1
Unique NameGvermi11572.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length540
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1031496..1033115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog106582.XP_004573818.1
PFAMsTrypsin
Max annot lvl33208|Metazoa
KEGG koko:K08664,ko:K09628
Evalue5.73e-34
EggNOG OGsCOG5640@1|root,KOG3627@2759|Eukaryota,39U11@33154|Opisthokonta,3BDTB@33208|Metazoa,3D0T5@33213|Bilateria,482CU@7711|Chordata,48ZVH@7742|Vertebrata,49QD9@7898|Actinopterygii
DescriptionTransmembrane protease serine 9-like
COG categoryE
BRITEko00000,ko00537,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11572Gvermi11572Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1031496..1033115 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11572.t1.stop1Gvermi11572.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1031496..1031498 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11572.t1.CDS1Gvermi11572.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1031496..1033115 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11572.t1.exon1Gvermi11572.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1031496..1033115 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11572.t1.start1Gvermi11572.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1033113..1033115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11572.t1Gvermi11572.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1031496..1033115 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11572.t1 ID=Gvermi11572.t1|Name=Gvermi11572.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=540bp
MYSLERQPLFTRICGLYVLILVLVLGAHASEIDGSKVPIETPKNRSQVCP
KVLPIFSEELRPKSRRSPDRIVNGDRAPHMRFYMAALVSQGRGFFCSASL
LSKYWAITAAHCVIDRRWDVLRVGGTSILDGTDYEIERTISHPRYFRSGQ
GTEENDVQLIKLKNPVPSGSKFFYINNDATYPATTSFARTCGYGDTYGTA
LPSTGLLREVDVPIQDSLVCQNRYEDINVLIKETSHICAGYEKGGCDSCY
GDSGGPLFTVGKELILVQIGIVSFGFECAVPLRPGVYTRLSTYIPWMSES
GAVFSTTTDGVNIYGHNAQPTKRPVEKFDEDKDSTGAEPNDGQAEDNAGS
SQSSSYLETHSESDLEAGSSEISLTQEPKSACFPSNALVTLENGMEKKMM
DLIVGDRVRVGADDYSEVFMFTHRRRTGSFKFVRIECQTCETPLLLSLDH
VISSNGLLKPACEVQVGDLIIKASGQHSEVTHISHVYERGLFNPQTLDGR
IIVNDVLVTTYTTAIDKQIAHALLAPLRFYFRSFNWIMS*
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spliced messenger RNA

>Gvermi11572.t1 ID=Gvermi11572.t1|Name=Gvermi11572.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at ScGOVlb_3404:1031496..1033115- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACTCTTTGGAAAGACAACCGCTGTTTACTAGAATATGCGGACTTTA
TGTTTTGATTCTTGTTCTAGTCTTGGGTGCTCATGCTTCTGAGATAGACG
GGTCCAAAGTGCCCATTGAAACCCCGAAAAATCGTTCTCAAGTTTGCCCA
AAGGTGCTCCCTATTTTCTCCGAAGAACTGCGTCCTAAATCAAGAAGAAG
TCCGGATAGAATCGTTAACGGTGATCGTGCTCCGCATATGAGGTTCTATA
TGGCAGCATTGGTATCACAGGGTCGCGGATTTTTCTGCTCAGCTTCTTTG
CTTTCGAAATATTGGGCAATAACAGCTGCGCATTGTGTTATCGACAGACG
TTGGGACGTGCTGAGAGTGGGGGGGACTTCTATTCTGGATGGAACTGATT
ACGAAATTGAAAGGACAATATCACATCCGAGATACTTTCGCAGCGGTCAA
GGCACCGAAGAAAACGATGTGCAGCTGATCAAGTTGAAAAATCCAGTCCC
CAGCGGATCGAAATTCTTTTACATCAATAACGACGCAACTTATCCCGCAA
CCACTTCCTTTGCTCGAACGTGCGGCTATGGAGACACATACGGAACAGCT
TTACCAAGCACTGGGCTGCTTCGTGAGGTGGATGTACCAATTCAAGATTC
TTTAGTATGTCAGAATCGTTATGAAGACATTAACGTTCTTATCAAAGAAA
CATCACACATATGCGCTGGATACGAAAAAGGTGGGTGTGATTCATGTTAC
GGTGACAGCGGGGGACCTTTGTTTACGGTTGGAAAAGAATTGATACTGGT
TCAGATAGGTATTGTATCGTTTGGGTTTGAATGCGCCGTTCCTCTCAGGC
CAGGCGTATATACAAGGTTGTCTACCTATATTCCATGGATGTCTGAAAGT
GGAGCTGTGTTTAGTACAACAACCGATGGTGTGAACATATATGGACATAA
TGCTCAACCGACCAAGCGACCCGTTGAAAAGTTTGATGAAGATAAAGATT
CAACGGGTGCTGAGCCAAATGATGGGCAAGCAGAAGATAATGCTGGGTCG
AGTCAGAGCTCATCATACTTAGAAACGCATTCTGAGTCAGATTTAGAGGC
TGGGTCATCTGAAATAAGTCTAACACAAGAACCAAAGTCCGCCTGTTTCC
CATCAAACGCCCTTGTTACTCTTGAAAATGGCATGGAAAAGAAAATGATG
GACTTGATAGTTGGGGATCGAGTAAGAGTAGGCGCAGATGATTACTCGGA
AGTGTTTATGTTCACGCACAGACGCCGTACTGGAAGTTTCAAGTTTGTCC
GAATTGAATGTCAAACCTGTGAGACGCCACTACTGTTGTCCTTGGATCAT
GTGATTTCAAGCAATGGATTGCTGAAACCTGCCTGTGAAGTTCAAGTTGG
GGACCTGATCATAAAGGCTTCAGGTCAGCATTCAGAAGTTACTCACATTT
CACATGTGTACGAAAGAGGACTCTTCAACCCACAGACCTTGGATGGAAGA
ATCATTGTGAATGATGTTTTGGTGACCACCTACACGACAGCGATAGACAA
ACAAATAGCTCACGCTCTCCTAGCTCCGTTAAGGTTCTATTTTAGAAGCT
TTAATTGGATCATGAGCTAA
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protein sequence of Gvermi11572.t1

>Gvermi11572.t1 ID=Gvermi11572.t1|Name=Gvermi11572.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=540bp
MYSLERQPLFTRICGLYVLILVLVLGAHASEIDGSKVPIETPKNRSQVCP
KVLPIFSEELRPKSRRSPDRIVNGDRAPHMRFYMAALVSQGRGFFCSASL
LSKYWAITAAHCVIDRRWDVLRVGGTSILDGTDYEIERTISHPRYFRSGQ
GTEENDVQLIKLKNPVPSGSKFFYINNDATYPATTSFARTCGYGDTYGTA
LPSTGLLREVDVPIQDSLVCQNRYEDINVLIKETSHICAGYEKGGCDSCY
GDSGGPLFTVGKELILVQIGIVSFGFECAVPLRPGVYTRLSTYIPWMSES
GAVFSTTTDGVNIYGHNAQPTKRPVEKFDEDKDSTGAEPNDGQAEDNAGS
SQSSSYLETHSESDLEAGSSEISLTQEPKSACFPSNALVTLENGMEKKMM
DLIVGDRVRVGADDYSEVFMFTHRRRTGSFKFVRIECQTCETPLLLSLDH
VISSNGLLKPACEVQVGDLIIKASGQHSEVTHISHVYERGLFNPQTLDGR
IIVNDVLVTTYTTAIDKQIAHALLAPLRFYFRSFNWIMS*
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mRNA from alignment at ScGOVlb_3404:1031496..1033115-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11572.t1 ID=Gvermi11572.t1|Name=Gvermi11572.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at ScGOVlb_3404:1031496..1033115- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACTCTTTGGAAAGACAACCGCTGTTTACTAGAATATGCGGACTTTA
TGTTTTGATTCTTGTTCTAGTCTTGGGTGCTCATGCTTCTGAGATAGACG
GGTCCAAAGTGCCCATTGAAACCCCGAAAAATCGTTCTCAAGTTTGCCCA
AAGGTGCTCCCTATTTTCTCCGAAGAACTGCGTCCTAAATCAAGAAGAAG
TCCGGATAGAATCGTTAACGGTGATCGTGCTCCGCATATGAGGTTCTATA
TGGCAGCATTGGTATCACAGGGTCGCGGATTTTTCTGCTCAGCTTCTTTG
CTTTCGAAATATTGGGCAATAACAGCTGCGCATTGTGTTATCGACAGACG
TTGGGACGTGCTGAGAGTGGGGGGGACTTCTATTCTGGATGGAACTGATT
ACGAAATTGAAAGGACAATATCACATCCGAGATACTTTCGCAGCGGTCAA
GGCACCGAAGAAAACGATGTGCAGCTGATCAAGTTGAAAAATCCAGTCCC
CAGCGGATCGAAATTCTTTTACATCAATAACGACGCAACTTATCCCGCAA
CCACTTCCTTTGCTCGAACGTGCGGCTATGGAGACACATACGGAACAGCT
TTACCAAGCACTGGGCTGCTTCGTGAGGTGGATGTACCAATTCAAGATTC
TTTAGTATGTCAGAATCGTTATGAAGACATTAACGTTCTTATCAAAGAAA
CATCACACATATGCGCTGGATACGAAAAAGGTGGGTGTGATTCATGTTAC
GGTGACAGCGGGGGACCTTTGTTTACGGTTGGAAAAGAATTGATACTGGT
TCAGATAGGTATTGTATCGTTTGGGTTTGAATGCGCCGTTCCTCTCAGGC
CAGGCGTATATACAAGGTTGTCTACCTATATTCCATGGATGTCTGAAAGT
GGAGCTGTGTTTAGTACAACAACCGATGGTGTGAACATATATGGACATAA
TGCTCAACCGACCAAGCGACCCGTTGAAAAGTTTGATGAAGATAAAGATT
CAACGGGTGCTGAGCCAAATGATGGGCAAGCAGAAGATAATGCTGGGTCG
AGTCAGAGCTCATCATACTTAGAAACGCATTCTGAGTCAGATTTAGAGGC
TGGGTCATCTGAAATAAGTCTAACACAAGAACCAAAGTCCGCCTGTTTCC
CATCAAACGCCCTTGTTACTCTTGAAAATGGCATGGAAAAGAAAATGATG
GACTTGATAGTTGGGGATCGAGTAAGAGTAGGCGCAGATGATTACTCGGA
AGTGTTTATGTTCACGCACAGACGCCGTACTGGAAGTTTCAAGTTTGTCC
GAATTGAATGTCAAACCTGTGAGACGCCACTACTGTTGTCCTTGGATCAT
GTGATTTCAAGCAATGGATTGCTGAAACCTGCCTGTGAAGTTCAAGTTGG
GGACCTGATCATAAAGGCTTCAGGTCAGCATTCAGAAGTTACTCACATTT
CACATGTGTACGAAAGAGGACTCTTCAACCCACAGACCTTGGATGGAAGA
ATCATTGTGAATGATGTTTTGGTGACCACCTACACGACAGCGATAGACAA
ACAAATAGCTCACGCTCTCCTAGCTCCGTTAAGGTTCTATTTTAGAAGCT
TTAATTGGATCATGAGCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:1031496..1033115-

>Gvermi11572.t1 ID=Gvermi11572.t1|Name=Gvermi11572.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1620bp|location=Sequence derived from alignment at ScGOVlb_3404:1031496..1033115- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTACTCTTTGGAAAGACAACCGCTGTTTACTAGAATATGCGGACTTTA
TGTTTTGATTCTTGTTCTAGTCTTGGGTGCTCATGCTTCTGAGATAGACG
GGTCCAAAGTGCCCATTGAAACCCCGAAAAATCGTTCTCAAGTTTGCCCA
AAGGTGCTCCCTATTTTCTCCGAAGAACTGCGTCCTAAATCAAGAAGAAG
TCCGGATAGAATCGTTAACGGTGATCGTGCTCCGCATATGAGGTTCTATA
TGGCAGCATTGGTATCACAGGGTCGCGGATTTTTCTGCTCAGCTTCTTTG
CTTTCGAAATATTGGGCAATAACAGCTGCGCATTGTGTTATCGACAGACG
TTGGGACGTGCTGAGAGTGGGGGGGACTTCTATTCTGGATGGAACTGATT
ACGAAATTGAAAGGACAATATCACATCCGAGATACTTTCGCAGCGGTCAA
GGCACCGAAGAAAACGATGTGCAGCTGATCAAGTTGAAAAATCCAGTCCC
CAGCGGATCGAAATTCTTTTACATCAATAACGACGCAACTTATCCCGCAA
CCACTTCCTTTGCTCGAACGTGCGGCTATGGAGACACATACGGAACAGCT
TTACCAAGCACTGGGCTGCTTCGTGAGGTGGATGTACCAATTCAAGATTC
TTTAGTATGTCAGAATCGTTATGAAGACATTAACGTTCTTATCAAAGAAA
CATCACACATATGCGCTGGATACGAAAAAGGTGGGTGTGATTCATGTTAC
GGTGACAGCGGGGGACCTTTGTTTACGGTTGGAAAAGAATTGATACTGGT
TCAGATAGGTATTGTATCGTTTGGGTTTGAATGCGCCGTTCCTCTCAGGC
CAGGCGTATATACAAGGTTGTCTACCTATATTCCATGGATGTCTGAAAGT
GGAGCTGTGTTTAGTACAACAACCGATGGTGTGAACATATATGGACATAA
TGCTCAACCGACCAAGCGACCCGTTGAAAAGTTTGATGAAGATAAAGATT
CAACGGGTGCTGAGCCAAATGATGGGCAAGCAGAAGATAATGCTGGGTCG
AGTCAGAGCTCATCATACTTAGAAACGCATTCTGAGTCAGATTTAGAGGC
TGGGTCATCTGAAATAAGTCTAACACAAGAACCAAAGTCCGCCTGTTTCC
CATCAAACGCCCTTGTTACTCTTGAAAATGGCATGGAAAAGAAAATGATG
GACTTGATAGTTGGGGATCGAGTAAGAGTAGGCGCAGATGATTACTCGGA
AGTGTTTATGTTCACGCACAGACGCCGTACTGGAAGTTTCAAGTTTGTCC
GAATTGAATGTCAAACCTGTGAGACGCCACTACTGTTGTCCTTGGATCAT
GTGATTTCAAGCAATGGATTGCTGAAACCTGCCTGTGAAGTTCAAGTTGG
GGACCTGATCATAAAGGCTTCAGGTCAGCATTCAGAAGTTACTCACATTT
CACATGTGTACGAAAGAGGACTCTTCAACCCACAGACCTTGGATGGAAGA
ATCATTGTGAATGATGTTTTGGTGACCACCTACACGACAGCGATAGACAA
ACAAATAGCTCACGCTCTCCTAGCTCCGTTAAGGTTCTATTTTAGAAGCT
TTAATTGGATCATGAGCTAA
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