Gvermi11566.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11566.t1
Unique NameGvermi11566.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length464
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:1002453..1003844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11566Gvermi11566Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 1002453..1003844 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11566.t1.stop1Gvermi11566.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 1002453..1002455 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11566.t1.CDS1Gvermi11566.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 1002453..1003844 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11566.t1.exon1Gvermi11566.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 1002453..1003844 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11566.t1.start1Gvermi11566.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 1003842..1003844 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11566.t1Gvermi11566.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 1002453..1003844 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11566.t1 ID=Gvermi11566.t1|Name=Gvermi11566.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=464bp
MVSLQVINALLNICLWFANAFFAKLLERVYIQTSRLEFQFTGKTFSLDSG
EVSMLLGLKSVLNALSCHKINPNRSYISSSWVSLLIFLSLISLPSEIWIE
TGIDEMNNCRPSVANSTGVCSSPWDGHSAVGIASAALLIQKSAWIDSEWD
IVYEGSSVNISLNDVHKSEIGNSVLPEAERRPLASKCKVHVLSCSKCGTL
TVGKDNGTFDTIITNASIVDDPNHCRKTSDKNYCRGDLTYDRATGLAFFF
WSIRVKDENGERRIATKGIEVLLNDRETERVLTTNETIWEIIPDDRRTRV
YSISCSSTGLHWTDLTRAVSIYRTVQMESPGEKKANVNGNIKNVQPLTKT
DVIKSLFALKAEDNGSNCNGLVPQYTRCGTFDISRASILLAVNSFAMLIY
IGLLLAGRKQKYVTLPTNAAAWKRYAIGVREGGGDFIVTTETENLESRLM
VVDVAKHMSVFFS*
back to top

spliced messenger RNA

>Gvermi11566.t1 ID=Gvermi11566.t1|Name=Gvermi11566.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at ScGOVlb_3404:1002453..1003844- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTCTCTGCAGGTCATAAACGCCTTGCTGAATATTTGTCTCTGGTT
CGCAAATGCCTTTTTTGCCAAGTTGCTGGAAAGGGTATACATTCAAACCT
CCAGACTAGAATTTCAATTCACCGGAAAGACGTTTTCATTGGATTCTGGA
GAAGTAAGCATGCTCCTTGGACTAAAATCAGTGCTGAATGCTCTCTCTTG
TCACAAGATCAATCCCAACAGGAGCTATATTTCTTCATCATGGGTATCTT
TACTCATATTCCTTTCTCTCATTTCTCTACCGTCCGAAATATGGATCGAG
ACCGGAATTGACGAGATGAATAACTGCCGACCATCGGTCGCGAACAGTAC
CGGAGTATGTTCTTCGCCATGGGACGGTCATTCCGCCGTTGGAATAGCTT
CAGCCGCGTTGCTTATACAGAAGTCTGCATGGATTGATTCTGAGTGGGAC
ATAGTTTACGAAGGCTCCAGCGTCAACATCAGTCTAAATGACGTTCACAA
GAGTGAGATTGGCAATTCTGTTTTACCAGAGGCAGAAAGAAGACCTTTAG
CAAGCAAATGCAAAGTTCATGTCTTATCATGTTCAAAATGTGGAACGCTG
ACCGTTGGAAAGGATAATGGTACGTTTGACACCATTATTACGAATGCATC
AATTGTGGACGATCCCAATCACTGTCGCAAAACCAGCGATAAAAACTATT
GTCGCGGTGACTTGACTTACGATAGGGCAACTGGTCTCGCATTCTTTTTT
TGGTCAATTCGAGTCAAAGATGAGAATGGCGAACGGAGAATCGCGACAAA
GGGCATTGAGGTACTTTTGAACGATAGAGAGACCGAAAGGGTTCTTACTA
CCAACGAAACTATTTGGGAAATCATCCCCGATGATAGAAGGACGAGGGTG
TACTCTATTTCTTGTTCTTCAACGGGTTTACATTGGACAGATTTAACCAG
AGCTGTATCAATCTACAGGACAGTTCAAATGGAAAGCCCTGGTGAGAAGA
AAGCGAATGTTAACGGAAACATTAAAAACGTTCAGCCATTGACGAAGACT
GACGTCATCAAGTCTTTGTTTGCCCTCAAGGCGGAGGATAATGGCTCAAA
CTGCAATGGCTTAGTACCACAGTACACGCGTTGCGGCACTTTCGATATTT
CTAGAGCATCGATTCTTTTGGCTGTGAATTCTTTCGCTATGCTCATTTAC
ATAGGTCTCTTGCTGGCTGGACGCAAACAAAAGTATGTTACACTACCCAC
TAATGCCGCTGCGTGGAAGAGATATGCCATAGGAGTGCGAGAAGGAGGTG
GAGATTTCATTGTCACGACTGAAACTGAGAATCTGGAAAGCAGATTAATG
GTTGTCGATGTTGCCAAGCATATGTCAGTTTTTTTTTCATGA
back to top

protein sequence of Gvermi11566.t1

>Gvermi11566.t1 ID=Gvermi11566.t1|Name=Gvermi11566.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=464bp
MVSLQVINALLNICLWFANAFFAKLLERVYIQTSRLEFQFTGKTFSLDSG
EVSMLLGLKSVLNALSCHKINPNRSYISSSWVSLLIFLSLISLPSEIWIE
TGIDEMNNCRPSVANSTGVCSSPWDGHSAVGIASAALLIQKSAWIDSEWD
IVYEGSSVNISLNDVHKSEIGNSVLPEAERRPLASKCKVHVLSCSKCGTL
TVGKDNGTFDTIITNASIVDDPNHCRKTSDKNYCRGDLTYDRATGLAFFF
WSIRVKDENGERRIATKGIEVLLNDRETERVLTTNETIWEIIPDDRRTRV
YSISCSSTGLHWTDLTRAVSIYRTVQMESPGEKKANVNGNIKNVQPLTKT
DVIKSLFALKAEDNGSNCNGLVPQYTRCGTFDISRASILLAVNSFAMLIY
IGLLLAGRKQKYVTLPTNAAAWKRYAIGVREGGGDFIVTTETENLESRLM
VVDVAKHMSVFFS*
back to top

mRNA from alignment at ScGOVlb_3404:1002453..1003844-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11566.t1 ID=Gvermi11566.t1|Name=Gvermi11566.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1392bp|location=Sequence derived from alignment at ScGOVlb_3404:1002453..1003844- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGTCTCTGCAGGTCATAAACGCCTTGCTGAATATTTGTCTCTGGTT
CGCAAATGCCTTTTTTGCCAAGTTGCTGGAAAGGGTATACATTCAAACCT
CCAGACTAGAATTTCAATTCACCGGAAAGACGTTTTCATTGGATTCTGGA
GAAGTAAGCATGCTCCTTGGACTAAAATCAGTGCTGAATGCTCTCTCTTG
TCACAAGATCAATCCCAACAGGAGCTATATTTCTTCATCATGGGTATCTT
TACTCATATTCCTTTCTCTCATTTCTCTACCGTCCGAAATATGGATCGAG
ACCGGAATTGACGAGATGAATAACTGCCGACCATCGGTCGCGAACAGTAC
CGGAGTATGTTCTTCGCCATGGGACGGTCATTCCGCCGTTGGAATAGCTT
CAGCCGCGTTGCTTATACAGAAGTCTGCATGGATTGATTCTGAGTGGGAC
ATAGTTTACGAAGGCTCCAGCGTCAACATCAGTCTAAATGACGTTCACAA
GAGTGAGATTGGCAATTCTGTTTTACCAGAGGCAGAAAGAAGACCTTTAG
CAAGCAAATGCAAAGTTCATGTCTTATCATGTTCAAAATGTGGAACGCTG
ACCGTTGGAAAGGATAATGGTACGTTTGACACCATTATTACGAATGCATC
AATTGTGGACGATCCCAATCACTGTCGCAAAACCAGCGATAAAAACTATT
GTCGCGGTGACTTGACTTACGATAGGGCAACTGGTCTCGCATTCTTTTTT
TGGTCAATTCGAGTCAAAGATGAGAATGGCGAACGGAGAATCGCGACAAA
GGGCATTGAGGTACTTTTGAACGATAGAGAGACCGAAAGGGTTCTTACTA
CCAACGAAACTATTTGGGAAATCATCCCCGATGATAGAAGGACGAGGGTG
TACTCTATTTCTTGTTCTTCAACGGGTTTACATTGGACAGATTTAACCAG
AGCTGTATCAATCTACAGGACAGTTCAAATGGAAAGCCCTGGTGAGAAGA
AAGCGAATGTTAACGGAAACATTAAAAACGTTCAGCCATTGACGAAGACT
GACGTCATCAAGTCTTTGTTTGCCCTCAAGGCGGAGGATAATGGCTCAAA
CTGCAATGGCTTAGTACCACAGTACACGCGTTGCGGCACTTTCGATATTT
CTAGAGCATCGATTCTTTTGGCTGTGAATTCTTTCGCTATGCTCATTTAC
ATAGGTCTCTTGCTGGCTGGACGCAAACAAAAGTATGTTACACTACCCAC
TAATGCCGCTGCGTGGAAGAGATATGCCATAGGAGTGCGAGAAGGAGGTG
GAGATTTCATTGTCACGACTGAAACTGAGAATCTGGAAAGCAGATTAATG
GTTGTCGATGTTGCCAAGCATATGTCAGTTTTTTTTTCATGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:1002453..1003844-

>Gvermi11566.t1 ID=Gvermi11566.t1|Name=Gvermi11566.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1392bp|location=Sequence derived from alignment at ScGOVlb_3404:1002453..1003844- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGTCTCTGCAGGTCATAAACGCCTTGCTGAATATTTGTCTCTGGTT
CGCAAATGCCTTTTTTGCCAAGTTGCTGGAAAGGGTATACATTCAAACCT
CCAGACTAGAATTTCAATTCACCGGAAAGACGTTTTCATTGGATTCTGGA
GAAGTAAGCATGCTCCTTGGACTAAAATCAGTGCTGAATGCTCTCTCTTG
TCACAAGATCAATCCCAACAGGAGCTATATTTCTTCATCATGGGTATCTT
TACTCATATTCCTTTCTCTCATTTCTCTACCGTCCGAAATATGGATCGAG
ACCGGAATTGACGAGATGAATAACTGCCGACCATCGGTCGCGAACAGTAC
CGGAGTATGTTCTTCGCCATGGGACGGTCATTCCGCCGTTGGAATAGCTT
CAGCCGCGTTGCTTATACAGAAGTCTGCATGGATTGATTCTGAGTGGGAC
ATAGTTTACGAAGGCTCCAGCGTCAACATCAGTCTAAATGACGTTCACAA
GAGTGAGATTGGCAATTCTGTTTTACCAGAGGCAGAAAGAAGACCTTTAG
CAAGCAAATGCAAAGTTCATGTCTTATCATGTTCAAAATGTGGAACGCTG
ACCGTTGGAAAGGATAATGGTACGTTTGACACCATTATTACGAATGCATC
AATTGTGGACGATCCCAATCACTGTCGCAAAACCAGCGATAAAAACTATT
GTCGCGGTGACTTGACTTACGATAGGGCAACTGGTCTCGCATTCTTTTTT
TGGTCAATTCGAGTCAAAGATGAGAATGGCGAACGGAGAATCGCGACAAA
GGGCATTGAGGTACTTTTGAACGATAGAGAGACCGAAAGGGTTCTTACTA
CCAACGAAACTATTTGGGAAATCATCCCCGATGATAGAAGGACGAGGGTG
TACTCTATTTCTTGTTCTTCAACGGGTTTACATTGGACAGATTTAACCAG
AGCTGTATCAATCTACAGGACAGTTCAAATGGAAAGCCCTGGTGAGAAGA
AAGCGAATGTTAACGGAAACATTAAAAACGTTCAGCCATTGACGAAGACT
GACGTCATCAAGTCTTTGTTTGCCCTCAAGGCGGAGGATAATGGCTCAAA
CTGCAATGGCTTAGTACCACAGTACACGCGTTGCGGCACTTTCGATATTT
CTAGAGCATCGATTCTTTTGGCTGTGAATTCTTTCGCTATGCTCATTTAC
ATAGGTCTCTTGCTGGCTGGACGCAAACAAAAGTATGTTACACTACCCAC
TAATGCCGCTGCGTGGAAGAGATATGCCATAGGAGTGCGAGAAGGAGGTG
GAGATTTCATTGTCACGACTGAAACTGAGAATCTGGAAAGCAGATTAATG
GTTGTCGATGTTGCCAAGCATATGTCAGTTTTTTTTTCATGA
back to top