Gvermi11537.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11537.t1
Unique Name	Gvermi11537.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	398

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:762309..763502 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	36630.CADNFIAP00007710
Preferred name	DCD1
PFAMs	dCMP_cyt_deam_1
Max annot lvl	4751\|Fungi
KEGG rclass	RC00074
KEGG ko	ko:K01493
KEGG Reaction	R01663
KEGG Pathway	ko00240,ko01100,map00240,map01100
KEGG Module	M00429
GOs	GO:0003674,GO:0003824,GO:0004132,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006231,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009157,GO:0009162,GO:0009165,GO:0009176,GO:0009177,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016787,GO:0016810,GO:0016814,GO:0018130,GO:0019239,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046073,GO:0046078,GO:0046385,GO:0046483,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue	4.27e-56
EggNOG OGs	COG2131@1\|root,KOG3127@2759\|Eukaryota,38HPY@33154\|Opisthokonta,3NVNV@4751\|Fungi,3QQ80@4890\|Ascomycota,20CHB@147545\|Eurotiomycetes,3S8A6@5042\|Eurotiales
EC	3.5.4.12
Description	Deoxycytidylate deaminase
COG category	F
BRITE	ko00000,ko00001,ko00002,ko01000,ko02044

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11537	Gvermi11537	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 762309..763502 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11537.t1.start1	Gvermi11537.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 762309..762311 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11537.t1.CDS1	Gvermi11537.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 762309..763502 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11537.t1.exon1	Gvermi11537.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 762309..763502 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11537.t1.stop1	Gvermi11537.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 763500..763502 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11537.t1	Gvermi11537.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 762309..763502 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:762309..763502+
coding sequence from alignment at ScGOVlb_3404:762309..763502+

mRNA sequence

>Gvermi11537.t1 ID=Gvermi11537.t1|Name=Gvermi11537.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=398bp
MLICVCGPPRAGKHSVARYLVEALGARQLRAADLAPAQPALAACWREDAV
AVLVADPLRCAALPRLLARPWVLIVFVDAPLLVRFARARPPTAHPAPPPA
LSDFVREEQRRANVQPAAHYELCAAAAAADADADAAADAADADAADADAA
DADAADADAADADAADVDADAADADAANADADAADAANADATAGAADASA
AETAPAAVDLRLLERRAHIRIFNDFAGEQQLRRALATLHFTDARRLRPTW
DAYFMSLARLAAQRANCMKRRVGCVIARDRRVVATGYNGTPAGVRNCFQG
GCPRCNRLSPRAVALHLCLCLHAEENAIIEAGRQRCHGSTLYSTVFPCIL
CAKKIVQAGVARVVFDAHYATDDASEGLLRAGRVAVHPMRPDRAHVA*

spliced messenger RNA

>Gvermi11537.t1 ID=Gvermi11537.t1|Name=Gvermi11537.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at ScGOVlb_3404:762309..763502+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcttatctgcgtgtgcggcccgccgcgcgcgggcaagcactccgtcgc
gcgctacctcgtcgaggcgctgggcgcgcgccagctgcgcgccgccgacc
tcgcgcccgcccagcccgcgctggccgcgtgctggcgcgaggacgccgtc
gccgtgctcgtcgccgacccgctgcgctgcgccgcgctgccgcgcctgct
cgcgcgcccgtgggtgctcatcgtcttcgtcgacgccccgctgctggtgc
gctttgcgcgcgcgcgcccccccaccgcccaccccgctccgccgccggcg
ctcagcgactttgtgcgcgaggagcagcgccgcgccaacgtgcagcccgc
cgcgcactacgagctgtgcgccgccgccgccgccgccgacgccgacgccg
acgccgccgccgacgccgccgatgccgacgccgccgatgccgacgccgcc
gatgccgacgccgccgatgccgacgccgccgatgccgacgccgccgatgt
cgatgccgacgccgctgacgccgacgctgccaacgccgatgccgacgccg
ccgacgccgccaacgctgacgccaccgctggcgccgccgatgcctccgcc
gccgaaacagcgcccgccgccgtcgacctgcggctgctggagcggcgcgc
gcacatccgcatcttcaacgactttgcgggcgagcagcagctgcgccgcg
cgctggccacgctgcacttcaccgacgcgcgccgcctgcgcccgacgtgg
gacgcgtacttcatgtcgctggcgcggctggccgcgcagcgcgccaactg
catgaagcggcgcgtgggctgcgtcattgcgcgcgaccggcgcgtggtgg
ccaccggctacaacggcacgccggccggcgtgcgcaactgcttccagggc
ggctgcccgcgctgcaaccgcctgtcgccgcgcgccgtcgcgctgcacct
gtgcctgtgcctgcacgccgaggagaacgccatcatcgaggccggccgcc
agcgctgccacggcagcacgctctactccaccgtcttcccgtgcattctg
tgcgccaagaagatcgtgcaggccggcgtggcgcgcgtcgtcttcgacgc
ccactacgccaccgacgacgcgtcggagggcctgctgcgcgcggggcgcg
tcgccgtgcaccccatgcgccccgaccgcgcgcacgtcgcgTAA

protein sequence of Gvermi11537.t1

>Gvermi11537.t1 ID=Gvermi11537.t1|Name=Gvermi11537.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=398bp
MLICVCGPPRAGKHSVARYLVEALGARQLRAADLAPAQPALAACWREDAV
AVLVADPLRCAALPRLLARPWVLIVFVDAPLLVRFARARPPTAHPAPPPA
LSDFVREEQRRANVQPAAHYELCAAAAAADADADAAADAADADAADADAA
DADAADADAADADAADVDADAADADAANADADAADAANADATAGAADASA
AETAPAAVDLRLLERRAHIRIFNDFAGEQQLRRALATLHFTDARRLRPTW
DAYFMSLARLAAQRANCMKRRVGCVIARDRRVVATGYNGTPAGVRNCFQG
GCPRCNRLSPRAVALHLCLCLHAEENAIIEAGRQRCHGSTLYSTVFPCIL
CAKKIVQAGVARVVFDAHYATDDASEGLLRAGRVAVHPMRPDRAHVA*

mRNA from alignment at ScGOVlb_3404:762309..763502+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11537.t1 ID=Gvermi11537.t1|Name=Gvermi11537.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1194bp|location=Sequence derived from alignment at ScGOVlb_3404:762309..763502+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcttatctgcgtgtgcggcccgccgcgcgcgggcaagcactccgtcgc
gcgctacctcgtcgaggcgctgggcgcgcgccagctgcgcgccgccgacc
tcgcgcccgcccagcccgcgctggccgcgtgctggcgcgaggacgccgtc
gccgtgctcgtcgccgacccgctgcgctgcgccgcgctgccgcgcctgct
cgcgcgcccgtgggtgctcatcgtcttcgtcgacgccccgctgctggtgc
gctttgcgcgcgcgcgcccccccaccgcccaccccgctccgccgccggcg
ctcagcgactttgtgcgcgaggagcagcgccgcgccaacgtgcagcccgc
cgcgcactacgagctgtgcgccgccgccgccgccgccgacgccgacgccg
acgccgccgccgacgccgccgatgccgacgccgccgatgccgacgccgcc
gatgccgacgccgccgatgccgacgccgccgatgccgacgccgccgatgt
cgatgccgacgccgctgacgccgacgctgccaacgccgatgccgacgccg
ccgacgccgccaacgctgacgccaccgctggcgccgccgatgcctccgcc
gccgaaacagcgcccgccgccgtcgacctgcggctgctggagcggcgcgc
gcacatccgcatcttcaacgactttgcgggcgagcagcagctgcgccgcg
cgctggccacgctgcacttcaccgacgcgcgccgcctgcgcccgacgtgg
gacgcgtacttcatgtcgctggcgcggctggccgcgcagcgcgccaactg
catgaagcggcgcgtgggctgcgtcattgcgcgcgaccggcgcgtggtgg
ccaccggctacaacggcacgccggccggcgtgcgcaactgcttccagggc
ggctgcccgcgctgcaaccgcctgtcgccgcgcgccgtcgcgctgcacct
gtgcctgtgcctgcacgccgaggagaacgccatcatcgaggccggccgcc
agcgctgccacggcagcacgctctactccaccgtcttcccgtgcattctg
tgcgccaagaagatcgtgcaggccggcgtggcgcgcgtcgtcttcgacgc
ccactacgccaccgacgacgcgtcggagggcctgctgcgcgcggggcgcg
tcgccgtgcaccccatgcgccccgaccgcgcgcacgtcgcgTAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:762309..763502+

>Gvermi11537.t1 ID=Gvermi11537.t1|Name=Gvermi11537.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1194bp|location=Sequence derived from alignment at ScGOVlb_3404:762309..763502+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcttatctgcgtgtgcggcccgccgcgcgcgggcaagcactccgtcgc
gcgctacctcgtcgaggcgctgggcgcgcgccagctgcgcgccgccgacc
tcgcgcccgcccagcccgcgctggccgcgtgctggcgcgaggacgccgtc
gccgtgctcgtcgccgacccgctgcgctgcgccgcgctgccgcgcctgct
cgcgcgcccgtgggtgctcatcgtcttcgtcgacgccccgctgctggtgc
gctttgcgcgcgcgcgcccccccaccgcccaccccgctccgccgccggcg
ctcagcgactttgtgcgcgaggagcagcgccgcgccaacgtgcagcccgc
cgcgcactacgagctgtgcgccgccgccgccgccgccgacgccgacgccg
acgccgccgccgacgccgccgatgccgacgccgccgatgccgacgccgcc
gatgccgacgccgccgatgccgacgccgccgatgccgacgccgccgatgt
cgatgccgacgccgctgacgccgacgctgccaacgccgatgccgacgccg
ccgacgccgccaacgctgacgccaccgctggcgccgccgatgcctccgcc
gccgaaacagcgcccgccgccgtcgacctgcggctgctggagcggcgcgc
gcacatccgcatcttcaacgactttgcgggcgagcagcagctgcgccgcg
cgctggccacgctgcacttcaccgacgcgcgccgcctgcgcccgacgtgg
gacgcgtacttcatgtcgctggcgcggctggccgcgcagcgcgccaactg
catgaagcggcgcgtgggctgcgtcattgcgcgcgaccggcgcgtggtgg
ccaccggctacaacggcacgccggccggcgtgcgcaactgcttccagggc
ggctgcccgcgctgcaaccgcctgtcgccgcgcgccgtcgcgctgcacct
gtgcctgtgcctgcacgccgaggagaacgccatcatcgaggccggccgcc
agcgctgccacggcagcacgctctactccaccgtcttcccgtgcattctg
tgcgccaagaagatcgtgcaggccggcgtggcgcgcgtcgtcttcgacgc
ccactacgccaccgacgacgcgtcggagggcctgctgcgcgcggggcgcg
tcgccgtgcaccccatgcgccccgaccgcgcgcacgtcgcgTAA