Gvermi11491.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11491.t1
Unique NameGvermi11491.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length590
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:549582..551733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708765.1
PFAMsF-box,Helicase_C,SNF2_N,zf-CW
Max annot lvl2759|Eukaryota
KEGG koko:K15505
GOsGO:0005575,GO:0005911,GO:0009506,GO:0030054,GO:0055044
Evalue7.18e-48
EggNOG OGsCOG0553@1|root,KOG1001@2759|Eukaryota
Descriptionhelicase activity
COG categoryKL
BRITEko00000,ko01000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11491Gvermi11491Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 549582..551733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11491.t1Gvermi11491.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 549582..551733 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11491.t1.stop1Gvermi11491.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 549582..549584 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11491.t1.CDS1Gvermi11491.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 549582..549591 -
Gvermi11491.t1.CDS2Gvermi11491.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 549974..551733 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11491.t1.exon1Gvermi11491.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 549582..549591 -
Gvermi11491.t1.exon2Gvermi11491.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 549974..551733 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11491.t1.intron1Gvermi11491.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 549592..549973 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11491.t1.start1Gvermi11491.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 551731..551733 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11491.t1 ID=Gvermi11491.t1|Name=Gvermi11491.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=590bp
MLPARDHANLADAHPYLRRCLASVVPALNLRLYPHQASALRRMAHMEQPD
VHVRMPLIRRFHLPHLHHCLIVADLCDGAIYRLHSFPRVKRPRGGLLCDD
PGLGKTITTLSLILKTLPRHPQPPPNCPTRLHHHHHVTVRSYQQQLHSRF
EPLHAARAPASRRHRLVPHAPHATAAAAAAAAAAAAAPKRRVRRPDFFQP
AKGRGVLPVCAARAQHVFLSPATLVVVPAVLTEHWARQLHLHVAPRALRA
LCVRSRADLPPTALQLAAAYDLVVVPFELVAALHAQIRHGAPLLLRVHFY
RLVVDEAHRLSSPALSNLAAGCHNIKADIRWVLTGTPTPCTPRTDIDHLH
SLLRFIREQAYGLDTHAWKAAIRNPYLRYEPHSLHRLSRLLHAVMIRTDD
KSIVKAKCRVRNVFLNFSKPTADSYNGLIAMGRRNLLLCDWFDDTHSQSL
LNKRNKALASSFVSNLRKSCCFGGSMHVAFNADDVVDMLIMLHDQYSAVS
HVTEQECFRDPLCERHVNVHTAEAHGCDRAYVQDLARRRALLAKLRADGT
PMMQVAKRNAKRVCDSEPEFVRYIISGKLLHIASALACT*
back to top

spliced messenger RNA

>Gvermi11491.t1 ID=Gvermi11491.t1|Name=Gvermi11491.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1770bp|location=Sequence derived from alignment at ScGOVlb_3404:549582..551733- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCCCGCCCGCGACCACGCCAACCTCGCCGACGCCCACCCGTACCT
GCGCCGCTGTCTCGCCTCCGTCGTTCCGGCCCTCAACCTCCGTCTCTACC
CGCACCAAGCCTCCGCCCTTCGCCGCATGGCCCACATGGAGCAGCCCGAC
GTCCACGTCCGCATGCCGCTCATCCGCCGCTTCCACCTGCCCCACCTGCA
CCACTGCCTCATCGTCGCAGACCTGTGCGACGGCGCCATATACCGACTCC
ACTCCTTTCCTCGCGTAAAACGCCCCAGGGGCGGCTTGCTGTGCGACGAC
CCTGGCCTGGGCAAAACCATCACCACCCTCTCCCTCATCCTCAAAACGCT
CCCACGCCACCCACAGCCGCCGCCCAACTGCCCAACCCGCCTCCACCACC
ACCACCACGTCACCGTGCGCTCGTACCAGCAGCAGCTCCACAGCCGCTTC
GAGCCGCTCCACGCCGCGCGCGCACCCGCGTCCCGCCGCCACCGCCTCGT
CCCGCACGCCCCGCACGCCACCGCCGCCGCCGCCGCCGCCGCCGCCGCCG
CCGCCGCCGCCCCGAAGCGCCGCGTGCGCCGCCCCGACTTCTTCCAGCCC
GCCAAGGGGCGCGGCGTGCTGCCCGTGTGCGCCGCGCGCGCGCAGCACGT
CTTCCTGTCGCCCGCCACGCTCGTCGTCGTGCCCGCCGTGCTCACGGAGC
ACTGGGCGCGCCAGCTGCACCTGCACGTCGCCCCGCGCGCGCTGCGCGCG
CTGTGCGTCCGCTCGCGCGCCGACCTGCCGCCCACCGCGCTGCAGCTGGC
CGCCGCCTACGACCTTGTCGTCGTCCCGTTCGAGCTCGTGGCCGCGCTGC
ACGCGCAGATCCGCCACGGCGCGCCGCTGCTGCTGCGCGTGCACTTTTAC
AGGCTCGTTGTGGACGAGGCGCACCGCCTGTCGTCGCCGGCGCTCAGCAA
CTTGGCCGCCGGCTGCCACAACATCAAAGCGGACATCCGCTGGGTCCTCA
CCGGCACGCCCACCCCGTGCACCCCGCGCACCGACATTGACCACCTGCAC
TCGCTGCTGCGCTTCATCCGCGAGCAGGCGTACGGGCTGGACACCCACGC
GTGGAAGGCAGCCATCCGCAACCCGTACCTGCGCTACGAGCCGCACAGCT
TGCACCGCCTGTCGCGCTTGCTGCACGCCGTCATGATCCGCACCGACGAC
AAGTCCATCGTCAAGGCAAAGTGCCGCGTGCGAAACGTGTTTCTCAACTT
CAGCAAGCCCACTGCCGACAGCTACAACGGGCTCATCGCAATGGGCCGGA
GGAACCTGCTGTTGTGCGACTGGTTTGACGACACTCACAGTCAGTCGCTG
CTCAACAAGCGAAACAAGGCGCTTGCCAGCAGCTTTGTGTCCAACCTGCG
CAAGTCGTGCTGCTTTGGCGGCAGCATGCACGTGGCCTTCAACGCAGACG
ACGTGGTTGATATGCTCATCATGCTGCACGACCAGTACAGCGCCGTGTCG
CACGTGACGGAGCAAGAGTGCTTTCGCGACCCGCTGTGTGAGCGGCACGT
CAACGTGCACACCGCCGAAGCGCACGGCTGCGACCGCGCGTATGTGCAGG
ACCTGGCGAGGCGGCGAGCGCTGCTGGCCAAGCTTCGCGCCGACGGCACC
CCGATGATGCAGGTGGCCAAGCGCAACGCCAAGCGCGTGTGCGACAGCGA
GCCCGAGTTTGTGCGCTACATCATCAGCGGCAAGCTGCTGCACATCGCCA
GCGCGCTGGCCTGCACCTGA
back to top

protein sequence of Gvermi11491.t1

>Gvermi11491.t1 ID=Gvermi11491.t1|Name=Gvermi11491.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=590bp
MLPARDHANLADAHPYLRRCLASVVPALNLRLYPHQASALRRMAHMEQPD
VHVRMPLIRRFHLPHLHHCLIVADLCDGAIYRLHSFPRVKRPRGGLLCDD
PGLGKTITTLSLILKTLPRHPQPPPNCPTRLHHHHHVTVRSYQQQLHSRF
EPLHAARAPASRRHRLVPHAPHATAAAAAAAAAAAAAPKRRVRRPDFFQP
AKGRGVLPVCAARAQHVFLSPATLVVVPAVLTEHWARQLHLHVAPRALRA
LCVRSRADLPPTALQLAAAYDLVVVPFELVAALHAQIRHGAPLLLRVHFY
RLVVDEAHRLSSPALSNLAAGCHNIKADIRWVLTGTPTPCTPRTDIDHLH
SLLRFIREQAYGLDTHAWKAAIRNPYLRYEPHSLHRLSRLLHAVMIRTDD
KSIVKAKCRVRNVFLNFSKPTADSYNGLIAMGRRNLLLCDWFDDTHSQSL
LNKRNKALASSFVSNLRKSCCFGGSMHVAFNADDVVDMLIMLHDQYSAVS
HVTEQECFRDPLCERHVNVHTAEAHGCDRAYVQDLARRRALLAKLRADGT
PMMQVAKRNAKRVCDSEPEFVRYIISGKLLHIASALACT*
back to top

mRNA from alignment at ScGOVlb_3404:549582..551733-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11491.t1 ID=Gvermi11491.t1|Name=Gvermi11491.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2152bp|location=Sequence derived from alignment at ScGOVlb_3404:549582..551733- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCCCCGCCCGCGACCACGCCAACCTCGCCGACGCCCACCCGTACCT
GCGCCGCTGTCTCGCCTCCGTCGTTCCGGCCCTCAACCTCCGTCTCTACC
CGCACCAAGCCTCCGCCCTTCGCCGCATGGCCCACATGGAGCAGCCCGAC
GTCCACGTCCGCATGCCGCTCATCCGCCGCTTCCACCTGCCCCACCTGCA
CCACTGCCTCATCGTCGCAGACCTGTGCGACGGCGCCATATACCGACTCC
ACTCCTTTCCTCGCGTAAAACGCCCCAGGGGCGGCTTGCTGTGCGACGAC
CCTGGCCTGGGCAAAACCATCACCACCCTCTCCCTCATCCTCAAAACGCT
CCCACGCCACCCACAGCCGCCGCCCAACTGCCCAACCCGCCTCCACCACC
ACCACCACGTCACCGTGCGCTCGTACCAGCAGCAGCTCCACAGCCGCTTC
GAGCCGCTCCACGCCGCGCGCGCACCCGCGTCCCGCCGCCACCGCCTCGT
CCCGCACGCCCCGCACGCCACCGCCGCCGCCGCCGCCGCCGCCGCCGCCG
CCGCCGCCGCCCCGAAGCGCCGCGTGCGCCGCCCCGACTTCTTCCAGCCC
GCCAAGGGGCGCGGCGTGCTGCCCGTGTGCGCCGCGCGCGCGCAGCACGT
CTTCCTGTCGCCCGCCACGCTCGTCGTCGTGCCCGCCGTGCTCACGGAGC
ACTGGGCGCGCCAGCTGCACCTGCACGTCGCCCCGCGCGCGCTGCGCGCG
CTGTGCGTCCGCTCGCGCGCCGACCTGCCGCCCACCGCGCTGCAGCTGGC
CGCCGCCTACGACCTTGTCGTCGTCCCGTTCGAGCTCGTGGCCGCGCTGC
ACGCGCAGATCCGCCACGGCGCGCCGCTGCTGCTGCGCGTGCACTTTTAC
AGGCTCGTTGTGGACGAGGCGCACCGCCTGTCGTCGCCGGCGCTCAGCAA
CTTGGCCGCCGGCTGCCACAACATCAAAGCGGACATCCGCTGGGTCCTCA
CCGGCACGCCCACCCCGTGCACCCCGCGCACCGACATTGACCACCTGCAC
TCGCTGCTGCGCTTCATCCGCGAGCAGGCGTACGGGCTGGACACCCACGC
GTGGAAGGCAGCCATCCGCAACCCGTACCTGCGCTACGAGCCGCACAGCT
TGCACCGCCTGTCGCGCTTGCTGCACGCCGTCATGATCCGCACCGACGAC
AAGTCCATCGTCAAGGCAAAGTGCCGCGTGCGAAACGTGTTTCTCAACTT
CAGCAAGCCCACTGCCGACAGCTACAACGGGCTCATCGCAATGGGCCGGA
GGAACCTGCTGTTGTGCGACTGGTTTGACGACACTCACAGTCAGTCGCTG
CTCAACAAGCGAAACAAGGCGCTTGCCAGCAGCTTTGTGTCCAACCTGCG
CAAGTCGTGCTGCTTTGGCGGCAGCATGCACGTGGCCTTCAACGCAGACG
ACGTGGTTGATATGCTCATCATGCTGCACGACCAGTACAGCGCCGTGTCG
CACGTGACGGAGCAAGAGTGCTTTCGCGACCCGCTGTGTGAGCGGCACGT
CAACGTGCACACCGCCGAAGCGCACGGCTGCGACCGCGCGTATGTGCAGG
ACCTGGCGAGGCGGCGAGCGCTGCTGGCCAAGCTTCGCGCCGACGGCACC
CCGATGATGCAGGTGGCCAAGCGCAACGCCAAGCGCGTGTGCGACAGCGA
GCCCGAGTTTGTGCGCTACATCATCAGCGGCAAGCTGCTGCACATCGCCA
GCGCGCTGGCGTCGCGCAGCGGCAGCTGCAGCCGCTGCGGCCGGCGCAGC
CACATGCCGTTCGTCACGCCGTGCGCGCACCTGCTGTGCTTGCGCTGCGT
CGTGAGCGACCGACAGCGCTGCGCGGCGCCGCGCTGCCGCGCGCCCTACG
CCATGGGGCGCCACCGCGAGCCCGCGTCGCTCATCGAGCTGCAGCCCAGC
GTGCTGTGCAGCGCGTGGCGCGCGGACTGGGACAAGACCGAAAGCTCCAA
GATGCGCTACCTGGTGAGCCGCATCGAGCAGCTGCCGCTGGTGCCGGCGC
GCGCGGCGCACGGCGGCGGCGGCGCGCGGCGCATGGTGCGCCCAAAGGTG
ATTGTGCACAGCGAGCACACGGACCACCTCAAGCTGGCGCAGCTGCACCT
GA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:549582..551733-

>Gvermi11491.t1 ID=Gvermi11491.t1|Name=Gvermi11491.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1770bp|location=Sequence derived from alignment at ScGOVlb_3404:549582..551733- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCCCCGCCCGCGACCACGCCAACCTCGCCGACGCCCACCCGTACCT
GCGCCGCTGTCTCGCCTCCGTCGTTCCGGCCCTCAACCTCCGTCTCTACC
CGCACCAAGCCTCCGCCCTTCGCCGCATGGCCCACATGGAGCAGCCCGAC
GTCCACGTCCGCATGCCGCTCATCCGCCGCTTCCACCTGCCCCACCTGCA
CCACTGCCTCATCGTCGCAGACCTGTGCGACGGCGCCATATACCGACTCC
ACTCCTTTCCTCGCGTAAAACGCCCCAGGGGCGGCTTGCTGTGCGACGAC
CCTGGCCTGGGCAAAACCATCACCACCCTCTCCCTCATCCTCAAAACGCT
CCCACGCCACCCACAGCCGCCGCCCAACTGCCCAACCCGCCTCCACCACC
ACCACCACGTCACCGTGCGCTCGTACCAGCAGCAGCTCCACAGCCGCTTC
GAGCCGCTCCACGCCGCGCGCGCACCCGCGTCCCGCCGCCACCGCCTCGT
CCCGCACGCCCCGCACGCCACCGCCGCCGCCGCCGCCGCCGCCGCCGCCG
CCGCCGCCGCCCCGAAGCGCCGCGTGCGCCGCCCCGACTTCTTCCAGCCC
GCCAAGGGGCGCGGCGTGCTGCCCGTGTGCGCCGCGCGCGCGCAGCACGT
CTTCCTGTCGCCCGCCACGCTCGTCGTCGTGCCCGCCGTGCTCACGGAGC
ACTGGGCGCGCCAGCTGCACCTGCACGTCGCCCCGCGCGCGCTGCGCGCG
CTGTGCGTCCGCTCGCGCGCCGACCTGCCGCCCACCGCGCTGCAGCTGGC
CGCCGCCTACGACCTTGTCGTCGTCCCGTTCGAGCTCGTGGCCGCGCTGC
ACGCGCAGATCCGCCACGGCGCGCCGCTGCTGCTGCGCGTGCACTTTTAC
AGGCTCGTTGTGGACGAGGCGCACCGCCTGTCGTCGCCGGCGCTCAGCAA
CTTGGCCGCCGGCTGCCACAACATCAAAGCGGACATCCGCTGGGTCCTCA
CCGGCACGCCCACCCCGTGCACCCCGCGCACCGACATTGACCACCTGCAC
TCGCTGCTGCGCTTCATCCGCGAGCAGGCGTACGGGCTGGACACCCACGC
GTGGAAGGCAGCCATCCGCAACCCGTACCTGCGCTACGAGCCGCACAGCT
TGCACCGCCTGTCGCGCTTGCTGCACGCCGTCATGATCCGCACCGACGAC
AAGTCCATCGTCAAGGCAAAGTGCCGCGTGCGAAACGTGTTTCTCAACTT
CAGCAAGCCCACTGCCGACAGCTACAACGGGCTCATCGCAATGGGCCGGA
GGAACCTGCTGTTGTGCGACTGGTTTGACGACACTCACAGTCAGTCGCTG
CTCAACAAGCGAAACAAGGCGCTTGCCAGCAGCTTTGTGTCCAACCTGCG
CAAGTCGTGCTGCTTTGGCGGCAGCATGCACGTGGCCTTCAACGCAGACG
ACGTGGTTGATATGCTCATCATGCTGCACGACCAGTACAGCGCCGTGTCG
CACGTGACGGAGCAAGAGTGCTTTCGCGACCCGCTGTGTGAGCGGCACGT
CAACGTGCACACCGCCGAAGCGCACGGCTGCGACCGCGCGTATGTGCAGG
ACCTGGCGAGGCGGCGAGCGCTGCTGGCCAAGCTTCGCGCCGACGGCACC
CCGATGATGCAGGTGGCCAAGCGCAACGCCAAGCGCGTGTGCGACAGCGA
GCCCGAGTTTGTGCGCTACATCATCAGCGGCAAGCTGCTGCACATCGCCA
GCGCGCTGGCCTGCACCTGA
back to top