Gvermi11524.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11524.t1
Unique NameGvermi11524.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length246
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:726603..727340 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2850.Phatr48253
PFAMsBACK,BTB,Kelch_1,Kelch_4,Kelch_6
Max annot lvl2759|Eukaryota
KEGG koko:K10442,ko:K20285,ko:K21912
Evalue1.46e-22
EggNOG OGsKOG4441@1|root,KOG4441@2759|Eukaryota
Descriptionprotein ubiquitination
COG categoryKLT
BRITEko00000,ko04121,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11524Gvermi11524Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 726603..727340 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11524.t1.start1Gvermi11524.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 726603..726605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11524.t1.CDS1Gvermi11524.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 726603..727340 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11524.t1.exon1Gvermi11524.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 726603..727340 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11524.t1.stop1Gvermi11524.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 727338..727340 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11524.t1Gvermi11524.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 726603..727340 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11524.t1 ID=Gvermi11524.t1|Name=Gvermi11524.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=246bp
MRFVPAALLAAALCACALAKSGINPCHGTKSVYGQGVSCEKVEFPVGMCS
ACKLKPFNAANGFFKDCAAIFDLDDAVCQAKLRQYARLNSHCDPVRARQV
QDFNNGANRRGLDYFVYSVCEECCDCVPIGARPEQHYWRAKNNMLLNSQR
GNCPAHAFYDVCAVLPNIRFSKTPGGQDHWDWPKICPLITKWQFSPASRN
WLTKSYVNMDWRINRFLIWFFWDNHCGFSQTWKNCVAMEHAQKRV*
back to top

spliced messenger RNA

>Gvermi11524.t1 ID=Gvermi11524.t1|Name=Gvermi11524.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=738bp|location=Sequence derived from alignment at ScGOVlb_3404:726603..727340+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTCGTCCCCGCCGCGCTGCTCGCGGCCGCGCTGTGCGCGTGCGC
GCTCGCCAAGAGCGGCATCAACCCGTGCCATGGCACCAAGAGCGTGTACG
GGCAGGGCGTGAGCTGCGAGAAGGTGGAGTTCCCGGTGGGCATGTGCTCC
GCGTGCAAGCTCAAGCCGTTCAACGCCGCCAACGGCTTCTTCAAGGACTG
CGCGGCCATCTTCGACCTGGACGACGCCGTGTGCCAGGCCAAGCTGCGCC
AGTACGCGCGCCTCAACTCGCACTGCGACCCGGTGCGCGCGCGGCAGGTG
CAGGACTTTAACAACGGCGCCAACCGCAGGGGGCTGGACTACTTTGTGTA
CTCGGTGTGCGAGGAGTGCTGCGACTGCGTGCCCATCGGGGCGCGGCCCG
AGCAGCACTACTGGCGCGCCAAGAACAACATGCTGCTCAACAGCCAGCGC
GGCAACTGCCCGGCGCACGCCTTCTACGACGTGTGCGCCGTGCTGCCCAA
CATCCGCTTCTCCAAGACGCCCGGCGGGCAGGACCACTGGGACTGGCCCA
AGATCTGCCCGCTCATCACCAAGTGGCAGTTCTCGCCCGCGTCGCGCAAC
TGGCTCACCAAGTCGTACGTCAACATGGACTGGCGCATCAACCGCTTCCT
CATCTGGTTCTTCTGGGACAACCACTGCGGCTTCTCGCAGACGTGGAAGA
ACTGCGTGGCGATGGAGCACGCGCAGAAACGCGTGTGA
back to top

protein sequence of Gvermi11524.t1

>Gvermi11524.t1 ID=Gvermi11524.t1|Name=Gvermi11524.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=246bp
MRFVPAALLAAALCACALAKSGINPCHGTKSVYGQGVSCEKVEFPVGMCS
ACKLKPFNAANGFFKDCAAIFDLDDAVCQAKLRQYARLNSHCDPVRARQV
QDFNNGANRRGLDYFVYSVCEECCDCVPIGARPEQHYWRAKNNMLLNSQR
GNCPAHAFYDVCAVLPNIRFSKTPGGQDHWDWPKICPLITKWQFSPASRN
WLTKSYVNMDWRINRFLIWFFWDNHCGFSQTWKNCVAMEHAQKRV*
back to top

mRNA from alignment at ScGOVlb_3404:726603..727340+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11524.t1 ID=Gvermi11524.t1|Name=Gvermi11524.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=738bp|location=Sequence derived from alignment at ScGOVlb_3404:726603..727340+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTTCGTCCCCGCCGCGCTGCTCGCGGCCGCGCTGTGCGCGTGCGC
GCTCGCCAAGAGCGGCATCAACCCGTGCCATGGCACCAAGAGCGTGTACG
GGCAGGGCGTGAGCTGCGAGAAGGTGGAGTTCCCGGTGGGCATGTGCTCC
GCGTGCAAGCTCAAGCCGTTCAACGCCGCCAACGGCTTCTTCAAGGACTG
CGCGGCCATCTTCGACCTGGACGACGCCGTGTGCCAGGCCAAGCTGCGCC
AGTACGCGCGCCTCAACTCGCACTGCGACCCGGTGCGCGCGCGGCAGGTG
CAGGACTTTAACAACGGCGCCAACCGCAGGGGGCTGGACTACTTTGTGTA
CTCGGTGTGCGAGGAGTGCTGCGACTGCGTGCCCATCGGGGCGCGGCCCG
AGCAGCACTACTGGCGCGCCAAGAACAACATGCTGCTCAACAGCCAGCGC
GGCAACTGCCCGGCGCACGCCTTCTACGACGTGTGCGCCGTGCTGCCCAA
CATCCGCTTCTCCAAGACGCCCGGCGGGCAGGACCACTGGGACTGGCCCA
AGATCTGCCCGCTCATCACCAAGTGGCAGTTCTCGCCCGCGTCGCGCAAC
TGGCTCACCAAGTCGTACGTCAACATGGACTGGCGCATCAACCGCTTCCT
CATCTGGTTCTTCTGGGACAACCACTGCGGCTTCTCGCAGACGTGGAAGA
ACTGCGTGGCGATGGAGCACGCGCAGAAACGCGTGTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:726603..727340+

>Gvermi11524.t1 ID=Gvermi11524.t1|Name=Gvermi11524.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=738bp|location=Sequence derived from alignment at ScGOVlb_3404:726603..727340+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTTCGTCCCCGCCGCGCTGCTCGCGGCCGCGCTGTGCGCGTGCGC
GCTCGCCAAGAGCGGCATCAACCCGTGCCATGGCACCAAGAGCGTGTACG
GGCAGGGCGTGAGCTGCGAGAAGGTGGAGTTCCCGGTGGGCATGTGCTCC
GCGTGCAAGCTCAAGCCGTTCAACGCCGCCAACGGCTTCTTCAAGGACTG
CGCGGCCATCTTCGACCTGGACGACGCCGTGTGCCAGGCCAAGCTGCGCC
AGTACGCGCGCCTCAACTCGCACTGCGACCCGGTGCGCGCGCGGCAGGTG
CAGGACTTTAACAACGGCGCCAACCGCAGGGGGCTGGACTACTTTGTGTA
CTCGGTGTGCGAGGAGTGCTGCGACTGCGTGCCCATCGGGGCGCGGCCCG
AGCAGCACTACTGGCGCGCCAAGAACAACATGCTGCTCAACAGCCAGCGC
GGCAACTGCCCGGCGCACGCCTTCTACGACGTGTGCGCCGTGCTGCCCAA
CATCCGCTTCTCCAAGACGCCCGGCGGGCAGGACCACTGGGACTGGCCCA
AGATCTGCCCGCTCATCACCAAGTGGCAGTTCTCGCCCGCGTCGCGCAAC
TGGCTCACCAAGTCGTACGTCAACATGGACTGGCGCATCAACCGCTTCCT
CATCTGGTTCTTCTGGGACAACCACTGCGGCTTCTCGCAGACGTGGAAGA
ACTGCGTGGCGATGGAGCACGCGCAGAAACGCGTGTGA
back to top