Gvermi11561.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11561.t1
Unique NameGvermi11561.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length358
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:983671..984744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog946362.XP_004993154.1
Preferred nameNPY1
PFAMsNUDIX,NUDIX-like,zf-NADH-PPase
Max annot lvl33154|Opisthokonta
KEGG rclassRC00002
KEGG koko:K03426
KEGG ReactionR00103,R03004,R11104
KEGG Pathwayko00760,ko01100,ko04146,map00760,map01100,map04146
GOsGO:0000210,GO:0003674,GO:0003824,GO:0004551,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0019362,GO:0019637,GO:0019674,GO:0034641,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046496,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901360,GO:1901564
Evalue8.15e-59
EggNOG OGsCOG2816@1|root,KOG3084@2759|Eukaryota,39S81@33154|Opisthokonta
EC3.6.1.22
DescriptionNAD diphosphatase activity
COG categoryL
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11561Gvermi11561Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 983671..984744 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11561.t1.stop1Gvermi11561.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 983671..983673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11561.t1.CDS1Gvermi11561.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 983671..984744 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11561.t1.exon1Gvermi11561.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 983671..984744 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11561.t1.start1Gvermi11561.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 984742..984744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11561.t1Gvermi11561.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 983671..984744 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11561.t1 ID=Gvermi11561.t1|Name=Gvermi11561.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=358bp
MAPRLLVPELQPCVFGGPSLNRLNNCRRDPETSAKIWLPEARHIVFNSDL
KILIHFSPGSVSLALLPAGIRSQLPAAAEGPLLLGVDAENVPYVALRLPE
PDDERHVLIPPDARFVHLRAVFSRISSAHAAIAAHARSLFAFHQSHKFCG
QCGALTVADRAGARRRCERNILDVEPSENKQSSDKHCDGVWFPRTDPVVI
MLVVDPSGERVLLGRQRRYPPGLYSCLAGFMEHGEGVEDAVRREVNEESG
VQVGRVRFFASQPWPFPYSLMLGCVAQANSEKISVDLDELEHARWFSREE
VERMMVSNKSVAQPQTESMADNDLFVPPKAAIAGRLLEVFIMREPITFFD
PKGDAML*
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spliced messenger RNA

>Gvermi11561.t1 ID=Gvermi11561.t1|Name=Gvermi11561.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at ScGOVlb_3404:983671..984744- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACCGCGTTTACTAGTGCCGGAGTTACAGCCGTGCGTTTTCGGGGG
TCCCTCCCTGAATCGGCTTAATAACTGCCGCCGCGATCCAGAGACTTCTG
CCAAAATATGGCTCCCAGAAGCAAGGCATATTGTGTTTAACTCTGACTTA
AAAATCTTAATTCACTTCTCTCCAGGGTCTGTCTCTCTCGCTTTGCTCCC
TGCTGGTATTCGCAGTCAGCTCCCTGCCGCCGCCGAGGGGCCTCTATTGC
TAGGCGTTGATGCAGAAAACGTTCCATACGTCGCATTGCGATTACCAGAG
CCGGATGATGAGCGACATGTACTCATTCCGCCAGACGCACGATTTGTTCA
TTTGAGAGCAGTGTTCTCAAGGATTTCTTCTGCGCATGCAGCGATAGCCG
CACACGCTCGTTCTCTCTTCGCGTTTCATCAAAGTCATAAGTTTTGTGGC
CAGTGCGGGGCTCTGACAGTCGCAGATAGGGCTGGTGCTCGTCGCCGATG
CGAACGGAATATTCTTGACGTTGAACCGTCCGAAAACAAACAGAGCAGTG
ATAAACATTGTGACGGAGTATGGTTTCCTCGCACAGACCCGGTCGTCATC
ATGTTGGTAGTAGATCCATCTGGGGAACGAGTGTTACTGGGAAGACAGAG
AAGATACCCACCTGGACTGTACTCCTGCTTGGCTGGGTTCATGGAACATG
GAGAGGGAGTTGAAGACGCAGTTCGGAGGGAGGTAAACGAAGAATCTGGT
GTTCAAGTTGGGCGCGTTCGCTTCTTCGCATCACAGCCTTGGCCTTTTCC
GTACTCTCTCATGCTTGGATGTGTTGCCCAAGCAAACTCAGAAAAGATTT
CTGTTGATTTAGACGAGTTGGAGCACGCTCGATGGTTTTCACGGGAGGAA
GTGGAAAGAATGATGGTAAGCAACAAGTCAGTTGCACAGCCACAGACAGA
AAGCATGGCGGACAATGACTTGTTTGTACCGCCCAAGGCCGCAATTGCAG
GTAGATTACTGGAGGTGTTCATTATGCGGGAGCCCATCACATTTTTTGAT
CCGAAAGGAGACGCAATGCTGTGA
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protein sequence of Gvermi11561.t1

>Gvermi11561.t1 ID=Gvermi11561.t1|Name=Gvermi11561.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=358bp
MAPRLLVPELQPCVFGGPSLNRLNNCRRDPETSAKIWLPEARHIVFNSDL
KILIHFSPGSVSLALLPAGIRSQLPAAAEGPLLLGVDAENVPYVALRLPE
PDDERHVLIPPDARFVHLRAVFSRISSAHAAIAAHARSLFAFHQSHKFCG
QCGALTVADRAGARRRCERNILDVEPSENKQSSDKHCDGVWFPRTDPVVI
MLVVDPSGERVLLGRQRRYPPGLYSCLAGFMEHGEGVEDAVRREVNEESG
VQVGRVRFFASQPWPFPYSLMLGCVAQANSEKISVDLDELEHARWFSREE
VERMMVSNKSVAQPQTESMADNDLFVPPKAAIAGRLLEVFIMREPITFFD
PKGDAML*
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mRNA from alignment at ScGOVlb_3404:983671..984744-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11561.t1 ID=Gvermi11561.t1|Name=Gvermi11561.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at ScGOVlb_3404:983671..984744- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCACCGCGTTTACTAGTGCCGGAGTTACAGCCGTGCGTTTTCGGGGG
TCCCTCCCTGAATCGGCTTAATAACTGCCGCCGCGATCCAGAGACTTCTG
CCAAAATATGGCTCCCAGAAGCAAGGCATATTGTGTTTAACTCTGACTTA
AAAATCTTAATTCACTTCTCTCCAGGGTCTGTCTCTCTCGCTTTGCTCCC
TGCTGGTATTCGCAGTCAGCTCCCTGCCGCCGCCGAGGGGCCTCTATTGC
TAGGCGTTGATGCAGAAAACGTTCCATACGTCGCATTGCGATTACCAGAG
CCGGATGATGAGCGACATGTACTCATTCCGCCAGACGCACGATTTGTTCA
TTTGAGAGCAGTGTTCTCAAGGATTTCTTCTGCGCATGCAGCGATAGCCG
CACACGCTCGTTCTCTCTTCGCGTTTCATCAAAGTCATAAGTTTTGTGGC
CAGTGCGGGGCTCTGACAGTCGCAGATAGGGCTGGTGCTCGTCGCCGATG
CGAACGGAATATTCTTGACGTTGAACCGTCCGAAAACAAACAGAGCAGTG
ATAAACATTGTGACGGAGTATGGTTTCCTCGCACAGACCCGGTCGTCATC
ATGTTGGTAGTAGATCCATCTGGGGAACGAGTGTTACTGGGAAGACAGAG
AAGATACCCACCTGGACTGTACTCCTGCTTGGCTGGGTTCATGGAACATG
GAGAGGGAGTTGAAGACGCAGTTCGGAGGGAGGTAAACGAAGAATCTGGT
GTTCAAGTTGGGCGCGTTCGCTTCTTCGCATCACAGCCTTGGCCTTTTCC
GTACTCTCTCATGCTTGGATGTGTTGCCCAAGCAAACTCAGAAAAGATTT
CTGTTGATTTAGACGAGTTGGAGCACGCTCGATGGTTTTCACGGGAGGAA
GTGGAAAGAATGATGGTAAGCAACAAGTCAGTTGCACAGCCACAGACAGA
AAGCATGGCGGACAATGACTTGTTTGTACCGCCCAAGGCCGCAATTGCAG
GTAGATTACTGGAGGTGTTCATTATGCGGGAGCCCATCACATTTTTTGAT
CCGAAAGGAGACGCAATGCTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:983671..984744-

>Gvermi11561.t1 ID=Gvermi11561.t1|Name=Gvermi11561.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1074bp|location=Sequence derived from alignment at ScGOVlb_3404:983671..984744- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCACCGCGTTTACTAGTGCCGGAGTTACAGCCGTGCGTTTTCGGGGG
TCCCTCCCTGAATCGGCTTAATAACTGCCGCCGCGATCCAGAGACTTCTG
CCAAAATATGGCTCCCAGAAGCAAGGCATATTGTGTTTAACTCTGACTTA
AAAATCTTAATTCACTTCTCTCCAGGGTCTGTCTCTCTCGCTTTGCTCCC
TGCTGGTATTCGCAGTCAGCTCCCTGCCGCCGCCGAGGGGCCTCTATTGC
TAGGCGTTGATGCAGAAAACGTTCCATACGTCGCATTGCGATTACCAGAG
CCGGATGATGAGCGACATGTACTCATTCCGCCAGACGCACGATTTGTTCA
TTTGAGAGCAGTGTTCTCAAGGATTTCTTCTGCGCATGCAGCGATAGCCG
CACACGCTCGTTCTCTCTTCGCGTTTCATCAAAGTCATAAGTTTTGTGGC
CAGTGCGGGGCTCTGACAGTCGCAGATAGGGCTGGTGCTCGTCGCCGATG
CGAACGGAATATTCTTGACGTTGAACCGTCCGAAAACAAACAGAGCAGTG
ATAAACATTGTGACGGAGTATGGTTTCCTCGCACAGACCCGGTCGTCATC
ATGTTGGTAGTAGATCCATCTGGGGAACGAGTGTTACTGGGAAGACAGAG
AAGATACCCACCTGGACTGTACTCCTGCTTGGCTGGGTTCATGGAACATG
GAGAGGGAGTTGAAGACGCAGTTCGGAGGGAGGTAAACGAAGAATCTGGT
GTTCAAGTTGGGCGCGTTCGCTTCTTCGCATCACAGCCTTGGCCTTTTCC
GTACTCTCTCATGCTTGGATGTGTTGCCCAAGCAAACTCAGAAAAGATTT
CTGTTGATTTAGACGAGTTGGAGCACGCTCGATGGTTTTCACGGGAGGAA
GTGGAAAGAATGATGGTAAGCAACAAGTCAGTTGCACAGCCACAGACAGA
AAGCATGGCGGACAATGACTTGTTTGTACCGCCCAAGGCCGCAATTGCAG
GTAGATTACTGGAGGTGTTCATTATGCGGGAGCCCATCACATTTTTTGAT
CCGAAAGGAGACGCAATGCTGTGA
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