Gvermi11494.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11494.t1
Unique NameGvermi11494.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:565777..566436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1906.SFRA_06005
PFAMsPAP2
Max annot lvl201174|Actinobacteria
Evalue2.57e-05
EggNOG OGsCOG2931@1|root,COG2931@2|Bacteria,2GK1B@201174|Actinobacteria
Descriptioncalcium- and calmodulin-responsive adenylate cyclase activity
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11494Gvermi11494Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 565777..566436 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11494.t1.stop1Gvermi11494.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 565777..565779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11494.t1.CDS1Gvermi11494.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 565777..566436 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11494.t1.exon1Gvermi11494.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 565777..566436 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11494.t1.start1Gvermi11494.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 566434..566436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11494.t1Gvermi11494.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 565777..566436 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11494.t1 ID=Gvermi11494.t1|Name=Gvermi11494.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=220bp
MPSLADLLTVMDDPSNELLAAFFPPSIFNVQTPLAICIDPISAIVQYQIF
SACPPVALSFFADNQYVPNRFCTDHTHNALVQARMVQRLMGFEFPIDVKP
SHNFLISTALHPCDRSTNVSTPVTWANVAANRLIHFFANGGCNSQGQLSE
RDYGQQFQHYTSHPPVNPPRLAPKQLAFPLRWQPLTVALDHRRLFGSLQH
VVPQIATHAKPHVLSRAQF*
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spliced messenger RNA

>Gvermi11494.t1 ID=Gvermi11494.t1|Name=Gvermi11494.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=660bp|location=Sequence derived from alignment at ScGOVlb_3404:565777..566436- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCATCTTTGGCCGATCTGCTCACCGTCATGGACGATCCTTCAAACGA
ACTTTTGGCCGCATTCTTCCCGCCTTCAATCTTCAACGTCCAGACGCCCC
TAGCCATTTGCATCGACCCCATCAGCGCCATCGTTCAGTACCAAATCTTT
TCTGCTTGCCCTCCAGTCGCGCTCTCATTCTTCGCAGACAACCAATACGT
TCCGAACCGCTTTTGCACTGACCATACTCACAACGCTCTGGTTCAGGCCC
GCATGGTTCAGCGACTCATGGGATTCGAGTTTCCCATCGATGTCAAACCG
TCGCACAACTTCCTTATCAGCACTGCATTACATCCATGTGATCGCTCCAC
CAATGTTTCCACCCCGGTCACATGGGCCAACGTGGCCGCCAATCGTTTGA
TCCACTTCTTCGCGAACGGTGGCTGCAATTCGCAAGGCCAACTTTCGGAG
CGAGACTACGGGCAGCAGTTTCAGCATTATACTTCTCATCCTCCCGTCAA
TCCGCCCCGCCTTGCCCCGAAACAGCTCGCCTTCCCCCTTCGCTGGCAGC
CGCTCACTGTCGCTTTGGACCACCGTCGTCTGTTTGGCAGCCTGCAACAT
GTCGTCCCTCAGATCGCCACGCATGCCAAGCCGCATGTTCTCTCCCGTGC
ACAGTTTTAG
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protein sequence of Gvermi11494.t1

>Gvermi11494.t1 ID=Gvermi11494.t1|Name=Gvermi11494.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=220bp
MPSLADLLTVMDDPSNELLAAFFPPSIFNVQTPLAICIDPISAIVQYQIF
SACPPVALSFFADNQYVPNRFCTDHTHNALVQARMVQRLMGFEFPIDVKP
SHNFLISTALHPCDRSTNVSTPVTWANVAANRLIHFFANGGCNSQGQLSE
RDYGQQFQHYTSHPPVNPPRLAPKQLAFPLRWQPLTVALDHRRLFGSLQH
VVPQIATHAKPHVLSRAQF*
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mRNA from alignment at ScGOVlb_3404:565777..566436-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11494.t1 ID=Gvermi11494.t1|Name=Gvermi11494.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=660bp|location=Sequence derived from alignment at ScGOVlb_3404:565777..566436- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCATCTTTGGCCGATCTGCTCACCGTCATGGACGATCCTTCAAACGA
ACTTTTGGCCGCATTCTTCCCGCCTTCAATCTTCAACGTCCAGACGCCCC
TAGCCATTTGCATCGACCCCATCAGCGCCATCGTTCAGTACCAAATCTTT
TCTGCTTGCCCTCCAGTCGCGCTCTCATTCTTCGCAGACAACCAATACGT
TCCGAACCGCTTTTGCACTGACCATACTCACAACGCTCTGGTTCAGGCCC
GCATGGTTCAGCGACTCATGGGATTCGAGTTTCCCATCGATGTCAAACCG
TCGCACAACTTCCTTATCAGCACTGCATTACATCCATGTGATCGCTCCAC
CAATGTTTCCACCCCGGTCACATGGGCCAACGTGGCCGCCAATCGTTTGA
TCCACTTCTTCGCGAACGGTGGCTGCAATTCGCAAGGCCAACTTTCGGAG
CGAGACTACGGGCAGCAGTTTCAGCATTATACTTCTCATCCTCCCGTCAA
TCCGCCCCGCCTTGCCCCGAAACAGCTCGCCTTCCCCCTTCGCTGGCAGC
CGCTCACTGTCGCTTTGGACCACCGTCGTCTGTTTGGCAGCCTGCAACAT
GTCGTCCCTCAGATCGCCACGCATGCCAAGCCGCATGTTCTCTCCCGTGC
ACAGTTTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:565777..566436-

>Gvermi11494.t1 ID=Gvermi11494.t1|Name=Gvermi11494.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=660bp|location=Sequence derived from alignment at ScGOVlb_3404:565777..566436- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCATCTTTGGCCGATCTGCTCACCGTCATGGACGATCCTTCAAACGA
ACTTTTGGCCGCATTCTTCCCGCCTTCAATCTTCAACGTCCAGACGCCCC
TAGCCATTTGCATCGACCCCATCAGCGCCATCGTTCAGTACCAAATCTTT
TCTGCTTGCCCTCCAGTCGCGCTCTCATTCTTCGCAGACAACCAATACGT
TCCGAACCGCTTTTGCACTGACCATACTCACAACGCTCTGGTTCAGGCCC
GCATGGTTCAGCGACTCATGGGATTCGAGTTTCCCATCGATGTCAAACCG
TCGCACAACTTCCTTATCAGCACTGCATTACATCCATGTGATCGCTCCAC
CAATGTTTCCACCCCGGTCACATGGGCCAACGTGGCCGCCAATCGTTTGA
TCCACTTCTTCGCGAACGGTGGCTGCAATTCGCAAGGCCAACTTTCGGAG
CGAGACTACGGGCAGCAGTTTCAGCATTATACTTCTCATCCTCCCGTCAA
TCCGCCCCGCCTTGCCCCGAAACAGCTCGCCTTCCCCCTTCGCTGGCAGC
CGCTCACTGTCGCTTTGGACCACCGTCGTCTGTTTGGCAGCCTGCAACAT
GTCGTCCCTCAGATCGCCACGCATGCCAAGCCGCATGTTCTCTCCCGTGC
ACAGTTTTAG
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