Gvermi11506.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11506.t1
Unique NameGvermi11506.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length666
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:629848..631845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11506Gvermi11506Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 629848..631845 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11506.t1.stop1Gvermi11506.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 629848..629850 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11506.t1.CDS1Gvermi11506.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 629848..631845 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11506.t1.exon1Gvermi11506.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 629848..631845 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11506.t1.start1Gvermi11506.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 631843..631845 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11506.t1Gvermi11506.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 629848..631845 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11506.t1 ID=Gvermi11506.t1|Name=Gvermi11506.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=666bp
MNVRFFTIILFATLLIKPCTSTPHRAETSGVVDQPVTPHSNTHHSNKLSA
FDHQRDKSGELEVDEESTRGQHFRQHTVVTKLMQPKSNPRGRSSNAKVAT
TGRENGSSTAAVHEDLTESYGNPTTSHAGVDTSSGFPISYDDEQLEHGTQ
NNTEDGSHHHQHHNHEQALDIEEQKLRVATIKLVKWLRNRLRKRLKDVAH
LENDVTTENELLKNLREEIEDASRKREDEIKQKLQTRKELSDFRRHSNPP
DVGIKRVQSQTKALSDQLDRLKEAYESMTARHRDLENKLRSAGFTHWLEA
RGREYFPDTAVGVLSKSAQILGPVTHGFQRALLFDDRLSTEMEQIIPGSG
ESILGKIVWDISMMVPFIPFLMLLRFANGMIRCLSVYDIVLCGSGLFTAE
SFLCLLMSVFFGREILGVCQEVNETILVALLFINSLAFLLLFLAQILISC
LRPSRAEAVQVILLFTAGCRYYQYVFRPVMLTKPVMITIMSHILYVITFS
LIFVEKKRALNFKTPYDAYFKKTTIFVKTWIFDTAHAMRNMFSDSIPYGS
RTFTGSGFGSRSSFCISMSNVDINSESHEQIATDTVEPLESKHTPRSEPS
TEYPGQNRWYPVNRSASLIRKTFTACQQYGDRMNLGATGSIKQGRAPKKS
SSYSDDSVAYQSCME*
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spliced messenger RNA

>Gvermi11506.t1 ID=Gvermi11506.t1|Name=Gvermi11506.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1998bp|location=Sequence derived from alignment at ScGOVlb_3404:629848..631845- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGTAAGATTTTTCACCATCATTCTCTTCGCCACCCTGCTTATCAA
GCCCTGCACTTCCACTCCACACAGAGCCGAAACATCCGGTGTAGTAGACC
AACCCGTTACGCCGCACTCGAACACGCATCACAGCAACAAACTATCTGCA
TTTGACCATCAGCGAGATAAAAGTGGAGAGTTGGAAGTGGACGAAGAAAG
CACAAGAGGTCAACACTTTCGACAACATACTGTCGTCACTAAACTTATGC
AACCGAAAAGTAACCCAAGAGGACGAAGTTCAAACGCAAAAGTGGCTACA
ACCGGAAGGGAGAATGGAAGTTCTACTGCTGCCGTCCATGAAGATTTGAC
AGAAAGCTATGGAAACCCGACTACTTCGCACGCGGGCGTTGATACATCGT
CAGGTTTCCCAATTAGCTATGACGACGAACAGCTGGAGCACGGGACACAG
AACAACACAGAAGATGGAAGTCACCATCACCAGCATCATAATCACGAACA
GGCCCTAGATATTGAAGAACAAAAACTTCGAGTTGCGACGATTAAACTCG
TTAAGTGGCTCAGAAATCGCCTCAGAAAACGTTTGAAAGATGTTGCTCAC
TTGGAAAACGACGTGACCACTGAAAACGAGCTTCTCAAAAACTTGAGGGA
AGAGATCGAAGATGCATCTCGTAAGAGAGAGGATGAGATCAAGCAAAAAC
TGCAGACACGAAAGGAGTTGTCTGACTTTCGACGTCACTCAAACCCTCCG
GATGTCGGCATAAAACGGGTTCAGAGTCAAACAAAGGCATTGTCAGACCA
GCTTGACAGGCTCAAAGAAGCATATGAATCTATGACCGCGAGACACAGGG
ATCTCGAGAACAAGCTTAGGTCCGCTGGATTTACTCACTGGTTAGAAGCA
CGAGGGAGGGAGTATTTCCCAGACACTGCTGTCGGTGTCCTCTCCAAGTC
AGCCCAGATTCTGGGTCCAGTTACCCATGGATTTCAAAGAGCTTTGTTAT
TTGACGACCGTCTTTCCACAGAGATGGAGCAAATCATTCCAGGGTCGGGA
GAAAGCATTCTGGGAAAAATTGTATGGGACATCAGCATGATGGTTCCATT
CATACCCTTCCTGATGTTGCTTCGTTTCGCGAATGGTATGATTCGCTGTC
TTTCAGTTTATGACATAGTGCTTTGCGGGTCCGGCCTCTTTACAGCCGAA
AGCTTCCTTTGTTTGCTTATGTCAGTATTTTTTGGTCGAGAAATTCTAGG
GGTATGCCAAGAAGTCAATGAAACAATTCTCGTCGCACTTTTGTTCATCA
ACAGTTTGGCATTTCTCCTCTTGTTCTTGGCGCAGATTTTGATATCCTGT
CTTCGACCCTCTCGAGCGGAGGCTGTACAAGTGATTCTGCTGTTTACAGC
CGGGTGTCGCTACTATCAATATGTGTTTCGCCCAGTAATGCTGACCAAGC
CAGTTATGATCACGATTATGAGTCACATTCTCTACGTTATCACATTCTCT
CTTATATTCGTAGAAAAGAAACGAGCTTTGAACTTCAAGACGCCATATGA
TGCATACTTCAAGAAGACAACGATATTTGTTAAGACTTGGATATTTGACA
CTGCGCATGCAATGCGAAACATGTTCTCTGACAGTATACCGTATGGCTCT
CGTACCTTTACCGGAAGTGGATTCGGAAGCAGATCATCGTTCTGTATATC
AATGTCGAACGTCGACATCAACTCTGAAAGTCACGAACAAATAGCAACCG
ACACAGTGGAACCATTGGAATCCAAGCACACTCCTCGCTCTGAACCAAGC
ACTGAGTATCCCGGGCAAAACAGATGGTATCCCGTGAATCGATCGGCCAG
TCTAATAAGGAAAACATTCACTGCCTGTCAACAATATGGCGATCGCATGA
ACTTGGGTGCAACTGGATCCATCAAACAGGGAAGGGCGCCGAAAAAGTCA
AGCTCATACTCAGATGACTCAGTGGCATATCAGTCTTGCATGGAATAG
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protein sequence of Gvermi11506.t1

>Gvermi11506.t1 ID=Gvermi11506.t1|Name=Gvermi11506.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=666bp
MNVRFFTIILFATLLIKPCTSTPHRAETSGVVDQPVTPHSNTHHSNKLSA
FDHQRDKSGELEVDEESTRGQHFRQHTVVTKLMQPKSNPRGRSSNAKVAT
TGRENGSSTAAVHEDLTESYGNPTTSHAGVDTSSGFPISYDDEQLEHGTQ
NNTEDGSHHHQHHNHEQALDIEEQKLRVATIKLVKWLRNRLRKRLKDVAH
LENDVTTENELLKNLREEIEDASRKREDEIKQKLQTRKELSDFRRHSNPP
DVGIKRVQSQTKALSDQLDRLKEAYESMTARHRDLENKLRSAGFTHWLEA
RGREYFPDTAVGVLSKSAQILGPVTHGFQRALLFDDRLSTEMEQIIPGSG
ESILGKIVWDISMMVPFIPFLMLLRFANGMIRCLSVYDIVLCGSGLFTAE
SFLCLLMSVFFGREILGVCQEVNETILVALLFINSLAFLLLFLAQILISC
LRPSRAEAVQVILLFTAGCRYYQYVFRPVMLTKPVMITIMSHILYVITFS
LIFVEKKRALNFKTPYDAYFKKTTIFVKTWIFDTAHAMRNMFSDSIPYGS
RTFTGSGFGSRSSFCISMSNVDINSESHEQIATDTVEPLESKHTPRSEPS
TEYPGQNRWYPVNRSASLIRKTFTACQQYGDRMNLGATGSIKQGRAPKKS
SSYSDDSVAYQSCME*
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mRNA from alignment at ScGOVlb_3404:629848..631845-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11506.t1 ID=Gvermi11506.t1|Name=Gvermi11506.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1998bp|location=Sequence derived from alignment at ScGOVlb_3404:629848..631845- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATGTAAGATTTTTCACCATCATTCTCTTCGCCACCCTGCTTATCAA
GCCCTGCACTTCCACTCCACACAGAGCCGAAACATCCGGTGTAGTAGACC
AACCCGTTACGCCGCACTCGAACACGCATCACAGCAACAAACTATCTGCA
TTTGACCATCAGCGAGATAAAAGTGGAGAGTTGGAAGTGGACGAAGAAAG
CACAAGAGGTCAACACTTTCGACAACATACTGTCGTCACTAAACTTATGC
AACCGAAAAGTAACCCAAGAGGACGAAGTTCAAACGCAAAAGTGGCTACA
ACCGGAAGGGAGAATGGAAGTTCTACTGCTGCCGTCCATGAAGATTTGAC
AGAAAGCTATGGAAACCCGACTACTTCGCACGCGGGCGTTGATACATCGT
CAGGTTTCCCAATTAGCTATGACGACGAACAGCTGGAGCACGGGACACAG
AACAACACAGAAGATGGAAGTCACCATCACCAGCATCATAATCACGAACA
GGCCCTAGATATTGAAGAACAAAAACTTCGAGTTGCGACGATTAAACTCG
TTAAGTGGCTCAGAAATCGCCTCAGAAAACGTTTGAAAGATGTTGCTCAC
TTGGAAAACGACGTGACCACTGAAAACGAGCTTCTCAAAAACTTGAGGGA
AGAGATCGAAGATGCATCTCGTAAGAGAGAGGATGAGATCAAGCAAAAAC
TGCAGACACGAAAGGAGTTGTCTGACTTTCGACGTCACTCAAACCCTCCG
GATGTCGGCATAAAACGGGTTCAGAGTCAAACAAAGGCATTGTCAGACCA
GCTTGACAGGCTCAAAGAAGCATATGAATCTATGACCGCGAGACACAGGG
ATCTCGAGAACAAGCTTAGGTCCGCTGGATTTACTCACTGGTTAGAAGCA
CGAGGGAGGGAGTATTTCCCAGACACTGCTGTCGGTGTCCTCTCCAAGTC
AGCCCAGATTCTGGGTCCAGTTACCCATGGATTTCAAAGAGCTTTGTTAT
TTGACGACCGTCTTTCCACAGAGATGGAGCAAATCATTCCAGGGTCGGGA
GAAAGCATTCTGGGAAAAATTGTATGGGACATCAGCATGATGGTTCCATT
CATACCCTTCCTGATGTTGCTTCGTTTCGCGAATGGTATGATTCGCTGTC
TTTCAGTTTATGACATAGTGCTTTGCGGGTCCGGCCTCTTTACAGCCGAA
AGCTTCCTTTGTTTGCTTATGTCAGTATTTTTTGGTCGAGAAATTCTAGG
GGTATGCCAAGAAGTCAATGAAACAATTCTCGTCGCACTTTTGTTCATCA
ACAGTTTGGCATTTCTCCTCTTGTTCTTGGCGCAGATTTTGATATCCTGT
CTTCGACCCTCTCGAGCGGAGGCTGTACAAGTGATTCTGCTGTTTACAGC
CGGGTGTCGCTACTATCAATATGTGTTTCGCCCAGTAATGCTGACCAAGC
CAGTTATGATCACGATTATGAGTCACATTCTCTACGTTATCACATTCTCT
CTTATATTCGTAGAAAAGAAACGAGCTTTGAACTTCAAGACGCCATATGA
TGCATACTTCAAGAAGACAACGATATTTGTTAAGACTTGGATATTTGACA
CTGCGCATGCAATGCGAAACATGTTCTCTGACAGTATACCGTATGGCTCT
CGTACCTTTACCGGAAGTGGATTCGGAAGCAGATCATCGTTCTGTATATC
AATGTCGAACGTCGACATCAACTCTGAAAGTCACGAACAAATAGCAACCG
ACACAGTGGAACCATTGGAATCCAAGCACACTCCTCGCTCTGAACCAAGC
ACTGAGTATCCCGGGCAAAACAGATGGTATCCCGTGAATCGATCGGCCAG
TCTAATAAGGAAAACATTCACTGCCTGTCAACAATATGGCGATCGCATGA
ACTTGGGTGCAACTGGATCCATCAAACAGGGAAGGGCGCCGAAAAAGTCA
AGCTCATACTCAGATGACTCAGTGGCATATCAGTCTTGCATGGAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:629848..631845-

>Gvermi11506.t1 ID=Gvermi11506.t1|Name=Gvermi11506.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1998bp|location=Sequence derived from alignment at ScGOVlb_3404:629848..631845- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAATGTAAGATTTTTCACCATCATTCTCTTCGCCACCCTGCTTATCAA
GCCCTGCACTTCCACTCCACACAGAGCCGAAACATCCGGTGTAGTAGACC
AACCCGTTACGCCGCACTCGAACACGCATCACAGCAACAAACTATCTGCA
TTTGACCATCAGCGAGATAAAAGTGGAGAGTTGGAAGTGGACGAAGAAAG
CACAAGAGGTCAACACTTTCGACAACATACTGTCGTCACTAAACTTATGC
AACCGAAAAGTAACCCAAGAGGACGAAGTTCAAACGCAAAAGTGGCTACA
ACCGGAAGGGAGAATGGAAGTTCTACTGCTGCCGTCCATGAAGATTTGAC
AGAAAGCTATGGAAACCCGACTACTTCGCACGCGGGCGTTGATACATCGT
CAGGTTTCCCAATTAGCTATGACGACGAACAGCTGGAGCACGGGACACAG
AACAACACAGAAGATGGAAGTCACCATCACCAGCATCATAATCACGAACA
GGCCCTAGATATTGAAGAACAAAAACTTCGAGTTGCGACGATTAAACTCG
TTAAGTGGCTCAGAAATCGCCTCAGAAAACGTTTGAAAGATGTTGCTCAC
TTGGAAAACGACGTGACCACTGAAAACGAGCTTCTCAAAAACTTGAGGGA
AGAGATCGAAGATGCATCTCGTAAGAGAGAGGATGAGATCAAGCAAAAAC
TGCAGACACGAAAGGAGTTGTCTGACTTTCGACGTCACTCAAACCCTCCG
GATGTCGGCATAAAACGGGTTCAGAGTCAAACAAAGGCATTGTCAGACCA
GCTTGACAGGCTCAAAGAAGCATATGAATCTATGACCGCGAGACACAGGG
ATCTCGAGAACAAGCTTAGGTCCGCTGGATTTACTCACTGGTTAGAAGCA
CGAGGGAGGGAGTATTTCCCAGACACTGCTGTCGGTGTCCTCTCCAAGTC
AGCCCAGATTCTGGGTCCAGTTACCCATGGATTTCAAAGAGCTTTGTTAT
TTGACGACCGTCTTTCCACAGAGATGGAGCAAATCATTCCAGGGTCGGGA
GAAAGCATTCTGGGAAAAATTGTATGGGACATCAGCATGATGGTTCCATT
CATACCCTTCCTGATGTTGCTTCGTTTCGCGAATGGTATGATTCGCTGTC
TTTCAGTTTATGACATAGTGCTTTGCGGGTCCGGCCTCTTTACAGCCGAA
AGCTTCCTTTGTTTGCTTATGTCAGTATTTTTTGGTCGAGAAATTCTAGG
GGTATGCCAAGAAGTCAATGAAACAATTCTCGTCGCACTTTTGTTCATCA
ACAGTTTGGCATTTCTCCTCTTGTTCTTGGCGCAGATTTTGATATCCTGT
CTTCGACCCTCTCGAGCGGAGGCTGTACAAGTGATTCTGCTGTTTACAGC
CGGGTGTCGCTACTATCAATATGTGTTTCGCCCAGTAATGCTGACCAAGC
CAGTTATGATCACGATTATGAGTCACATTCTCTACGTTATCACATTCTCT
CTTATATTCGTAGAAAAGAAACGAGCTTTGAACTTCAAGACGCCATATGA
TGCATACTTCAAGAAGACAACGATATTTGTTAAGACTTGGATATTTGACA
CTGCGCATGCAATGCGAAACATGTTCTCTGACAGTATACCGTATGGCTCT
CGTACCTTTACCGGAAGTGGATTCGGAAGCAGATCATCGTTCTGTATATC
AATGTCGAACGTCGACATCAACTCTGAAAGTCACGAACAAATAGCAACCG
ACACAGTGGAACCATTGGAATCCAAGCACACTCCTCGCTCTGAACCAAGC
ACTGAGTATCCCGGGCAAAACAGATGGTATCCCGTGAATCGATCGGCCAG
TCTAATAAGGAAAACATTCACTGCCTGTCAACAATATGGCGATCGCATGA
ACTTGGGTGCAACTGGATCCATCAAACAGGGAAGGGCGCCGAAAAAGTCA
AGCTCATACTCAGATGACTCAGTGGCATATCAGTCTTGCATGGAATAG
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