Gvermi11569.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11569.t1
Unique Name	Gvermi11569.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	462

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:1026275..1027660 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705872.1
PFAMs	PP2C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K04403,ko:K14803,ko:K17500
KEGG Pathway	ko04010,ko04064,ko04380,ko04620,ko04621,ko04668,ko05140,ko05145,ko05168,ko05169,map04010,map04064,map04380,map04620,map04621,map04668,map05140,map05145,map05168,map05169
KEGG Module	M00686
Evalue	3.54e-60
EggNOG OGs	COG0631@1\|root,KOG0698@2759\|Eukaryota
EC	3.1.3.16
Description	protein serine/threonine phosphatase activity
COG category	T
BRITE	ko00000,ko00001,ko00002,ko01000,ko01009,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11569	Gvermi11569	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 1026275..1027660 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11569.t1.start1	Gvermi11569.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 1026275..1026277 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11569.t1.CDS1	Gvermi11569.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 1026275..1027660 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11569.t1.exon1	Gvermi11569.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 1026275..1027660 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11569.t1.stop1	Gvermi11569.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 1027658..1027660 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11569.t1	Gvermi11569.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 1026275..1027660 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:1026275..1027660+
coding sequence from alignment at ScGOVlb_3404:1026275..1027660+

mRNA sequence

>Gvermi11569.t1 ID=Gvermi11569.t1|Name=Gvermi11569.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=462bp
MAPPPVLDKLIGAKYVRRKSNPSVTRDRDEDQQPSTNLHIKDTIRRALGN
AANRTFLTSTPKNHSLPPSTNSSQDNSPIAVLPPNPSTVDPPRLDADDGT
ERHFDVSTDHAVGACSSAGWQLLPSSTAGAPPVRSRKSNQDAYGVIAPFE
EALFVGVYDGHGAYGRAVSQLVRDQVPSTVREVLGSSSESRIRSADDRRR
NVVHAFTKAFSDAERSLCETSRQIDHAFSGTTATCILLDAEQLYVAWAGD
SRAVLAASDGTTLRAVDVSWDQKPSRTDEKKRVRAAGARVTRWKKNVGPQ
RVWLPNEWLPGLAMTRSIGDTVLSEFGVTTTPEVTVTRLGAREQFLVVAS
DGVWEFMSSMEVVQLVESLRARDVGAEDAARALVKEAARRWNANEHVVDD
ITAVVVYLPGGARERRERSLRDALRARRRSRFGGAVGVPLRVAHDGRLHA
FDASNGVSGDE*

spliced messenger RNA

>Gvermi11569.t1 ID=Gvermi11569.t1|Name=Gvermi11569.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1386bp|location=Sequence derived from alignment at ScGOVlb_3404:1026275..1027660+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCGCCGCCCGTGCTCGACAAGCTCATCGGCGCCAAGTACGTCAG
GAGGAAGAGCAACCCCTCCGTCACCCGCGACCGCGACGAGGACCAACAGC
CGTCCACAAACCTCCACATCAAAGACACCATCCGTCGTGCGCTCGGCAAC
GCCGCCAACCGCACCTTTCTAACTTCAACCCCTAAGAACCACTCACTACC
CCCATCCACCAACTCTTCCCAGGATAACTCACCGATAGCCGTGCTGCCGC
CTAACCCATCGACCGTCGACCCCCCCAGACTGGACGCTGATGACGGCACC
GAACGCCACTTCGACGTCAGCACCGATCACGCCGTGGGTGCATGCTCGTC
CGCAGGCTGGCAATTGCTTCCATCGTCAACGGCAGGCGCTCCGCCCGTTC
GCTCGCGCAAAAGTAACCAGGATGCGTATGGCGTGATTGCCCCGTTTGAA
GAGGCGCTGTTCGTGGGTGTGTACGACGGACATGGAGCGTATGGACGCGC
GGTGAGCCAACTGGTGCGCGACCAAGTGCCGAGCACAGTCCGCGAAGTGC
TCGGCTCCTCGTCCGAGTCTCGCATCCGCAGCGCGGACGATCGTCGGCGC
AACGTGGTGCACGCCTTCACCAAGGCGTTCAGCGACGCGGAACGCAGTCT
GTGCGAGACCAGCCGCCAGATTGACCACGCCTTCTCCGGGACGACGGCGA
CGTGCATACTGTTGGACGCGGAGCAGCTGTACGTGGCGTGGGCAGGCGAC
TCGCGGGCGGTGTTGGCGGCCAGCGACGGCACTACGCTGCGCGCGGTGGA
CGTGAGCTGGGATCAGAAGCCGTCCCGCACGGACGAGAAGAAGCGGGTGC
GCGCGGCAGGCGCGCGAGTGACGCGCTGGAAGAAGAACGTGGGACCGCAA
CGCGTGTGGCTGCCGAACGAGTGGCTGCCGGGTCTGGCCATGACGCGCAG
TATCGGAGATACGGTGTTGTCGGAGTTTGGGGTGACGACGACACCGGAGG
TGACGGTGACGCGGCTGGGCGCGCGCGAGCAGTTCTTGGTGGTGGCGTCG
GACGGCGTGTGGGAGTTCATGTCGAGCATGGAGGTGGTGCAATTGGTGGA
ATcgctgcgcgcgcgggacgtgggcgcggaggacgcggcgcgcgcgcTGG
TCAAGGAGGCGGCGCGCCGCTGGAACGCGAACGAGCACGTTGTGGACGAC
ATCACCGCCGTGGTGGTGTACCTGCCGGGCGGCGCGCGGGAGCGGCGCGA
GCGGAGTCTGCGGGACGCGCTGCGCGCGCGCCGCCGCTCGCGGTTCGGCG
GCGCGGTGGGCGTCCCGTTACGCGTCGCGCACGATGGCCGCCTCCACGCC
TTCGACGCCAGCAATGGCGTCAGCGGCGACGAGTGA

protein sequence of Gvermi11569.t1

>Gvermi11569.t1 ID=Gvermi11569.t1|Name=Gvermi11569.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=462bp
MAPPPVLDKLIGAKYVRRKSNPSVTRDRDEDQQPSTNLHIKDTIRRALGN
AANRTFLTSTPKNHSLPPSTNSSQDNSPIAVLPPNPSTVDPPRLDADDGT
ERHFDVSTDHAVGACSSAGWQLLPSSTAGAPPVRSRKSNQDAYGVIAPFE
EALFVGVYDGHGAYGRAVSQLVRDQVPSTVREVLGSSSESRIRSADDRRR
NVVHAFTKAFSDAERSLCETSRQIDHAFSGTTATCILLDAEQLYVAWAGD
SRAVLAASDGTTLRAVDVSWDQKPSRTDEKKRVRAAGARVTRWKKNVGPQ
RVWLPNEWLPGLAMTRSIGDTVLSEFGVTTTPEVTVTRLGAREQFLVVAS
DGVWEFMSSMEVVQLVESLRARDVGAEDAARALVKEAARRWNANEHVVDD
ITAVVVYLPGGARERRERSLRDALRARRRSRFGGAVGVPLRVAHDGRLHA
FDASNGVSGDE*

mRNA from alignment at ScGOVlb_3404:1026275..1027660+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11569.t1 ID=Gvermi11569.t1|Name=Gvermi11569.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1386bp|location=Sequence derived from alignment at ScGOVlb_3404:1026275..1027660+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCGCCGCCCGTGCTCGACAAGCTCATCGGCGCCAAGTACGTCAG
GAGGAAGAGCAACCCCTCCGTCACCCGCGACCGCGACGAGGACCAACAGC
CGTCCACAAACCTCCACATCAAAGACACCATCCGTCGTGCGCTCGGCAAC
GCCGCCAACCGCACCTTTCTAACTTCAACCCCTAAGAACCACTCACTACC
CCCATCCACCAACTCTTCCCAGGATAACTCACCGATAGCCGTGCTGCCGC
CTAACCCATCGACCGTCGACCCCCCCAGACTGGACGCTGATGACGGCACC
GAACGCCACTTCGACGTCAGCACCGATCACGCCGTGGGTGCATGCTCGTC
CGCAGGCTGGCAATTGCTTCCATCGTCAACGGCAGGCGCTCCGCCCGTTC
GCTCGCGCAAAAGTAACCAGGATGCGTATGGCGTGATTGCCCCGTTTGAA
GAGGCGCTGTTCGTGGGTGTGTACGACGGACATGGAGCGTATGGACGCGC
GGTGAGCCAACTGGTGCGCGACCAAGTGCCGAGCACAGTCCGCGAAGTGC
TCGGCTCCTCGTCCGAGTCTCGCATCCGCAGCGCGGACGATCGTCGGCGC
AACGTGGTGCACGCCTTCACCAAGGCGTTCAGCGACGCGGAACGCAGTCT
GTGCGAGACCAGCCGCCAGATTGACCACGCCTTCTCCGGGACGACGGCGA
CGTGCATACTGTTGGACGCGGAGCAGCTGTACGTGGCGTGGGCAGGCGAC
TCGCGGGCGGTGTTGGCGGCCAGCGACGGCACTACGCTGCGCGCGGTGGA
CGTGAGCTGGGATCAGAAGCCGTCCCGCACGGACGAGAAGAAGCGGGTGC
GCGCGGCAGGCGCGCGAGTGACGCGCTGGAAGAAGAACGTGGGACCGCAA
CGCGTGTGGCTGCCGAACGAGTGGCTGCCGGGTCTGGCCATGACGCGCAG
TATCGGAGATACGGTGTTGTCGGAGTTTGGGGTGACGACGACACCGGAGG
TGACGGTGACGCGGCTGGGCGCGCGCGAGCAGTTCTTGGTGGTGGCGTCG
GACGGCGTGTGGGAGTTCATGTCGAGCATGGAGGTGGTGCAATTGGTGGA
ATcgctgcgcgcgcgggacgtgggcgcggaggacgcggcgcgcgcgcTGG
TCAAGGAGGCGGCGCGCCGCTGGAACGCGAACGAGCACGTTGTGGACGAC
ATCACCGCCGTGGTGGTGTACCTGCCGGGCGGCGCGCGGGAGCGGCGCGA
GCGGAGTCTGCGGGACGCGCTGCGCGCGCGCCGCCGCTCGCGGTTCGGCG
GCGCGGTGGGCGTCCCGTTACGCGTCGCGCACGATGGCCGCCTCCACGCC
TTCGACGCCAGCAATGGCGTCAGCGGCGACGAGTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:1026275..1027660+

>Gvermi11569.t1 ID=Gvermi11569.t1|Name=Gvermi11569.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1386bp|location=Sequence derived from alignment at ScGOVlb_3404:1026275..1027660+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGCCGCCGCCCGTGCTCGACAAGCTCATCGGCGCCAAGTACGTCAG
GAGGAAGAGCAACCCCTCCGTCACCCGCGACCGCGACGAGGACCAACAGC
CGTCCACAAACCTCCACATCAAAGACACCATCCGTCGTGCGCTCGGCAAC
GCCGCCAACCGCACCTTTCTAACTTCAACCCCTAAGAACCACTCACTACC
CCCATCCACCAACTCTTCCCAGGATAACTCACCGATAGCCGTGCTGCCGC
CTAACCCATCGACCGTCGACCCCCCCAGACTGGACGCTGATGACGGCACC
GAACGCCACTTCGACGTCAGCACCGATCACGCCGTGGGTGCATGCTCGTC
CGCAGGCTGGCAATTGCTTCCATCGTCAACGGCAGGCGCTCCGCCCGTTC
GCTCGCGCAAAAGTAACCAGGATGCGTATGGCGTGATTGCCCCGTTTGAA
GAGGCGCTGTTCGTGGGTGTGTACGACGGACATGGAGCGTATGGACGCGC
GGTGAGCCAACTGGTGCGCGACCAAGTGCCGAGCACAGTCCGCGAAGTGC
TCGGCTCCTCGTCCGAGTCTCGCATCCGCAGCGCGGACGATCGTCGGCGC
AACGTGGTGCACGCCTTCACCAAGGCGTTCAGCGACGCGGAACGCAGTCT
GTGCGAGACCAGCCGCCAGATTGACCACGCCTTCTCCGGGACGACGGCGA
CGTGCATACTGTTGGACGCGGAGCAGCTGTACGTGGCGTGGGCAGGCGAC
TCGCGGGCGGTGTTGGCGGCCAGCGACGGCACTACGCTGCGCGCGGTGGA
CGTGAGCTGGGATCAGAAGCCGTCCCGCACGGACGAGAAGAAGCGGGTGC
GCGCGGCAGGCGCGCGAGTGACGCGCTGGAAGAAGAACGTGGGACCGCAA
CGCGTGTGGCTGCCGAACGAGTGGCTGCCGGGTCTGGCCATGACGCGCAG
TATCGGAGATACGGTGTTGTCGGAGTTTGGGGTGACGACGACACCGGAGG
TGACGGTGACGCGGCTGGGCGCGCGCGAGCAGTTCTTGGTGGTGGCGTCG
GACGGCGTGTGGGAGTTCATGTCGAGCATGGAGGTGGTGCAATTGGTGGA
ATcgctgcgcgcgcgggacgtgggcgcggaggacgcggcgcgcgcgcTGG
TCAAGGAGGCGGCGCGCCGCTGGAACGCGAACGAGCACGTTGTGGACGAC
ATCACCGCCGTGGTGGTGTACCTGCCGGGCGGCGCGCGGGAGCGGCGCGA
GCGGAGTCTGCGGGACGCGCTGCGCGCGCGCCGCCGCTCGCGGTTCGGCG
GCGCGGTGGGCGTCCCGTTACGCGTCGCGCACGATGGCCGCCTCCACGCC
TTCGACGCCAGCAATGGCGTCAGCGGCGACGAGTGA