Gvermi11505.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11505.t1
Unique NameGvermi11505.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length734
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:622947..625148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707714.1
PFAMsPH,Pkinase
Max annot lvl2759|Eukaryota
KEGG koko:K04456,ko:K13303
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04012,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04140,ko04150,ko04151,ko04152,ko04210,ko04211,ko04212,ko04213,ko04218,ko04261,ko04370,ko04371,ko04380,ko04510,ko04550,ko04611,ko04620,ko04630,ko04660,ko04662,ko04664,ko04666,ko04668,ko04722,ko04725,ko04728,ko04910,ko04914,ko04915,ko04917,ko04919,ko04920,ko04922,ko04923,ko04926,ko04931,ko04932,ko04933,ko04973,ko05142,ko05145,ko05152,ko05160,ko05161,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05218,ko05220,ko05221,ko05222,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,ko05418,map01521,map01522,map01524,map04010,map04012,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04140,map04150,map04151,map04152,map04210,map04211,map04212,map04213,map04218,map04261,map04370,map04371,map04380,map04510,map04550,map04611,map04620,map04630,map04660,map04662,map04664,map04666,map04668,map04722,map04725,map04728,map04910,map04914,map04915,map04917,map04919,map04920,map04922,map04923,map04926,map04931,map04932,map04933,map04973,map05142,map05145,map05152,map05160,map05161,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05218,map05220,map05221,map05222,map05223,map05224,map05225,map05226,map05230,map05231,map05418
KEGG ModuleM00676
Evalue3.17e-62
EggNOG OGsKOG0598@1|root,KOG0598@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11505Gvermi11505Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 622947..625148 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11505.t1.start1Gvermi11505.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 622947..622949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11505.t1.CDS1Gvermi11505.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 622947..625148 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11505.t1.exon1Gvermi11505.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 622947..625148 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11505.t1.stop1Gvermi11505.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 625146..625148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11505.t1Gvermi11505.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 622947..625148 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11505.t1 ID=Gvermi11505.t1|Name=Gvermi11505.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=734bp
MSRGPREDWRRASGSLNKRSRRAAIFDAAARSADSFSSVAGRWSLSRRRR
SRAASDHKRLRKRRSFHASQRALDDGTPSLHTNTPFVIATTADEHRAHRN
HPVSSRLPSYGSDGLSAISLRDPDSRYAHPALRPTFDALRLLRKIPDVMA
GWVQIKCPTGPGRLRWSTWTMFWAELRGGYVLLTRDHNSLAAMSDATCQN
PVDYIFGAAHCHISRIISRSGAVRLRLSRTASRRRNDSATATSSGIADDD
DLNYRPVESDARLSERSGKSSGSEKRTFGSTMMRIMSGKMKAKPSTSELA
ISEEISAELVMKIPSAPEADKWEWALRNTTQAYESKRLGDFQLIDVLGAG
AFGRVYLVHDTVKGEYLALKVLQKSLVFRDRLHFESAVNERLTLELVRGK
PFMAQLRYAFQTASCLYLVTDFYEGGDLFSFLRAHHKDVKESQAIRIIAE
VILALQSMHDMGIVYRDLKPENVLLDYEGHVRLADLGLAKLLNRDNDYLT
KTICGSLSYAAPEMLSEKQYGIAFDMWTLGVFIYQVLTGEMPFETENRSR
QEILEDQRKAEIPVNGLSDEGYSLVCALLRPNPLRRPTCPELRDYPIFAN
IDWDELMRKRPHPNSVKDVMEKISLQARSREKEGPTTENVGGESGMYLLR
NFDPGEWSDMSFSDVSDGCSTASFFKPNFNVIDELPNMTRWIPGWSFTAD
NVVPLSKPQLAVPQLGRKPVSRNARRLSEKAYR*
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spliced messenger RNA

>Gvermi11505.t1 ID=Gvermi11505.t1|Name=Gvermi11505.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2202bp|location=Sequence derived from alignment at ScGOVlb_3404:622947..625148+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGAGGTCCCCGCGAAGACTGGCGTCGCGCCTCCGGCTCCCTTAA
CAAGCGCTCccgccgcgccgccatcttcgacgccgccgcgcgcagcgccg
actccttctcctccgtcgctggtcgttggtccctgtcgcgtcgccgtcgc
tCCCGCGCCGCTTCCGACCACAAACGCCTTCGCAAGCGCCGTTCGTTCCA
CGCCTCCCAGAGAGCTCTCGATGACGGCACCCCGTCGCTGCACACCAACA
CCCCTTTCGTCATCGCAACCACCGCTGACGAGCACCGCGCCCACCGCAAC
CACCCCGTCTCGTCCAGGCTCCCGTCCTATGGCAGCGACGGCCTCTCCGC
CATCAGTCTGCGCGACCCGGACTCCCGCTATGCCCACCCCGCCCTCAGAC
CCACCTTTGACGCCTTGCGTCTTCTCCGCAAGATCCCCGACGTCATGGCC
GGCTGGGTGCAAATCAAGTGCCCGACCGGCCCCGGCCGTCTCAGGTGGTC
GACTTGGACCATGTTCTGGGCCGAGCTGCGTGGGGGCTACGTCCTGCTCA
CGCGCGACCACAACTCGCTAGCTGCCATGTCCGACGCCACCTGCCAGAAC
CCCGTCGACTACATCTTTGGCGCCGCCCACTGCCACATTTCGCGCATCAT
CTCGCGCTCGGGcgccgtgcgcctgcgcctctcgcgcaccgcctcccgcc
gtcgcaacgactccgccacagccACAAGTTCGGGAATCGCCGACGATGAT
GACCTCAACTACCGTCCCGTCGAGTCGGACGCTCGCCTTTCGGAGCGATC
TGGAAAGAGCAGTGGCTCGGAGAAGCGCACTTTCGGATCGACCATGATGA
GGATCATGAGCGGCAAGATGAAGGCCAAGCCTTCCACTTCGGAGCTTGCC
ATCTCCGAAGAGATCAGCGCCGAGCTCGTCATGAAGATCCCTAGCGCCCC
GGAGGCCGACAAATGGGAATGGGCTTTGAGAAACACCACCCAGGCGTATG
AATCGAAGCGTCTTGGCGATTTTCAGCTCATTGACGTTCTCGGCGCTGGC
GCCTTTGGCCGTGTGTACCTGGTCCATGATACTGTCAAGGGAGAGTACCT
CGCGCTCAAGGTGCTGCAGAAGAGCTTGGTTTTCAGGGATAGGCTCCATT
TTGAAAGTGCGGTTAATGAGCGTCTCACGTTAGAGCTTGTGCGGGGAAAA
CCGTTTATGGCTCAGCTACGATACGCGTTTCAGACTGCGTCATGCCTGTA
TCTTGTCACAGACTTCTACGAGGGCGGCGATCTGTTTTCTTTTCTACGAG
CGCATCATAAGGATGTGAAAGAGAGTCAGGCAATTCGCATCATTGCAGAA
GTTATTTTGGCTCTACAGAGTATGCACGACATGGGGATCGTGTACAGAGA
TCTCAAGCCGGAAAATGTGCTGCTGGATTACGAGGGACACGTTCGCTTGG
CCGATCTGGGGCTGGCAAAATTACTTAACCGCGACAACGACTACTTGACC
AAGACTATTTGCGGCTCACTGTCTTATGCCGCCCCGGAGATGTTGAGCGA
GAAGCAGTATGGCATTGCGTTTGATATGTGGACTTTGGGCGTCTTCATAT
ATCAGGTGCTAACTGGCGAAATGCCGTTTGAGACGGAAAATAGGAGCCGC
CAGGAAATACTGGAAGATCAACGAAAGGCTGAAATTCCTGTGAATGGTCT
GTCAGACGAAGGCTATTCATTGGTTTGCGCGCTGCTGCGCCCTAACCCGC
TCCGACGTCCAACGTGCCCAGAGCTGAGAGACTACCCGATTTTTGCAAAT
ATCGATTGGGATGAGCTCATGCGCAAGCGACCACACCCAAATTCAGTGAA
GGATGTTATGGAAAAAATATCGTTGCAGGCGAGGAGTCGGGAGAAGGAGG
GACCCACGACGGAGAACGTTGGGGGCGAAAGCGGTATGTACTTGCTGCGC
AACTTCGACCCCGGGGAGTGGTCCGACATGTCTTTCAGTGATGTGTCGGA
TGGTTGTTCTACGGCAAGCTTTTTCAAACCGAATTTCAACGTCATCGACG
AGTTGCCAAACATGACCAGATGGATTCCCGGTTGGAGTTTTACTGCTGAC
AATGTCGTGCCCTTGTCGAAACCGCAGCTAGCCGTGCCGCAATTAGGCAG
GAAGCCTGTGTCTCGGAACGCGCGACGCTTATCGGAAAAAGCATATCGTT
AG
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protein sequence of Gvermi11505.t1

>Gvermi11505.t1 ID=Gvermi11505.t1|Name=Gvermi11505.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=734bp
MSRGPREDWRRASGSLNKRSRRAAIFDAAARSADSFSSVAGRWSLSRRRR
SRAASDHKRLRKRRSFHASQRALDDGTPSLHTNTPFVIATTADEHRAHRN
HPVSSRLPSYGSDGLSAISLRDPDSRYAHPALRPTFDALRLLRKIPDVMA
GWVQIKCPTGPGRLRWSTWTMFWAELRGGYVLLTRDHNSLAAMSDATCQN
PVDYIFGAAHCHISRIISRSGAVRLRLSRTASRRRNDSATATSSGIADDD
DLNYRPVESDARLSERSGKSSGSEKRTFGSTMMRIMSGKMKAKPSTSELA
ISEEISAELVMKIPSAPEADKWEWALRNTTQAYESKRLGDFQLIDVLGAG
AFGRVYLVHDTVKGEYLALKVLQKSLVFRDRLHFESAVNERLTLELVRGK
PFMAQLRYAFQTASCLYLVTDFYEGGDLFSFLRAHHKDVKESQAIRIIAE
VILALQSMHDMGIVYRDLKPENVLLDYEGHVRLADLGLAKLLNRDNDYLT
KTICGSLSYAAPEMLSEKQYGIAFDMWTLGVFIYQVLTGEMPFETENRSR
QEILEDQRKAEIPVNGLSDEGYSLVCALLRPNPLRRPTCPELRDYPIFAN
IDWDELMRKRPHPNSVKDVMEKISLQARSREKEGPTTENVGGESGMYLLR
NFDPGEWSDMSFSDVSDGCSTASFFKPNFNVIDELPNMTRWIPGWSFTAD
NVVPLSKPQLAVPQLGRKPVSRNARRLSEKAYR*
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mRNA from alignment at ScGOVlb_3404:622947..625148+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11505.t1 ID=Gvermi11505.t1|Name=Gvermi11505.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2202bp|location=Sequence derived from alignment at ScGOVlb_3404:622947..625148+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCGAGGTCCCCGCGAAGACTGGCGTCGCGCCTCCGGCTCCCTTAA CAAGCGCTCccgccgcgccgccatcttcgacgccgccgcgcgcagcgccg actccttctcctccgtcgctggtcgttggtccctgtcgcgtcgccgtcgc tCCCGCGCCGCTTCCGACCACAAACGCCTTCGCAAGCGCCGTTCGTTCCA CGCCTCCCAGAGAGCTCTCGATGACGGCACCCCGTCGCTGCACACCAACA CCCCTTTCGTCATCGCAACCACCGCTGACGAGCACCGCGCCCACCGCAAC CACCCCGTCTCGTCCAGGCTCCCGTCCTATGGCAGCGACGGCCTCTCCGC CATCAGTCTGCGCGACCCGGACTCCCGCTATGCCCACCCCGCCCTCAGAC CCACCTTTGACGCCTTGCGTCTTCTCCGCAAGATCCCCGACGTCATGGCC GGCTGGGTGCAAATCAAGTGCCCGACCGGCCCCGGCCGTCTCAGGTGGTC GACTTGGACCATGTTCTGGGCCGAGCTGCGTGGGGGCTACGTCCTGCTCA CGCGCGACCACAACTCGCTAGCTGCCATGTCCGACGCCACCTGCCAGAAC CCCGTCGACTACATCTTTGGCGCCGCCCACTGCCACATTTCGCGCATCAT CTCGCGCTCGGGcgccgtgcgcctgcgcctctcgcgcaccgcctcccgcc gtcgcaacgactccgccacagccACAAGTTCGGGAATCGCCGACGATGAT GACCTCAACTACCGTCCCGTCGAGTCGGACGCTCGCCTTTCGGAGCGATC TGGAAAGAGCAGTGGCTCGGAGAAGCGCACTTTCGGATCGACCATGATGA GGATCATGAGCGGCAAGATGAAGGCCAAGCCTTCCACTTCGGAGCTTGCC ATCTCCGAAGAGATCAGCGCCGAGCTCGTCATGAAGATCCCTAGCGCCCC GGAGGCCGACAAATGGGAATGGGCTTTGAGAAACACCACCCAGGCGTATG AATCGAAGCGTCTTGGCGATTTTCAGCTCATTGACGTTCTCGGCGCTGGC GCCTTTGGCCGTGTGTACCTGGTCCATGATACTGTCAAGGGAGAGTACCT CGCGCTCAAGGTGCTGCAGAAGAGCTTGGTTTTCAGGGATAGGCTCCATT TTGAAAGTGCGGTTAATGAGCGTCTCACGTTAGAGCTTGTGCGGGGAAAA CCGTTTATGGCTCAGCTACGATACGCGTTTCAGACTGCGTCATGCCTGTA TCTTGTCACAGACTTCTACGAGGGCGGCGATCTGTTTTCTTTTCTACGAG CGCATCATAAGGATGTGAAAGAGAGTCAGGCAATTCGCATCATTGCAGAA GTTATTTTGGCTCTACAGAGTATGCACGACATGGGGATCGTGTACAGAGA TCTCAAGCCGGAAAATGTGCTGCTGGATTACGAGGGACACGTTCGCTTGG CCGATCTGGGGCTGGCAAAATTACTTAACCGCGACAACGACTACTTGACC AAGACTATTTGCGGCTCACTGTCTTATGCCGCCCCGGAGATGTTGAGCGA GAAGCAGTATGGCATTGCGTTTGATATGTGGACTTTGGGCGTCTTCATAT ATCAGGTGCTAACTGGCGAAATGCCGTTTGAGACGGAAAATAGGAGCCGC CAGGAAATACTGGAAGATCAACGAAAGGCTGAAATTCCTGTGAATGGTCT GTCAGACGAAGGCTATTCATTGGTTTGCGCGCTGCTGCGCCCTAACCCGC TCCGACGTCCAACGTGCCCAGAGCTGAGAGACTACCCGATTTTTGCAAAT ATCGATTGGGATGAGCTCATGCGCAAGCGACCACACCCAAATTCAGTGAA GGATGTTATGGAAAAAATATCGTTGCAGGCGAGGAGTCGGGAGAAGGAGG GACCCACGACGGAGAACGTTGGGGGCGAAAGCGGTATGTACTTGCTGCGC AACTTCGACCCCGGGGAGTGGTCCGACATGTCTTTCAGTGATGTGTCGGA TGGTTGTTCTACGGCAAGCTTTTTCAAACCGAATTTCAACGTCATCGACG AGTTGCCAAACATGACCAGATGGATTCCCGGTTGGAGTTTTACTGCTGAC AATGTCGTGCCCTTGTCGAAACCGCAGCTAGCCGTGCCGCAATTAGGCAG GAAGCCTGTGTCTCGGAACGCGCGACGCTTATCGGAAAAAGCATATCGTT AG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:622947..625148+

>Gvermi11505.t1 ID=Gvermi11505.t1|Name=Gvermi11505.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2202bp|location=Sequence derived from alignment at ScGOVlb_3404:622947..625148+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCGAGGTCCCCGCGAAGACTGGCGTCGCGCCTCCGGCTCCCTTAA
CAAGCGCTCccgccgcgccgccatcttcgacgccgccgcgcgcagcgccg
actccttctcctccgtcgctggtcgttggtccctgtcgcgtcgccgtcgc
tCCCGCGCCGCTTCCGACCACAAACGCCTTCGCAAGCGCCGTTCGTTCCA
CGCCTCCCAGAGAGCTCTCGATGACGGCACCCCGTCGCTGCACACCAACA
CCCCTTTCGTCATCGCAACCACCGCTGACGAGCACCGCGCCCACCGCAAC
CACCCCGTCTCGTCCAGGCTCCCGTCCTATGGCAGCGACGGCCTCTCCGC
CATCAGTCTGCGCGACCCGGACTCCCGCTATGCCCACCCCGCCCTCAGAC
CCACCTTTGACGCCTTGCGTCTTCTCCGCAAGATCCCCGACGTCATGGCC
GGCTGGGTGCAAATCAAGTGCCCGACCGGCCCCGGCCGTCTCAGGTGGTC
GACTTGGACCATGTTCTGGGCCGAGCTGCGTGGGGGCTACGTCCTGCTCA
CGCGCGACCACAACTCGCTAGCTGCCATGTCCGACGCCACCTGCCAGAAC
CCCGTCGACTACATCTTTGGCGCCGCCCACTGCCACATTTCGCGCATCAT
CTCGCGCTCGGGcgccgtgcgcctgcgcctctcgcgcaccgcctcccgcc
gtcgcaacgactccgccacagccACAAGTTCGGGAATCGCCGACGATGAT
GACCTCAACTACCGTCCCGTCGAGTCGGACGCTCGCCTTTCGGAGCGATC
TGGAAAGAGCAGTGGCTCGGAGAAGCGCACTTTCGGATCGACCATGATGA
GGATCATGAGCGGCAAGATGAAGGCCAAGCCTTCCACTTCGGAGCTTGCC
ATCTCCGAAGAGATCAGCGCCGAGCTCGTCATGAAGATCCCTAGCGCCCC
GGAGGCCGACAAATGGGAATGGGCTTTGAGAAACACCACCCAGGCGTATG
AATCGAAGCGTCTTGGCGATTTTCAGCTCATTGACGTTCTCGGCGCTGGC
GCCTTTGGCCGTGTGTACCTGGTCCATGATACTGTCAAGGGAGAGTACCT
CGCGCTCAAGGTGCTGCAGAAGAGCTTGGTTTTCAGGGATAGGCTCCATT
TTGAAAGTGCGGTTAATGAGCGTCTCACGTTAGAGCTTGTGCGGGGAAAA
CCGTTTATGGCTCAGCTACGATACGCGTTTCAGACTGCGTCATGCCTGTA
TCTTGTCACAGACTTCTACGAGGGCGGCGATCTGTTTTCTTTTCTACGAG
CGCATCATAAGGATGTGAAAGAGAGTCAGGCAATTCGCATCATTGCAGAA
GTTATTTTGGCTCTACAGAGTATGCACGACATGGGGATCGTGTACAGAGA
TCTCAAGCCGGAAAATGTGCTGCTGGATTACGAGGGACACGTTCGCTTGG
CCGATCTGGGGCTGGCAAAATTACTTAACCGCGACAACGACTACTTGACC
AAGACTATTTGCGGCTCACTGTCTTATGCCGCCCCGGAGATGTTGAGCGA
GAAGCAGTATGGCATTGCGTTTGATATGTGGACTTTGGGCGTCTTCATAT
ATCAGGTGCTAACTGGCGAAATGCCGTTTGAGACGGAAAATAGGAGCCGC
CAGGAAATACTGGAAGATCAACGAAAGGCTGAAATTCCTGTGAATGGTCT
GTCAGACGAAGGCTATTCATTGGTTTGCGCGCTGCTGCGCCCTAACCCGC
TCCGACGTCCAACGTGCCCAGAGCTGAGAGACTACCCGATTTTTGCAAAT
ATCGATTGGGATGAGCTCATGCGCAAGCGACCACACCCAAATTCAGTGAA
GGATGTTATGGAAAAAATATCGTTGCAGGCGAGGAGTCGGGAGAAGGAGG
GACCCACGACGGAGAACGTTGGGGGCGAAAGCGGTATGTACTTGCTGCGC
AACTTCGACCCCGGGGAGTGGTCCGACATGTCTTTCAGTGATGTGTCGGA
TGGTTGTTCTACGGCAAGCTTTTTCAAACCGAATTTCAACGTCATCGACG
AGTTGCCAAACATGACCAGATGGATTCCCGGTTGGAGTTTTACTGCTGAC
AATGTCGTGCCCTTGTCGAAACCGCAGCTAGCCGTGCCGCAATTAGGCAG
GAAGCCTGTGTCTCGGAACGCGCGACGCTTATCGGAAAAAGCATATCGTT
AG
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