Gvermi11553.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11553.t1
Unique Name	Gvermi11553.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	301

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:907952..908854 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5932.XP_004035810.1
PFAMs	Pkinase
Max annot lvl	5878\|Ciliophora
KEGG ko	ko:K02218
KEGG Pathway	ko04011,ko04392,map04011,map04392
Evalue	3e-57
EggNOG OGs	KOG1164@1\|root,KOG1164@2759\|Eukaryota,3ZD6E@5878\|Ciliophora
EC	2.7.11.1
Description	Protein tyrosine kinase
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11553	Gvermi11553	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 907952..908854 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11553.t1.start1	Gvermi11553.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 907952..907954 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11553.t1.CDS1	Gvermi11553.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 907952..908854 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11553.t1.exon1	Gvermi11553.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 907952..908854 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11553.t1.stop1	Gvermi11553.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 908852..908854 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11553.t1	Gvermi11553.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 907952..908854 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:907952..908854+
coding sequence from alignment at ScGOVlb_3404:907952..908854+

mRNA sequence

>Gvermi11553.t1 ID=Gvermi11553.t1|Name=Gvermi11553.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=301bp
MSLTSLCGTILNGKYRLNEYLGYGAYGDVYGAIDRETNEMYALKVEKKSE
RSSSLKYEHTVYRKLHLFEELKGVPKIYHFQETQQFRALVMDRLGRDLDF
RRDVKKPQTFQILQIGFQVIDNIQRIHSKGVLHLDLKPDNLMFGYRSDEV
SSLYIVDFGMAELMTDWRTGKHRECKKEPHVCGSLTFSSINTHNQVTRSR
KDDLESIGYSLIYFFRGSLPWDFITGSDHTIYYIDSKEAKPFVDKNKILF
DQIGKMKKEISVETLCKGLPDAMAKYFTYVRNLTFSETPNYDFLKSLFVR
*

spliced messenger RNA

>Gvermi11553.t1 ID=Gvermi11553.t1|Name=Gvermi11553.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=903bp|location=Sequence derived from alignment at ScGOVlb_3404:907952..908854+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCTTACAAGCCTGTGTGGAACCATTCTAAATGGTAAATATCGTTT
AAATGAATACCTAGGATATGGAGCTTATGGAGATGTCTACGGTGCAATAG
ATCGCGAAACAAATGAAATGTACGCCTTGAAGGTAGAAAAAAAAAGTGAA
AGAAGTTCATCCCTAAAATATGAACACACGGTTTATAGAAAATTGCATCT
ATTTGAAGAATTGAAAGGAGTTCCGAAAATTTATCATTTCCAGGAAACTC
AGCAATTCAGAGCTCTGGTGATGGACAGACTAGGCAGAGACCTTGACTTT
AGAAGAGATGTTAAGAAACCGCAAACTTTTCAGATATTACAGATAGGTTT
TCAAGTTATTGACAATATTCAGAGAATACATTCCAAGGGTGTTCTGCATT
TGGACCTCAAACCTGACAATCTCATGTTTGGTTATCGTAGTGATGAGGTT
TCTTCTCTTTATATTGTCGATTTTGGAATGGCAGAATTGATGACGGATTG
GAGAACAGGAAAACACAGAGAATGTAAGAAAGAACCGCACGTCTGTGGAT
CTCTTACGTTCTCATCTATCAACACCCATAATCAAGTAACTCGATCAAGA
AAAGATGACTTGGAGAGTATTGGGTATTCGCTCATATACTTCTTTCGAGG
GTCACTGCCATGGGACTTTATTACGGGTTCAGATCATACCATTTACTACA
TTGATTCAAAAGAAGCTAAGCCATTCGTCGACAAGAATAAGATTTTGTTT
GATCAAATCGGAAAGATGAAGAAAGAAATATCAGTGGAAACTCTTTGCAA
GGGTTTACCTGATGCGATGGCTAAATATTTTACATATGTGAGGAATCTTA
CATTTTCGGAAACACCTAACTATGATTTTCTGAAATCTTTGTTTGTCAGA
TAA

protein sequence of Gvermi11553.t1

>Gvermi11553.t1 ID=Gvermi11553.t1|Name=Gvermi11553.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=301bp
MSLTSLCGTILNGKYRLNEYLGYGAYGDVYGAIDRETNEMYALKVEKKSE
RSSSLKYEHTVYRKLHLFEELKGVPKIYHFQETQQFRALVMDRLGRDLDF
RRDVKKPQTFQILQIGFQVIDNIQRIHSKGVLHLDLKPDNLMFGYRSDEV
SSLYIVDFGMAELMTDWRTGKHRECKKEPHVCGSLTFSSINTHNQVTRSR
KDDLESIGYSLIYFFRGSLPWDFITGSDHTIYYIDSKEAKPFVDKNKILF
DQIGKMKKEISVETLCKGLPDAMAKYFTYVRNLTFSETPNYDFLKSLFVR
*

mRNA from alignment at ScGOVlb_3404:907952..908854+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11553.t1 ID=Gvermi11553.t1|Name=Gvermi11553.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=903bp|location=Sequence derived from alignment at ScGOVlb_3404:907952..908854+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCCTTACAAGCCTGTGTGGAACCATTCTAAATGGTAAATATCGTTT
AAATGAATACCTAGGATATGGAGCTTATGGAGATGTCTACGGTGCAATAG
ATCGCGAAACAAATGAAATGTACGCCTTGAAGGTAGAAAAAAAAAGTGAA
AGAAGTTCATCCCTAAAATATGAACACACGGTTTATAGAAAATTGCATCT
ATTTGAAGAATTGAAAGGAGTTCCGAAAATTTATCATTTCCAGGAAACTC
AGCAATTCAGAGCTCTGGTGATGGACAGACTAGGCAGAGACCTTGACTTT
AGAAGAGATGTTAAGAAACCGCAAACTTTTCAGATATTACAGATAGGTTT
TCAAGTTATTGACAATATTCAGAGAATACATTCCAAGGGTGTTCTGCATT
TGGACCTCAAACCTGACAATCTCATGTTTGGTTATCGTAGTGATGAGGTT
TCTTCTCTTTATATTGTCGATTTTGGAATGGCAGAATTGATGACGGATTG
GAGAACAGGAAAACACAGAGAATGTAAGAAAGAACCGCACGTCTGTGGAT
CTCTTACGTTCTCATCTATCAACACCCATAATCAAGTAACTCGATCAAGA
AAAGATGACTTGGAGAGTATTGGGTATTCGCTCATATACTTCTTTCGAGG
GTCACTGCCATGGGACTTTATTACGGGTTCAGATCATACCATTTACTACA
TTGATTCAAAAGAAGCTAAGCCATTCGTCGACAAGAATAAGATTTTGTTT
GATCAAATCGGAAAGATGAAGAAAGAAATATCAGTGGAAACTCTTTGCAA
GGGTTTACCTGATGCGATGGCTAAATATTTTACATATGTGAGGAATCTTA
CATTTTCGGAAACACCTAACTATGATTTTCTGAAATCTTTGTTTGTCAGA
TAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:907952..908854+

>Gvermi11553.t1 ID=Gvermi11553.t1|Name=Gvermi11553.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=903bp|location=Sequence derived from alignment at ScGOVlb_3404:907952..908854+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCCTTACAAGCCTGTGTGGAACCATTCTAAATGGTAAATATCGTTT
AAATGAATACCTAGGATATGGAGCTTATGGAGATGTCTACGGTGCAATAG
ATCGCGAAACAAATGAAATGTACGCCTTGAAGGTAGAAAAAAAAAGTGAA
AGAAGTTCATCCCTAAAATATGAACACACGGTTTATAGAAAATTGCATCT
ATTTGAAGAATTGAAAGGAGTTCCGAAAATTTATCATTTCCAGGAAACTC
AGCAATTCAGAGCTCTGGTGATGGACAGACTAGGCAGAGACCTTGACTTT
AGAAGAGATGTTAAGAAACCGCAAACTTTTCAGATATTACAGATAGGTTT
TCAAGTTATTGACAATATTCAGAGAATACATTCCAAGGGTGTTCTGCATT
TGGACCTCAAACCTGACAATCTCATGTTTGGTTATCGTAGTGATGAGGTT
TCTTCTCTTTATATTGTCGATTTTGGAATGGCAGAATTGATGACGGATTG
GAGAACAGGAAAACACAGAGAATGTAAGAAAGAACCGCACGTCTGTGGAT
CTCTTACGTTCTCATCTATCAACACCCATAATCAAGTAACTCGATCAAGA
AAAGATGACTTGGAGAGTATTGGGTATTCGCTCATATACTTCTTTCGAGG
GTCACTGCCATGGGACTTTATTACGGGTTCAGATCATACCATTTACTACA
TTGATTCAAAAGAAGCTAAGCCATTCGTCGACAAGAATAAGATTTTGTTT
GATCAAATCGGAAAGATGAAGAAAGAAATATCAGTGGAAACTCTTTGCAA
GGGTTTACCTGATGCGATGGCTAAATATTTTACATATGTGAGGAATCTTA
CATTTTCGGAAACACCTAACTATGATTTTCTGAAATCTTTGTTTGTCAGA
TAA