Gvermi11526.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11526.t1
Unique Name	Gvermi11526.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	554

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:731963..733624 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX45364
PFAMs	Pkinase
Max annot lvl	2759\|Eukaryota
Evalue	3.56e-50
EggNOG OGs	KOG1989@1\|root,KOG1989@2759\|Eukaryota
Description	clathrin-coated pit assembly
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11526	Gvermi11526	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 731963..733624 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11526.t1.start1	Gvermi11526.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 731963..731965 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11526.t1.CDS1	Gvermi11526.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 731963..733624 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11526.t1.exon1	Gvermi11526.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 731963..733624 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11526.t1.stop1	Gvermi11526.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 733622..733624 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11526.t1	Gvermi11526.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 731963..733624 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:731963..733624+
coding sequence from alignment at ScGOVlb_3404:731963..733624+

mRNA sequence

>Gvermi11526.t1 ID=Gvermi11526.t1|Name=Gvermi11526.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=554bp
MFRSLRKAAQSLERGLDSAFSNAPPSHTAFKNVTLEFAAISVRLGPVFAE
GGYSFIHVATPLSPHVPSNTRYAVKRLSCADAESSRQAHCEIDLLRKLPP
HPNVVKFYDAIFQQAHAFLLFELLDGGTLPEMLSRSNPSAHKKLLILAHV
SSAIVHLHSQQPPLFIRDVKLENVLYDRLQRCYKLCDFGSATAHTCRPLS
RADILAVEEQIANNCTAMYRAPELVDLYSGKLICERADVWSLGCIWYALL
FGSLPFDGSSALQITNGLVDIPTEPSYPDEFILLLKKMLVVDPAHRYDSF
QVLQHADRILGRQTNPQVLRTGNELRTKRRHDFGIAADSRCADDAVDLPS
AVAPVSEASAAITPADPTPRSLIGHFDELLSGSERSRAPTAHPVSEPMRT
TGDQSNSGWADFDSAFGESTNCASKVASRVSSNPLLLDFAMPASTEPIRG
ARSHAGPFLPQSDALGAGKAFGGVGGRTPGSDRSSASSVSVAVRKSQGQA
CLVPSLIDLSDTTSSFGAAGSEERSGRGEGTHEQQQQRESGKAAKFDDLI
DFG*

spliced messenger RNA

>Gvermi11526.t1 ID=Gvermi11526.t1|Name=Gvermi11526.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1662bp|location=Sequence derived from alignment at ScGOVlb_3404:731963..733624+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAGGTCCCTTCGCAAGGCGGCGCAGTCGCTTGAGCGCGGCCTTGA
CTCGGCCTTCTCCAACGCCCCCCCCTCGCACACCGCCTTCAAAAACGTCA
CGCTTGAATTTGCCGCCATTTCCGTGCGGCTCGGACCCGTGTTTGCGGAG
GGCGGCTACTCTTTCATTCACGTCGCAACTCCGCTTTCGCCGCACGTCCC
CAGCAATACCCGATATGCCGTCAAGCGCCTGTCTTGCGCGGACGCAGAGT
CCAGTCGCCAGGCCCACTGCGAGATTGACTTGCTGCGGAAGCTTCCCCCG
CATCCAAACGTCGTCAAGTTCTACGACGCCATCTTTCAGCAAGCGCACGC
GTTTCTGCTCTTTGAACTGCTTGACGGTGGCACTCTGCCGGAGATGTTGT
CGCGTTCCAACCCATCCGCACACAAGAAGCTCCTCATTCTCGCGCACGTC
TCGTCTGCCATTGTTCACTTGCACTCACAACAGCCGCCGCTGTTCATTCG
CGACGTCAAACTGGAGAACGTTTTATACGATAGACTCCAACGTTGCTACA
AGCTGTGCGATTTCGGCAGCGCCACTGCGCACACATGCCGTCCGCTGTCG
CGTGCTGACATTCTGGCTGTCGAAGAGCAAATCGCCAACAACTGTACTGC
CATGTACCGAGCCCCGGAACTGGTCGATTTGTACTCGGGAAAGCTCATTT
GTGAACGCGCTGACGTGTGGTCCTTAGGTTGCATTTGGTACGCACTTTTA
TTTGGTTCATTGCCGTTTGACGGTTCCTCCGCGCTGCAAATCACAAATGG
CTTGGTGGACATTCCCACGGAACCAAGTTACCCAGATGAATTTATTTTGC
TGTTGAAGAAAATGCTCGTTGTCGATCCTGCCCATCGTTACGATTCCTTT
CAGGTTCTTCAACACGCGGATCGCATCCTAGGTCGTCAAACAAATCCCCA
GGTATTGCGCACCGGAAACGAGCTTCGAACGAAAAGACGTCATGATTTCG
GGATCGCTGCCGACTCGCGTTGCGCTGATGACGCCGTTGACTTGCCGAGC
GCTGTGGCACCAGTCTCGGAAGCAAGCGCGGCGATTACTCCAGCCGATCC
GACACCGCGGTCATTGATCGGGCACTTTGATGAATTACTGTCCGGTTCAG
AACGTTCGCGCGCACCAACTGCTCACCCTGTATCGGAGCCGATGCGCACC
ACTGGCGATCAGAGCAACAGCGGGTGGGCAGACTTTGATTCTGCTTTCGG
CGAGTCGACCAACTGTGCGTCGAAAGTGGCGTCGCGCGTCTCTTCAAACC
CGCTGCTGTTGGACTTTGCGATGCCTGCTTCGACTGAACCAATTCGAGGG
GCTCGCTCACACGCAGGACCTTTTCTGCCACAGAGCGACGCACTTGGTGC
AGGAAAAGCTTTTGGCGGCGTTGGAGGGCGCACACCAGGCAGCGATCGCT
CTTCTGCGAGTTCGGTGTCAGTTGCTGTGCGCAAATCGCAGGGGCAGGCA
TGTCTGGTGCCATCACTGATCGACCTATCAGATACAACAAGCTCTTTCGG
AGCTGCAGGTTCGGAAGAACGATCGGGGCGCGGCGAAGGTACGCATGAGC
AACAGCAGCAGCGCGAAAGTGGGAAAGCGGCAAAGTTTGACGACCTGATT
GACTTTGGATAA

protein sequence of Gvermi11526.t1

>Gvermi11526.t1 ID=Gvermi11526.t1|Name=Gvermi11526.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=554bp
MFRSLRKAAQSLERGLDSAFSNAPPSHTAFKNVTLEFAAISVRLGPVFAE
GGYSFIHVATPLSPHVPSNTRYAVKRLSCADAESSRQAHCEIDLLRKLPP
HPNVVKFYDAIFQQAHAFLLFELLDGGTLPEMLSRSNPSAHKKLLILAHV
SSAIVHLHSQQPPLFIRDVKLENVLYDRLQRCYKLCDFGSATAHTCRPLS
RADILAVEEQIANNCTAMYRAPELVDLYSGKLICERADVWSLGCIWYALL
FGSLPFDGSSALQITNGLVDIPTEPSYPDEFILLLKKMLVVDPAHRYDSF
QVLQHADRILGRQTNPQVLRTGNELRTKRRHDFGIAADSRCADDAVDLPS
AVAPVSEASAAITPADPTPRSLIGHFDELLSGSERSRAPTAHPVSEPMRT
TGDQSNSGWADFDSAFGESTNCASKVASRVSSNPLLLDFAMPASTEPIRG
ARSHAGPFLPQSDALGAGKAFGGVGGRTPGSDRSSASSVSVAVRKSQGQA
CLVPSLIDLSDTTSSFGAAGSEERSGRGEGTHEQQQQRESGKAAKFDDLI
DFG*

mRNA from alignment at ScGOVlb_3404:731963..733624+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11526.t1 ID=Gvermi11526.t1|Name=Gvermi11526.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1662bp|location=Sequence derived from alignment at ScGOVlb_3404:731963..733624+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCAGGTCCCTTCGCAAGGCGGCGCAGTCGCTTGAGCGCGGCCTTGA
CTCGGCCTTCTCCAACGCCCCCCCCTCGCACACCGCCTTCAAAAACGTCA
CGCTTGAATTTGCCGCCATTTCCGTGCGGCTCGGACCCGTGTTTGCGGAG
GGCGGCTACTCTTTCATTCACGTCGCAACTCCGCTTTCGCCGCACGTCCC
CAGCAATACCCGATATGCCGTCAAGCGCCTGTCTTGCGCGGACGCAGAGT
CCAGTCGCCAGGCCCACTGCGAGATTGACTTGCTGCGGAAGCTTCCCCCG
CATCCAAACGTCGTCAAGTTCTACGACGCCATCTTTCAGCAAGCGCACGC
GTTTCTGCTCTTTGAACTGCTTGACGGTGGCACTCTGCCGGAGATGTTGT
CGCGTTCCAACCCATCCGCACACAAGAAGCTCCTCATTCTCGCGCACGTC
TCGTCTGCCATTGTTCACTTGCACTCACAACAGCCGCCGCTGTTCATTCG
CGACGTCAAACTGGAGAACGTTTTATACGATAGACTCCAACGTTGCTACA
AGCTGTGCGATTTCGGCAGCGCCACTGCGCACACATGCCGTCCGCTGTCG
CGTGCTGACATTCTGGCTGTCGAAGAGCAAATCGCCAACAACTGTACTGC
CATGTACCGAGCCCCGGAACTGGTCGATTTGTACTCGGGAAAGCTCATTT
GTGAACGCGCTGACGTGTGGTCCTTAGGTTGCATTTGGTACGCACTTTTA
TTTGGTTCATTGCCGTTTGACGGTTCCTCCGCGCTGCAAATCACAAATGG
CTTGGTGGACATTCCCACGGAACCAAGTTACCCAGATGAATTTATTTTGC
TGTTGAAGAAAATGCTCGTTGTCGATCCTGCCCATCGTTACGATTCCTTT
CAGGTTCTTCAACACGCGGATCGCATCCTAGGTCGTCAAACAAATCCCCA
GGTATTGCGCACCGGAAACGAGCTTCGAACGAAAAGACGTCATGATTTCG
GGATCGCTGCCGACTCGCGTTGCGCTGATGACGCCGTTGACTTGCCGAGC
GCTGTGGCACCAGTCTCGGAAGCAAGCGCGGCGATTACTCCAGCCGATCC
GACACCGCGGTCATTGATCGGGCACTTTGATGAATTACTGTCCGGTTCAG
AACGTTCGCGCGCACCAACTGCTCACCCTGTATCGGAGCCGATGCGCACC
ACTGGCGATCAGAGCAACAGCGGGTGGGCAGACTTTGATTCTGCTTTCGG
CGAGTCGACCAACTGTGCGTCGAAAGTGGCGTCGCGCGTCTCTTCAAACC
CGCTGCTGTTGGACTTTGCGATGCCTGCTTCGACTGAACCAATTCGAGGG
GCTCGCTCACACGCAGGACCTTTTCTGCCACAGAGCGACGCACTTGGTGC
AGGAAAAGCTTTTGGCGGCGTTGGAGGGCGCACACCAGGCAGCGATCGCT
CTTCTGCGAGTTCGGTGTCAGTTGCTGTGCGCAAATCGCAGGGGCAGGCA
TGTCTGGTGCCATCACTGATCGACCTATCAGATACAACAAGCTCTTTCGG
AGCTGCAGGTTCGGAAGAACGATCGGGGCGCGGCGAAGGTACGCATGAGC
AACAGCAGCAGCGCGAAAGTGGGAAAGCGGCAAAGTTTGACGACCTGATT
GACTTTGGATAA

Coding sequence (CDS) from alignment at ScGOVlb_3404:731963..733624+

>Gvermi11526.t1 ID=Gvermi11526.t1|Name=Gvermi11526.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1662bp|location=Sequence derived from alignment at ScGOVlb_3404:731963..733624+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTCAGGTCCCTTCGCAAGGCGGCGCAGTCGCTTGAGCGCGGCCTTGA
CTCGGCCTTCTCCAACGCCCCCCCCTCGCACACCGCCTTCAAAAACGTCA
CGCTTGAATTTGCCGCCATTTCCGTGCGGCTCGGACCCGTGTTTGCGGAG
GGCGGCTACTCTTTCATTCACGTCGCAACTCCGCTTTCGCCGCACGTCCC
CAGCAATACCCGATATGCCGTCAAGCGCCTGTCTTGCGCGGACGCAGAGT
CCAGTCGCCAGGCCCACTGCGAGATTGACTTGCTGCGGAAGCTTCCCCCG
CATCCAAACGTCGTCAAGTTCTACGACGCCATCTTTCAGCAAGCGCACGC
GTTTCTGCTCTTTGAACTGCTTGACGGTGGCACTCTGCCGGAGATGTTGT
CGCGTTCCAACCCATCCGCACACAAGAAGCTCCTCATTCTCGCGCACGTC
TCGTCTGCCATTGTTCACTTGCACTCACAACAGCCGCCGCTGTTCATTCG
CGACGTCAAACTGGAGAACGTTTTATACGATAGACTCCAACGTTGCTACA
AGCTGTGCGATTTCGGCAGCGCCACTGCGCACACATGCCGTCCGCTGTCG
CGTGCTGACATTCTGGCTGTCGAAGAGCAAATCGCCAACAACTGTACTGC
CATGTACCGAGCCCCGGAACTGGTCGATTTGTACTCGGGAAAGCTCATTT
GTGAACGCGCTGACGTGTGGTCCTTAGGTTGCATTTGGTACGCACTTTTA
TTTGGTTCATTGCCGTTTGACGGTTCCTCCGCGCTGCAAATCACAAATGG
CTTGGTGGACATTCCCACGGAACCAAGTTACCCAGATGAATTTATTTTGC
TGTTGAAGAAAATGCTCGTTGTCGATCCTGCCCATCGTTACGATTCCTTT
CAGGTTCTTCAACACGCGGATCGCATCCTAGGTCGTCAAACAAATCCCCA
GGTATTGCGCACCGGAAACGAGCTTCGAACGAAAAGACGTCATGATTTCG
GGATCGCTGCCGACTCGCGTTGCGCTGATGACGCCGTTGACTTGCCGAGC
GCTGTGGCACCAGTCTCGGAAGCAAGCGCGGCGATTACTCCAGCCGATCC
GACACCGCGGTCATTGATCGGGCACTTTGATGAATTACTGTCCGGTTCAG
AACGTTCGCGCGCACCAACTGCTCACCCTGTATCGGAGCCGATGCGCACC
ACTGGCGATCAGAGCAACAGCGGGTGGGCAGACTTTGATTCTGCTTTCGG
CGAGTCGACCAACTGTGCGTCGAAAGTGGCGTCGCGCGTCTCTTCAAACC
CGCTGCTGTTGGACTTTGCGATGCCTGCTTCGACTGAACCAATTCGAGGG
GCTCGCTCACACGCAGGACCTTTTCTGCCACAGAGCGACGCACTTGGTGC
AGGAAAAGCTTTTGGCGGCGTTGGAGGGCGCACACCAGGCAGCGATCGCT
CTTCTGCGAGTTCGGTGTCAGTTGCTGTGCGCAAATCGCAGGGGCAGGCA
TGTCTGGTGCCATCACTGATCGACCTATCAGATACAACAAGCTCTTTCGG
AGCTGCAGGTTCGGAAGAACGATCGGGGCGCGGCGAAGGTACGCATGAGC
AACAGCAGCAGCGCGAAAGTGGGAAAGCGGCAAAGTTTGACGACCTGATT
GACTTTGGATAA