Gvermi11540.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11540.t1
Unique NameGvermi11540.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length372
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:770104..771291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705251.1
PFAMsHSP33
Max annot lvl2759|Eukaryota
KEGG koko:K04083
Evalue6.31e-97
EggNOG OGsCOG1281@1|root,2QRJN@2759|Eukaryota
DescriptionHsp33 protein
COG categoryO
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11540Gvermi11540Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 770104..771291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11540.t1Gvermi11540.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 770104..771291 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11540.t1.start1Gvermi11540.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 770104..770106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11540.t1.CDS1Gvermi11540.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 770104..771136 +
Gvermi11540.t1.CDS2Gvermi11540.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 771209..771291 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11540.t1.exon1Gvermi11540.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 770104..771136 +
Gvermi11540.t1.exon2Gvermi11540.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 771209..771291 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11540.t1.intron1Gvermi11540.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 771137..771208 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11540.t1.stop1Gvermi11540.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 771289..771291 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11540.t1 ID=Gvermi11540.t1|Name=Gvermi11540.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=372bp
MTAARAAAFVGAPLSPGCFAPPAADALRPRRCARHCRQRPRPPRPALRPA
CHAAGSSRPPAHPDDPLPFEKLFLKGPVPGDTLVRTISANGEVSCSVVAC
TGLVSGATRLHRTSPVVSTAFGRALSCALLMSSGKKDGETLQVEFRGSGP
IQGITAISNGLGHVRGYVGDPNVQLPLNKGTLDVPAAIGQGIVAVVRDNV
YSKQPYTGIVQITAGQVAEDLAMYLLESEQTPSALGAGVYLSAQGTVTAA
GGYLMQMLPGASPQSAEIVETNVRTLGTPTQIIRAGMTPGQIVDKLMAGL
SPMKLASSSPRYYCHCGVERVKRTVALIPEIEVRQLLLEYGKIEATCEFC
GQTYSLARQEVEEILAAEKES*
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spliced messenger RNA

>Gvermi11540.t1 ID=Gvermi11540.t1|Name=Gvermi11540.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1116bp|location=Sequence derived from alignment at ScGOVlb_3404:770104..771291+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCTGCGCGAGCCGCCGCGTTCGTGGGCGCGCCGCTCTCGCCGGG
CTGCTTCGCGCCGCCGGCCGCCGACGCGCTGCGCCCGCGCCGCTGCGCGC
GGCACTGCAGGCAGCGCCCCCGCCCGCCGCGTCCCGCGCTGCGCCCTGCA
TGCCATGCGGCCGGCTCCTCGCGGCCGCCGGCGCACCCCGACGACCCTCT
CCCCTTCGAGAAGCTCTTCCTCAAGGGCCCTGTGCCCGGAGACACCCTGG
TGCGCACCATCAGCGCCAATGGCGAGGTGTCGTGCAGCGTCGTGGCGTGC
ACGGGCCTCGTGAGCGGCGCCACGCGCTTGCATCGCACCAGCCCCGTCGT
CTCCACCGCCTTCGGCCGCGCGCTGTCGTGCGCCCTGCTCATGAGCAGCG
GCAAGAAGGACGGCGAGACGCTGCAAGTCGAGTTTCGAGGCTCGGGGCCT
ATCCAGGGCATCACCGCCATCTCGAACGGCCTGGGCCATGTCAGAGGTTA
TGTGGGCGACCCCAACGTGCAGCTCCCTCTCAACAAAGGTACCCTCGACG
TGCCGGCGGCTATCGGTCAGGGAATTGTTGCCGTCGTCAGGGATAACGTG
TACAGCAAACAGCCGTACACCGGCATCGTGCAGATTACCGCCGGTCAGGT
CGCGGAAGATCTTGCCATGTACTTGCTCGAGTCGGAGCAGACCCCTTCTG
CACTGGGCGCTGGTGTGTACCTCTCAGCGCAGGGCACTGTGACAGCAGCC
GGCGGCTATTTGATGCAAATGCTGCCCGGTGCTTCACCCCAAAGCGCAGA
GATTGTGGAAACAAACGTCAGGACGCTCGGAACCCCGACGCAGATCATTA
GAGCCGGCATGACTCCGGGACAAATAGTCGATAAGCTCATGGCAGGTCTT
TCGCCCATGAAGCTTGCATCTTCGTCACCGCGCTACTATTGCCATTGCGG
CGTAGAACGTGTCAAACGGACAGTTGCGCTCATACCAGAAATTGAAGTTC
GGCAGTTACTGTTGGAGTATGGCAAAATTGAAGCAACATGCGAGTTTTGC
GGACAGACCTACTCCTTAGCTCGTCAGGAAGTAGAAGAAATTCTTGCCGC
TGAGAAAGAGTCCTGA
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protein sequence of Gvermi11540.t1

>Gvermi11540.t1 ID=Gvermi11540.t1|Name=Gvermi11540.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=372bp
MTAARAAAFVGAPLSPGCFAPPAADALRPRRCARHCRQRPRPPRPALRPA
CHAAGSSRPPAHPDDPLPFEKLFLKGPVPGDTLVRTISANGEVSCSVVAC
TGLVSGATRLHRTSPVVSTAFGRALSCALLMSSGKKDGETLQVEFRGSGP
IQGITAISNGLGHVRGYVGDPNVQLPLNKGTLDVPAAIGQGIVAVVRDNV
YSKQPYTGIVQITAGQVAEDLAMYLLESEQTPSALGAGVYLSAQGTVTAA
GGYLMQMLPGASPQSAEIVETNVRTLGTPTQIIRAGMTPGQIVDKLMAGL
SPMKLASSSPRYYCHCGVERVKRTVALIPEIEVRQLLLEYGKIEATCEFC
GQTYSLARQEVEEILAAEKES*
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mRNA from alignment at ScGOVlb_3404:770104..771291+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11540.t1 ID=Gvermi11540.t1|Name=Gvermi11540.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at ScGOVlb_3404:770104..771291+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAGCTGCGCGAGCCGCCGCGTTCGTGGGCGCGCCGCTCTCGCCGGG
CTGCTTCGCGCCGCCGGCCGCCGACGCGCTGCGCCCGCGCCGCTGCGCGC
GGCACTGCAGGCAGCGCCCCCGCCCGCCGCGTCCCGCGCTGCGCCCTGCA
TGCCATGCGGCCGGCTCCTCGCGGCCGCCGGCGCACCCCGACGACCCTCT
CCCCTTCGAGAAGCTCTTCCTCAAGGGCCCTGTGCCCGGAGACACCCTGG
TGCGCACCATCAGCGCCAATGGCGAGGTGTCGTGCAGCGTCGTGGCGTGC
ACGGGCCTCGTGAGCGGCGCCACGCGCTTGCATCGCACCAGCCCCGTCGT
CTCCACCGCCTTCGGCCGCGCGCTGTCGTGCGCCCTGCTCATGAGCAGCG
GCAAGAAGGACGGCGAGACGCTGCAAGTCGAGTTTCGAGGCTCGGGGCCT
ATCCAGGGCATCACCGCCATCTCGAACGGCCTGGGCCATGTCAGAGGTTA
TGTGGGCGACCCCAACGTGCAGCTCCCTCTCAACAAAGGTACCCTCGACG
TGCCGGCGGCTATCGGTCAGGGAATTGTTGCCGTCGTCAGGGATAACGTG
TACAGCAAACAGCCGTACACCGGCATCGTGCAGATTACCGCCGGTCAGGT
CGCGGAAGATCTTGCCATGTACTTGCTCGAGTCGGAGCAGACCCCTTCTG
CACTGGGCGCTGGTGTGTACCTCTCAGCGCAGGGCACTGTGACAGCAGCC
GGCGGCTATTTGATGCAAATGCTGCCCGGTGCTTCACCCCAAAGCGCAGA
GATTGTGGAAACAAACGTCAGGACGCTCGGAACCCCGACGCAGATCATTA
GAGCCGGCATGACTCCGGGACAAATAGTCGATAAGCTCATGGCAGGTCTT
TCGCCCATGAAGCTTGCATCTTCGTCACCGCGCTACTATTGCCATTGCGG
CGTAGAACGTGTCAAACGGACAGTTGCGCTCATACCAGAAATTGAAGTTC
GGCAGTTACTGTTGGAGTATGGCAAAATTGAAGGTACGTCATTTTGCTCT
CATCGTGTACTCCGGGTCAACTTTCTCACCTACTTTTTCTCGTTCTCTAC
TGAAGCAACATGCGAGTTTTGCGGACAGACCTACTCCTTAGCTCGTCAGG
AAGTAGAAGAAATTCTTGCCGCTGAGAAAGAGTCCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:770104..771291+

>Gvermi11540.t1 ID=Gvermi11540.t1|Name=Gvermi11540.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1116bp|location=Sequence derived from alignment at ScGOVlb_3404:770104..771291+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAGCTGCGCGAGCCGCCGCGTTCGTGGGCGCGCCGCTCTCGCCGGG
CTGCTTCGCGCCGCCGGCCGCCGACGCGCTGCGCCCGCGCCGCTGCGCGC
GGCACTGCAGGCAGCGCCCCCGCCCGCCGCGTCCCGCGCTGCGCCCTGCA
TGCCATGCGGCCGGCTCCTCGCGGCCGCCGGCGCACCCCGACGACCCTCT
CCCCTTCGAGAAGCTCTTCCTCAAGGGCCCTGTGCCCGGAGACACCCTGG
TGCGCACCATCAGCGCCAATGGCGAGGTGTCGTGCAGCGTCGTGGCGTGC
ACGGGCCTCGTGAGCGGCGCCACGCGCTTGCATCGCACCAGCCCCGTCGT
CTCCACCGCCTTCGGCCGCGCGCTGTCGTGCGCCCTGCTCATGAGCAGCG
GCAAGAAGGACGGCGAGACGCTGCAAGTCGAGTTTCGAGGCTCGGGGCCT
ATCCAGGGCATCACCGCCATCTCGAACGGCCTGGGCCATGTCAGAGGTTA
TGTGGGCGACCCCAACGTGCAGCTCCCTCTCAACAAAGGTACCCTCGACG
TGCCGGCGGCTATCGGTCAGGGAATTGTTGCCGTCGTCAGGGATAACGTG
TACAGCAAACAGCCGTACACCGGCATCGTGCAGATTACCGCCGGTCAGGT
CGCGGAAGATCTTGCCATGTACTTGCTCGAGTCGGAGCAGACCCCTTCTG
CACTGGGCGCTGGTGTGTACCTCTCAGCGCAGGGCACTGTGACAGCAGCC
GGCGGCTATTTGATGCAAATGCTGCCCGGTGCTTCACCCCAAAGCGCAGA
GATTGTGGAAACAAACGTCAGGACGCTCGGAACCCCGACGCAGATCATTA
GAGCCGGCATGACTCCGGGACAAATAGTCGATAAGCTCATGGCAGGTCTT
TCGCCCATGAAGCTTGCATCTTCGTCACCGCGCTACTATTGCCATTGCGG
CGTAGAACGTGTCAAACGGACAGTTGCGCTCATACCAGAAATTGAAGTTC
GGCAGTTACTGTTGGAGTATGGCAAAATTGAAGCAACATGCGAGTTTTGC
GGACAGACCTACTCCTTAGCTCGTCAGGAAGTAGAAGAAATTCTTGCCGC
TGAGAAAGAGTCCTGA
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