Gvermi11513.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11513.t1
Unique NameGvermi11513.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length538
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:651537..653150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707714.1
PFAMsPH,Pkinase
Max annot lvl2759|Eukaryota
KEGG koko:K04456,ko:K13303
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04012,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04140,ko04150,ko04151,ko04152,ko04210,ko04211,ko04212,ko04213,ko04218,ko04261,ko04370,ko04371,ko04380,ko04510,ko04550,ko04611,ko04620,ko04630,ko04660,ko04662,ko04664,ko04666,ko04668,ko04722,ko04725,ko04728,ko04910,ko04914,ko04915,ko04917,ko04919,ko04920,ko04922,ko04923,ko04926,ko04931,ko04932,ko04933,ko04973,ko05142,ko05145,ko05152,ko05160,ko05161,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05218,ko05220,ko05221,ko05222,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,ko05418,map01521,map01522,map01524,map04010,map04012,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04140,map04150,map04151,map04152,map04210,map04211,map04212,map04213,map04218,map04261,map04370,map04371,map04380,map04510,map04550,map04611,map04620,map04630,map04660,map04662,map04664,map04666,map04668,map04722,map04725,map04728,map04910,map04914,map04915,map04917,map04919,map04920,map04922,map04923,map04926,map04931,map04932,map04933,map04973,map05142,map05145,map05152,map05160,map05161,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05218,map05220,map05221,map05222,map05223,map05224,map05225,map05226,map05230,map05231,map05418
KEGG ModuleM00676
Evalue5.58e-98
EggNOG OGsKOG0598@1|root,KOG0598@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11513Gvermi11513Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 651537..653150 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11513.t1.stop1Gvermi11513.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 651537..651539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11513.t1.CDS1Gvermi11513.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 651537..653150 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11513.t1.exon1Gvermi11513.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 651537..653150 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11513.t1.start1Gvermi11513.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 653148..653150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11513.t1Gvermi11513.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 651537..653150 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11513.t1 ID=Gvermi11513.t1|Name=Gvermi11513.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=538bp
MNGARVARSSHEEALSLVRRIPAVKSAWVYARPVGNLRWRAAKRCWAELR
GNTLLLHVVGEQSSRANPEQLARRTASENVMMINLKDSRIRSETKKNRIR
IKRASGESSIELKMKDAVETKKWHSALVRAATHRATSLNDFEILSQVGKG
ASGRVFLVRDRLTAEQLALKVIEKSFVYENDDAYRHALDERLVLEMACDH
PFILNLRYAFQTSKRLYLVTEFCDGGDLFDYLKRRGKPFKEPEGRRIAAE
ILLALEYIHSLGVVYRDLKLENVLLDLDGHIRIADFGLSKLLGKRRPNSR
RPPPIPSPNLRLAPPKPVNMTKTFCGTREYIAPEMLNGSEYGQSVDLWAF
GILLYEILCGRTPFYSRNREEVYTKIENGPLRFPRNLSAEVVSLIRGLLD
RNPSTRLGLGPQGINEIKQHDFFHGMDWEALFLKEDHPDNIVVERNPIGI
AGENSSSKSDPEKLKSAKKIVNELDMTGKEADMLLEDEMHEEKKRPDVFA
LFVSTKKKAANIAGYSYAAVPQPPPRAVLLETAQVSR*
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spliced messenger RNA

>Gvermi11513.t1 ID=Gvermi11513.t1|Name=Gvermi11513.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at ScGOVlb_3404:651537..653150- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGGCGCTCGCGTCGCGCGCAGCTCCCATGAAGAGGCCCTCAGTCT
CGTTCGCCGCATCCCCGCCGTCAAGTCCGCTTGGGTCTACGCTCGCCCCG
TCGGCAACTTGCGCTGGCGCGCCGCCAAGCGCTGCTGGGCAGAGCTGCGT
GGGAACACCCTGTTGCTGCACGTCGTCGGCGAGCAGAGCTCCCGTGCCAA
CCCCGAGCAGCTTGCCCGCCGCACCGCCTCCGAAAACGTCATGATGATTA
ATCTCAAGGACTCCCGTATCCGCAGTGAAACCAAGAAGAACCGCATCCGC
ATCAAGCGTGCATCGGGGGAGAGCTCCATCGAGCTCAAGATGAAGGACGC
CGTCGAGACCAAGAAGTGGCACTCCGCGCTTGTGCGTGCCGCTACGCATC
GCGCCACCTCCTTGAACGACTTTGAGATTTTGTCTCAGGTCGGAAAGGGC
GCTAGTGGCCGCGTGTTCCTTGTGCGCGACCGACTCACCGCCGAGCAGCT
GGCTCTCAAGGTCATCGAGAAGAGTTTTGTTTACGAAAACGACGATGCCT
ATCGCCACGCTCTTGATGAACGGCTTGTGTTGGAGATGGCATGCGACCAT
CCCTTTATTCTCAACCTCCGCTACGCTTTCCAAACATCCAAGCGTCTGTA
CCTCGTCACCGAGTTTTGTGACGGCGGCGACTTGTTCGACTACCTCAAGA
GACGCGGTAAGCCTTTTAAAGAACCTGAGGGCCGTCGCATAGCCGCGGAA
ATCCTGCTCGCGTTAGAGTATATTCATAGCCTTGGCGTCGTGTATCGCGA
CCTCAAGCTTGAGAACGTTTTGCTTGACCTCGACGGCCACATCCGCATTG
CCGATTTTGGTCTGTCAAAGCTTTTAGGCAAGCGGAGACCCAACTCTCGC
AGACCACCGCCGATTCCCTCCCCTAACTTGCGCCTCGCGCCGCCGAAGCC
TGTGAACATGACCAAGACTTTTTGTGGCACCAGAGAATACATTGCTCCCG
AGATGCTCAACGGAAGCGAGTACGGTCAGTCGGTTGACTTGTGGGCGTTT
GGCATTTTGCTGTATGAGATTTTGTGCGGTAGAACTCCTTTTTACTCTCG
CAATCGTGAGGAGGTGTACACCAAGATTGAGAATGGGCCTTTACGCTTTC
CGAGAAATCTTTCTGCGGAAGTCGTATCGCTCATACGCGGCTTATTGGAT
CGAAATCCTAGCACACGGTTAGGTTTGGGTCCTCAAGGTATCAATGAAAT
CAAGCAGCATGACTTTTTCCACGGAATGGATTGGGAGGCGCTCTTCCTCA
AAGAAGACCATCCGGATAACATTGTGGTTGAAAGAAATCCTATTGGCATT
GCTGGCGAGAACAGCTCCTCCAAATCGGACCCTGAAAAGCTCAAGTCCGC
CAAGAAAATTGTCAATGAACTTGATATGACCGGGAAGGAAGCAGACATGT
TGCTCGAAGATGAAATGCATGAAGAAAAGAAGCGACCAGATGTGTTTGCT
TTATTTGTCTCTACAAAGAAAAAAGCCGCCAATATCGCCGGTTATTCGTA
TGCCGCAGTACCTCAACCACCTCCGCGAGCAGTCCTGCTGGAAACTGCTC
AGGTGTCACGGTAG
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protein sequence of Gvermi11513.t1

>Gvermi11513.t1 ID=Gvermi11513.t1|Name=Gvermi11513.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=538bp
MNGARVARSSHEEALSLVRRIPAVKSAWVYARPVGNLRWRAAKRCWAELR
GNTLLLHVVGEQSSRANPEQLARRTASENVMMINLKDSRIRSETKKNRIR
IKRASGESSIELKMKDAVETKKWHSALVRAATHRATSLNDFEILSQVGKG
ASGRVFLVRDRLTAEQLALKVIEKSFVYENDDAYRHALDERLVLEMACDH
PFILNLRYAFQTSKRLYLVTEFCDGGDLFDYLKRRGKPFKEPEGRRIAAE
ILLALEYIHSLGVVYRDLKLENVLLDLDGHIRIADFGLSKLLGKRRPNSR
RPPPIPSPNLRLAPPKPVNMTKTFCGTREYIAPEMLNGSEYGQSVDLWAF
GILLYEILCGRTPFYSRNREEVYTKIENGPLRFPRNLSAEVVSLIRGLLD
RNPSTRLGLGPQGINEIKQHDFFHGMDWEALFLKEDHPDNIVVERNPIGI
AGENSSSKSDPEKLKSAKKIVNELDMTGKEADMLLEDEMHEEKKRPDVFA
LFVSTKKKAANIAGYSYAAVPQPPPRAVLLETAQVSR*
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mRNA from alignment at ScGOVlb_3404:651537..653150-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11513.t1 ID=Gvermi11513.t1|Name=Gvermi11513.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at ScGOVlb_3404:651537..653150- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACGGCGCTCGCGTCGCGCGCAGCTCCCATGAAGAGGCCCTCAGTCT
CGTTCGCCGCATCCCCGCCGTCAAGTCCGCTTGGGTCTACGCTCGCCCCG
TCGGCAACTTGCGCTGGCGCGCCGCCAAGCGCTGCTGGGCAGAGCTGCGT
GGGAACACCCTGTTGCTGCACGTCGTCGGCGAGCAGAGCTCCCGTGCCAA
CCCCGAGCAGCTTGCCCGCCGCACCGCCTCCGAAAACGTCATGATGATTA
ATCTCAAGGACTCCCGTATCCGCAGTGAAACCAAGAAGAACCGCATCCGC
ATCAAGCGTGCATCGGGGGAGAGCTCCATCGAGCTCAAGATGAAGGACGC
CGTCGAGACCAAGAAGTGGCACTCCGCGCTTGTGCGTGCCGCTACGCATC
GCGCCACCTCCTTGAACGACTTTGAGATTTTGTCTCAGGTCGGAAAGGGC
GCTAGTGGCCGCGTGTTCCTTGTGCGCGACCGACTCACCGCCGAGCAGCT
GGCTCTCAAGGTCATCGAGAAGAGTTTTGTTTACGAAAACGACGATGCCT
ATCGCCACGCTCTTGATGAACGGCTTGTGTTGGAGATGGCATGCGACCAT
CCCTTTATTCTCAACCTCCGCTACGCTTTCCAAACATCCAAGCGTCTGTA
CCTCGTCACCGAGTTTTGTGACGGCGGCGACTTGTTCGACTACCTCAAGA
GACGCGGTAAGCCTTTTAAAGAACCTGAGGGCCGTCGCATAGCCGCGGAA
ATCCTGCTCGCGTTAGAGTATATTCATAGCCTTGGCGTCGTGTATCGCGA
CCTCAAGCTTGAGAACGTTTTGCTTGACCTCGACGGCCACATCCGCATTG
CCGATTTTGGTCTGTCAAAGCTTTTAGGCAAGCGGAGACCCAACTCTCGC
AGACCACCGCCGATTCCCTCCCCTAACTTGCGCCTCGCGCCGCCGAAGCC
TGTGAACATGACCAAGACTTTTTGTGGCACCAGAGAATACATTGCTCCCG
AGATGCTCAACGGAAGCGAGTACGGTCAGTCGGTTGACTTGTGGGCGTTT
GGCATTTTGCTGTATGAGATTTTGTGCGGTAGAACTCCTTTTTACTCTCG
CAATCGTGAGGAGGTGTACACCAAGATTGAGAATGGGCCTTTACGCTTTC
CGAGAAATCTTTCTGCGGAAGTCGTATCGCTCATACGCGGCTTATTGGAT
CGAAATCCTAGCACACGGTTAGGTTTGGGTCCTCAAGGTATCAATGAAAT
CAAGCAGCATGACTTTTTCCACGGAATGGATTGGGAGGCGCTCTTCCTCA
AAGAAGACCATCCGGATAACATTGTGGTTGAAAGAAATCCTATTGGCATT
GCTGGCGAGAACAGCTCCTCCAAATCGGACCCTGAAAAGCTCAAGTCCGC
CAAGAAAATTGTCAATGAACTTGATATGACCGGGAAGGAAGCAGACATGT
TGCTCGAAGATGAAATGCATGAAGAAAAGAAGCGACCAGATGTGTTTGCT
TTATTTGTCTCTACAAAGAAAAAAGCCGCCAATATCGCCGGTTATTCGTA
TGCCGCAGTACCTCAACCACCTCCGCGAGCAGTCCTGCTGGAAACTGCTC
AGGTGTCACGGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:651537..653150-

>Gvermi11513.t1 ID=Gvermi11513.t1|Name=Gvermi11513.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1614bp|location=Sequence derived from alignment at ScGOVlb_3404:651537..653150- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACGGCGCTCGCGTCGCGCGCAGCTCCCATGAAGAGGCCCTCAGTCT
CGTTCGCCGCATCCCCGCCGTCAAGTCCGCTTGGGTCTACGCTCGCCCCG
TCGGCAACTTGCGCTGGCGCGCCGCCAAGCGCTGCTGGGCAGAGCTGCGT
GGGAACACCCTGTTGCTGCACGTCGTCGGCGAGCAGAGCTCCCGTGCCAA
CCCCGAGCAGCTTGCCCGCCGCACCGCCTCCGAAAACGTCATGATGATTA
ATCTCAAGGACTCCCGTATCCGCAGTGAAACCAAGAAGAACCGCATCCGC
ATCAAGCGTGCATCGGGGGAGAGCTCCATCGAGCTCAAGATGAAGGACGC
CGTCGAGACCAAGAAGTGGCACTCCGCGCTTGTGCGTGCCGCTACGCATC
GCGCCACCTCCTTGAACGACTTTGAGATTTTGTCTCAGGTCGGAAAGGGC
GCTAGTGGCCGCGTGTTCCTTGTGCGCGACCGACTCACCGCCGAGCAGCT
GGCTCTCAAGGTCATCGAGAAGAGTTTTGTTTACGAAAACGACGATGCCT
ATCGCCACGCTCTTGATGAACGGCTTGTGTTGGAGATGGCATGCGACCAT
CCCTTTATTCTCAACCTCCGCTACGCTTTCCAAACATCCAAGCGTCTGTA
CCTCGTCACCGAGTTTTGTGACGGCGGCGACTTGTTCGACTACCTCAAGA
GACGCGGTAAGCCTTTTAAAGAACCTGAGGGCCGTCGCATAGCCGCGGAA
ATCCTGCTCGCGTTAGAGTATATTCATAGCCTTGGCGTCGTGTATCGCGA
CCTCAAGCTTGAGAACGTTTTGCTTGACCTCGACGGCCACATCCGCATTG
CCGATTTTGGTCTGTCAAAGCTTTTAGGCAAGCGGAGACCCAACTCTCGC
AGACCACCGCCGATTCCCTCCCCTAACTTGCGCCTCGCGCCGCCGAAGCC
TGTGAACATGACCAAGACTTTTTGTGGCACCAGAGAATACATTGCTCCCG
AGATGCTCAACGGAAGCGAGTACGGTCAGTCGGTTGACTTGTGGGCGTTT
GGCATTTTGCTGTATGAGATTTTGTGCGGTAGAACTCCTTTTTACTCTCG
CAATCGTGAGGAGGTGTACACCAAGATTGAGAATGGGCCTTTACGCTTTC
CGAGAAATCTTTCTGCGGAAGTCGTATCGCTCATACGCGGCTTATTGGAT
CGAAATCCTAGCACACGGTTAGGTTTGGGTCCTCAAGGTATCAATGAAAT
CAAGCAGCATGACTTTTTCCACGGAATGGATTGGGAGGCGCTCTTCCTCA
AAGAAGACCATCCGGATAACATTGTGGTTGAAAGAAATCCTATTGGCATT
GCTGGCGAGAACAGCTCCTCCAAATCGGACCCTGAAAAGCTCAAGTCCGC
CAAGAAAATTGTCAATGAACTTGATATGACCGGGAAGGAAGCAGACATGT
TGCTCGAAGATGAAATGCATGAAGAAAAGAAGCGACCAGATGTGTTTGCT
TTATTTGTCTCTACAAAGAAAAAAGCCGCCAATATCGCCGGTTATTCGTA
TGCCGCAGTACCTCAACCACCTCCGCGAGCAGTCCTGCTGGAAACTGCTC
AGGTGTCACGGTAG
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