Gvermi11515.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11515.t1
Unique NameGvermi11515.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length234
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:655772..656567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LM97
PFAMsRsfS
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006417,GO:0008150,GO:0009507,GO:0009536,GO:0009889,GO:0009890,GO:0009892,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0017148,GO:0019222,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0034248,GO:0034249,GO:0043021,GO:0043023,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0080090,GO:0090069,GO:0090071,GO:2000112,GO:2000113
Evalue1.16e-23
EggNOG OGsCOG0799@1|root,2RY19@2759|Eukaryota
DescriptionRibosomal silencing factor during starvation
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11515Gvermi11515Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 655772..656567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11515.t1Gvermi11515.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 655772..656567 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11515.t1.stop1Gvermi11515.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 655772..655774 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11515.t1.CDS1Gvermi11515.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 655772..655944 -
Gvermi11515.t1.CDS2Gvermi11515.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 656039..656567 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11515.t1.exon1Gvermi11515.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 655772..655944 -
Gvermi11515.t1.exon2Gvermi11515.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 656039..656567 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11515.t1.intron1Gvermi11515.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 655945..656038 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11515.t1.start1Gvermi11515.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 656565..656567 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11515.t1 ID=Gvermi11515.t1|Name=Gvermi11515.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=234bp
MEDPYEERSLNMGSFSTSQSSQVFEGDNIVNMGNGEFDFDENDEGLDIVD
IPPESRPIRRKRVRKNMGLLLDEISTEPISDLASDADELPPVEQDESAKF
VRTVVRAIDQRKGENIVAFRVSKLTYITSFVVIASAKNTPQMKAIANLVE
EDMSKEHDRSFRRKDGIPESGWILLDYGDFMVNIFSAAQRRNYNLEKLWQ
KAEEFDVSDEIVAKPDDAAVEASSAGLDDWLSE*
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spliced messenger RNA

>Gvermi11515.t1 ID=Gvermi11515.t1|Name=Gvermi11515.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=702bp|location=Sequence derived from alignment at ScGOVlb_3404:655772..656567- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGATCCGTATGAGGAACGTTCGCTGAATATGGGCTCTTTTAGCAC
CTCCCAATCGTCTCAAGTCTTTGAGGGGGACAACATTGTGAACATGGGGA
ATGGAGAATTTGATTTTGACGAGAATGATGAGGGATTAGATATTGTTGAT
ATTCCGCCAGAAAGCCGCCCTATTCGTCGAAAACGGGTGCGAAAGAATAT
GGGCTTGCTCCTCGACGAAATCTCCACAGAACCAATTTCAGATTTAGCCA
GTGATGCAGATGAGCTGCCGCCTGTTGAACAAGATGAGAGCGCGAAATTC
GTGCGAACGGTTGTGCGCGCGATAGACCAAAGAAAAGGAGAAAACATCGT
TGCTTTCCGCGTGAGTAAGTTGACATATATAACCAGTTTCGTCGTCATAG
CTAGCGCAAAGAACACGCCGCAGATGAAAGCCATCGCCAACTTGGTAGAA
GAGGACATGTCCAAGGAACATGACAGGTCTTTCCGGAGAAAAGACGGCAT
TCCAGAATCTGGGTGGATTCTATTGGATTATGGTGACTTCATGGTTAATA
TATTTTCGGCAGCTCAAAGGAGAAATTATAACTTGGAAAAGTTGTGGCAA
AAGGCTGAAGAGTTTGACGTTTCAGATGAAATCGTGGCCAAACCAGACGA
CGCAGCCGTTGAAGCATCGAGCGCGGGATTGGATGACTGGCTGAGCGAGT
AA
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protein sequence of Gvermi11515.t1

>Gvermi11515.t1 ID=Gvermi11515.t1|Name=Gvermi11515.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=234bp
MEDPYEERSLNMGSFSTSQSSQVFEGDNIVNMGNGEFDFDENDEGLDIVD
IPPESRPIRRKRVRKNMGLLLDEISTEPISDLASDADELPPVEQDESAKF
VRTVVRAIDQRKGENIVAFRVSKLTYITSFVVIASAKNTPQMKAIANLVE
EDMSKEHDRSFRRKDGIPESGWILLDYGDFMVNIFSAAQRRNYNLEKLWQ
KAEEFDVSDEIVAKPDDAAVEASSAGLDDWLSE*
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mRNA from alignment at ScGOVlb_3404:655772..656567-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11515.t1 ID=Gvermi11515.t1|Name=Gvermi11515.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=796bp|location=Sequence derived from alignment at ScGOVlb_3404:655772..656567- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGATCCGTATGAGGAACGTTCGCTGAATATGGGCTCTTTTAGCAC
CTCCCAATCGTCTCAAGTCTTTGAGGGGGACAACATTGTGAACATGGGGA
ATGGAGAATTTGATTTTGACGAGAATGATGAGGGATTAGATATTGTTGAT
ATTCCGCCAGAAAGCCGCCCTATTCGTCGAAAACGGGTGCGAAAGAATAT
GGGCTTGCTCCTCGACGAAATCTCCACAGAACCAATTTCAGATTTAGCCA
GTGATGCAGATGAGCTGCCGCCTGTTGAACAAGATGAGAGCGCGAAATTC
GTGCGAACGGTTGTGCGCGCGATAGACCAAAGAAAAGGAGAAAACATCGT
TGCTTTCCGCGTGAGTAAGTTGACATATATAACCAGTTTCGTCGTCATAG
CTAGCGCAAAGAACACGCCGCAGATGAAAGCCATCGCCAACTTGGTAGAA
GAGGACATGTCCAAGGAACATGACAGGTCTTTCCGGAGAAAAGACGGCAT
TCCAGAATCTGGGTGGATTCTATTGGATTGTAAGTTATATGAGTTTACAT
GATGTATCAAAGAGCGCGACAACCCATTCTGCGGACACTAACACGTTTTG
CTTCTTGGGGTTTCTCTAATCAGATGGTGACTTCATGGTTAATATATTTT
CGGCAGCTCAAAGGAGAAATTATAACTTGGAAAAGTTGTGGCAAAAGGCT
GAAGAGTTTGACGTTTCAGATGAAATCGTGGCCAAACCAGACGACGCAGC
CGTTGAAGCATCGAGCGCGGGATTGGATGACTGGCTGAGCGAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:655772..656567-

>Gvermi11515.t1 ID=Gvermi11515.t1|Name=Gvermi11515.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=702bp|location=Sequence derived from alignment at ScGOVlb_3404:655772..656567- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGATCCGTATGAGGAACGTTCGCTGAATATGGGCTCTTTTAGCAC
CTCCCAATCGTCTCAAGTCTTTGAGGGGGACAACATTGTGAACATGGGGA
ATGGAGAATTTGATTTTGACGAGAATGATGAGGGATTAGATATTGTTGAT
ATTCCGCCAGAAAGCCGCCCTATTCGTCGAAAACGGGTGCGAAAGAATAT
GGGCTTGCTCCTCGACGAAATCTCCACAGAACCAATTTCAGATTTAGCCA
GTGATGCAGATGAGCTGCCGCCTGTTGAACAAGATGAGAGCGCGAAATTC
GTGCGAACGGTTGTGCGCGCGATAGACCAAAGAAAAGGAGAAAACATCGT
TGCTTTCCGCGTGAGTAAGTTGACATATATAACCAGTTTCGTCGTCATAG
CTAGCGCAAAGAACACGCCGCAGATGAAAGCCATCGCCAACTTGGTAGAA
GAGGACATGTCCAAGGAACATGACAGGTCTTTCCGGAGAAAAGACGGCAT
TCCAGAATCTGGGTGGATTCTATTGGATTATGGTGACTTCATGGTTAATA
TATTTTCGGCAGCTCAAAGGAGAAATTATAACTTGGAAAAGTTGTGGCAA
AAGGCTGAAGAGTTTGACGTTTCAGATGAAATCGTGGCCAAACCAGACGA
CGCAGCCGTTGAAGCATCGAGCGCGGGATTGGATGACTGGCTGAGCGAGT
AA
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