Gvermi11559.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11559.t1
Unique NameGvermi11559.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:979369..980339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog70448.A0A096P8C5
Max annot lvl2759|Eukaryota
Evalue3.94e-27
EggNOG OGs2D3F1@1|root,2SRBK@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11559Gvermi11559Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 979369..980339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11559.t1Gvermi11559.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 979369..980339 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11559.t1.start1Gvermi11559.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 979369..979371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11559.t1.CDS1Gvermi11559.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 979369..979912 +
Gvermi11559.t1.CDS2Gvermi11559.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 979990..980339 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11559.t1.exon1Gvermi11559.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 979369..979912 +
Gvermi11559.t1.exon2Gvermi11559.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 979990..980339 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11559.t1.intron1Gvermi11559.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 979913..979989 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11559.t1.stop1Gvermi11559.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 980337..980339 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11559.t1 ID=Gvermi11559.t1|Name=Gvermi11559.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=298bp
MDKPKWSYLTIPQVVAVALCILIAFSQREASSKHSFNSLLSEEAVHFDPL
AEEVYPVSEGGYEAFLDIYVRNANLDQPLLQSKDNALPEKEFRDLQGCLR
EHPMRFHNVNDDNTFNGTRGFLLSFTERGIPEMENSDMFGCLKDYFRRYR
LPNTNAWVLNMVWADIPDFKKELTIQRHTDDAIVLNYTGSKKIMPFQTNV
LYVFVPEKMEGGQLEAWDYDADLMMIMNGAQARVSPAENRMAFFRGDAQH
QVRSYNAPMNDKLRAGLVLEQYEVPAEYQQYVTDWHWRDHQDAGMMM*
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spliced messenger RNA

>Gvermi11559.t1 ID=Gvermi11559.t1|Name=Gvermi11559.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=894bp|location=Sequence derived from alignment at ScGOVlb_3404:979369..980339+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAAACCAAAGTGGTCATATCTTACTATCCCTCAAGTTGTTGCTGT
CGCCTTGTGCATCCTAATTGCTTTCTCGCAGAGAGAGGCATCTTCGAAAC
ACTCATTCAATTCATTATTATCTGAGGAAGCAGTTCATTTCGACCCCTTG
GCAGAAGAAGTATATCCCGTTTCCGAGGGGGGTTATGAAGCGTTTTTGGA
TATCTATGTACGAAATGCGAACCTGGACCAACCTCTTTTGCAATCAAAGG
ACAATGCACTGCCTGAAAAAGAATTTCGTGACTTGCAGGGTTGTCTACGG
GAGCATCCGATGCGATTTCACAACGTGAATGACGACAATACATTCAATGG
CACTCGAGGCTTTCTGCTCAGCTTCACAGAAAGGGGAATACCGGAAATGG
AAAATTCCGACATGTTTGGGTGTCTAAAAGACTATTTCAGAAGATACCGA
CTGCCAAATACAAATGCCTGGGTGCTGAACATGGTCTGGGCAGATATTCC
AGACTTCAAGAAAGAATTAACAATTCAACGACACACAGACGATGCAATAG
TGCTTAACTACACTGGATCGAAGAAAATCATGCCATTTCAGACGAACGTA
CTATATGTTTTCGTACCTGAGAAAATGGAAGGGGGTCAACTAGAAGCATG
GGACTACGATGCGGATCTAATGATGATTATGAACGGAGCTCAAGCCAGAG
TGTCACCGGCGGAAAATCGAATGGCCTTTTTCAGAGGAGACGCTCAACAT
CAAGTTCGGAGCTACAATGCGCCAATGAATGACAAACTGCGTGCAGGTTT
GGTACTAGAACAATACGAAGTCCCTGCAGAATACCAGCAGTATGTCACAG
ATTGGCATTGGAGGGACCATCAAGATGCTGGTATGATGATGTAG
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protein sequence of Gvermi11559.t1

>Gvermi11559.t1 ID=Gvermi11559.t1|Name=Gvermi11559.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=298bp
MDKPKWSYLTIPQVVAVALCILIAFSQREASSKHSFNSLLSEEAVHFDPL
AEEVYPVSEGGYEAFLDIYVRNANLDQPLLQSKDNALPEKEFRDLQGCLR
EHPMRFHNVNDDNTFNGTRGFLLSFTERGIPEMENSDMFGCLKDYFRRYR
LPNTNAWVLNMVWADIPDFKKELTIQRHTDDAIVLNYTGSKKIMPFQTNV
LYVFVPEKMEGGQLEAWDYDADLMMIMNGAQARVSPAENRMAFFRGDAQH
QVRSYNAPMNDKLRAGLVLEQYEVPAEYQQYVTDWHWRDHQDAGMMM*
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mRNA from alignment at ScGOVlb_3404:979369..980339+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11559.t1 ID=Gvermi11559.t1|Name=Gvermi11559.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=971bp|location=Sequence derived from alignment at ScGOVlb_3404:979369..980339+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACAAACCAAAGTGGTCATATCTTACTATCCCTCAAGTTGTTGCTGT
CGCCTTGTGCATCCTAATTGCTTTCTCGCAGAGAGAGGCATCTTCGAAAC
ACTCATTCAATTCATTATTATCTGAGGAAGCAGTTCATTTCGACCCCTTG
GCAGAAGAAGTATATCCCGTTTCCGAGGGGGGTTATGAAGCGTTTTTGGA
TATCTATGTACGAAATGCGAACCTGGACCAACCTCTTTTGCAATCAAAGG
ACAATGCACTGCCTGAAAAAGAATTTCGTGACTTGCAGGGTTGTCTACGG
GAGCATCCGATGCGATTTCACAACGTGAATGACGACAATACATTCAATGG
CACTCGAGGCTTTCTGCTCAGCTTCACAGAAAGGGGAATACCGGAAATGG
AAAATTCCGACATGTTTGGGTGTCTAAAAGACTATTTCAGAAGATACCGA
CTGCCAAATACAAATGCCTGGGTGCTGAACATGGTCTGGGCAGATATTCC
AGACTTCAAGAAAGAATTAACAATTCAACGACACACAGACGATGGTATGT
TTTTACAAGCGTTCGACTCACCCTTACGTTTTTTCATTATGATAACATTT
CTAACTGTTTTAACCTCTCAGCAATAGTGCTTAACTACACTGGATCGAAG
AAAATCATGCCATTTCAGACGAACGTACTATATGTTTTCGTACCTGAGAA
AATGGAAGGGGGTCAACTAGAAGCATGGGACTACGATGCGGATCTAATGA
TGATTATGAACGGAGCTCAAGCCAGAGTGTCACCGGCGGAAAATCGAATG
GCCTTTTTCAGAGGAGACGCTCAACATCAAGTTCGGAGCTACAATGCGCC
AATGAATGACAAACTGCGTGCAGGTTTGGTACTAGAACAATACGAAGTCC
CTGCAGAATACCAGCAGTATGTCACAGATTGGCATTGGAGGGACCATCAA
GATGCTGGTATGATGATGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:979369..980339+

>Gvermi11559.t1 ID=Gvermi11559.t1|Name=Gvermi11559.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=894bp|location=Sequence derived from alignment at ScGOVlb_3404:979369..980339+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACAAACCAAAGTGGTCATATCTTACTATCCCTCAAGTTGTTGCTGT
CGCCTTGTGCATCCTAATTGCTTTCTCGCAGAGAGAGGCATCTTCGAAAC
ACTCATTCAATTCATTATTATCTGAGGAAGCAGTTCATTTCGACCCCTTG
GCAGAAGAAGTATATCCCGTTTCCGAGGGGGGTTATGAAGCGTTTTTGGA
TATCTATGTACGAAATGCGAACCTGGACCAACCTCTTTTGCAATCAAAGG
ACAATGCACTGCCTGAAAAAGAATTTCGTGACTTGCAGGGTTGTCTACGG
GAGCATCCGATGCGATTTCACAACGTGAATGACGACAATACATTCAATGG
CACTCGAGGCTTTCTGCTCAGCTTCACAGAAAGGGGAATACCGGAAATGG
AAAATTCCGACATGTTTGGGTGTCTAAAAGACTATTTCAGAAGATACCGA
CTGCCAAATACAAATGCCTGGGTGCTGAACATGGTCTGGGCAGATATTCC
AGACTTCAAGAAAGAATTAACAATTCAACGACACACAGACGATGCAATAG
TGCTTAACTACACTGGATCGAAGAAAATCATGCCATTTCAGACGAACGTA
CTATATGTTTTCGTACCTGAGAAAATGGAAGGGGGTCAACTAGAAGCATG
GGACTACGATGCGGATCTAATGATGATTATGAACGGAGCTCAAGCCAGAG
TGTCACCGGCGGAAAATCGAATGGCCTTTTTCAGAGGAGACGCTCAACAT
CAAGTTCGGAGCTACAATGCGCCAATGAATGACAAACTGCGTGCAGGTTT
GGTACTAGAACAATACGAAGTCCCTGCAGAATACCAGCAGTATGTCACAG
ATTGGCATTGGAGGGACCATCAAGATGCTGGTATGATGATGTAG
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