Gvermi11485.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11485.t1
Unique Name	Gvermi11485.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	652

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:534520..536475 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708220.1
Preferred name	SLY1
PFAMs	Sec1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K19998
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Evalue	3.49e-146
EggNOG OGs	COG5158@1\|root,KOG1301@2759\|Eukaryota
Description	vesicle docking involved in exocytosis
COG category	U
BRITE	ko00000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11485	Gvermi11485	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 534520..536475 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11485.t1.stop1	Gvermi11485.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 534520..534522 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11485.t1.CDS1	Gvermi11485.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 534520..536475 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11485.t1.exon1	Gvermi11485.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 534520..536475 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11485.t1.start1	Gvermi11485.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 536473..536475 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11485.t1	Gvermi11485.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 534520..536475 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:534520..536475-
coding sequence from alignment at ScGOVlb_3404:534520..536475-

mRNA sequence

>Gvermi11485.t1 ID=Gvermi11485.t1|Name=Gvermi11485.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=652bp
MDSSSQLSHLSVRTRQRDALLQMLSSCTAGSDALEDSNDVWKVLIYDATG
RDIIAPLLQVADLRAAGVTLHMMLHASRQPIPDVPAVYFVEPTKDNLTRI
SNDSAKGFYASLWINFTDSISRDHLESFADMVATASNPSPFAGRIARVYD
MYTSFLSLEDSLFHLNLRGSYVALNASNVTDSEVEAVIKSIVDRLFCLIV
TLGVAPIIRAQRGGPALHVARRLEQRIREHLISSNNVFSETMSFAAAPAE
RPLLIIVDRSIDIAVMLHHTWTYQALAHDALGMKLNRVTVPMKDENSALG
EVRKRVFDLDKSDSFWVNNAGLPFPMVADAVENALQAYQNEVAELNRSAG
TIGDGPIDPTTATLEEGANTNKLAAAILSIPELSKKKRTIDLHTNIATAI
LDQIKDRGLDGFFQVEEELLTRPNTFDVERILAVLRHTKGTPTDKLRLFL
VYYLCVDNASEDDLNRCTDALEEAGCSDMRAFDYLKSIRAFTKKVSAIPK
PQLTASTSIGGGYALSVLDTLSQVASNVNKLIISADKALAAARIVQTLMD
RKGDAGILEDYETLDPKAPKGTVPPSATRACKEAVLFVVGPGNYIEFQNC
QDQVCSKVVQEGKNTKFVPNGKTVIYGATELCSGAEFIEQLHKSSATTPS
S*

spliced messenger RNA

>Gvermi11485.t1 ID=Gvermi11485.t1|Name=Gvermi11485.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1956bp|location=Sequence derived from alignment at ScGOVlb_3404:534520..536475- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCTTCGTCGCAACTTTCCCATCTGTCCGTGCGAACTCGGCAACG
AGATGCGCTTCTTCAGATGCTTTCATCATGCACTGCCGGTTCAGATGCTC
TGGAGGACAGCAACGACGTTTGGAAGGTTCTCATCTATGACGCTACAGGC
AGAGATATAATTGCTCCGCTGCTCCAGGTGGCTGATTTGCGAGCCGCAGG
CGTCACGCTGCACATGATGCTCCACGCATCTCGCCAACCCATTCCTGACG
TTCCGGCTGTTTATTTTGTGGAGCCTACGAAGGACAATCTCACCCGCATT
TCCAATGATTCGGCCAAAGGCTTTTATGCCAGTCTATGGATCAACTTTAC
CGACTCAATCTCGAGAGACCATCTCGAAAGTTTTGCCGATATGGTGGCAA
CCGCTTCCAACCCCAGCCCTTTCGCCGGCAGAATAGCCCGCGTGTACGAT
ATGTATACGTCATTTCTATCCTTGGAAGACAGCTTATTCCACTTAAATCT
TCGCGGGTCCTACGTCGCATTGAATGCTTCAAATGTCACTGATTCGGAAG
TTGAAGCAGTTATCAAGTCTATCGTTGATCGTCTGTTTTGTTTGATCGTC
ACACTCGGCGTGGCCCCCATAATACGCGCTCAGAGAGGTGGGCCTGCTTT
GCATGTAGCGCGTAGGCTAGAGCAACGCATCCGCGAACACCTCATTTCCA
GCAATAATGTTTTCTCCGAGACCATGTCTTTCGCTGCCGCACCTGCAGAA
CGGCCATTGTTGATTATCGTCGATCGTAGCATTGACATAGCAGTCATGTT
ACATCACACGTGGACATATCAAGCACTTGCTCACGATGCGCTAGGTATGA
AACTAAATAGAGTCACAGTCCCAATGAAAGACGAAAATAGCGCTCTGGGC
GAAGTTCGAAAACGAGTCTTCGACTTGGATAAGAGCGACAGCTTTTGGGT
CAACAATGCTGGGCTCCCATTTCCGATGGTCGCCGATGCTGTGGAAAACG
CGCTTCAAGCCTATCAAAACGAAGTCGCAGAATTGAATCGATCGGCAGGA
ACTATTGGTGACGGGCCGATTGACCCGACAACAGCCACATTAGAAGAAGG
AGCAAATACCAACAAACTCGCGGCAGCTATATTAAGCATCCCTGAGCTTT
CAAAGAAAAAACGTACTATAGATCTTCACACTAATATTGCCACCGCAATT
CTGGATCAAATTAAGGACAGAGGGCTCGATGGTTTCTTTCAAGTGGAGGA
AGAGTTGTTAACGCGACCTAACACTTTCGATGTCGAACGCATTTTGGCAG
TGCTTCGACATACGAAAGGAACACCAACTGATAAGCTAAGACTGTTTTTG
GTGTACTATCTGTGCGTGGACAATGCAAGTGAAGATGACCTAAACAGATG
CACTGACGCTTTGGAGGAGGCTGGTTGTTCGGATATGCGCGCTTTTGACT
ATCTGAAAAGCATCAGAGCTTTTACAAAGAAGGTGTCTGCCATTCCCAAA
CCGCAATTGACAGCCTCCACAAGCATTGGAGGCGGATATGCCCTTTCTGT
ATTAGATACACTATCGCAGGTGGCAAGCAATGTGAATAAGTTGATCATTT
CCGCAGATAAAGCCCTCGCAGCTGCAAGAATTGTGCAGACATTGATGGAC
CGGAAAGGGGATGCCGGTATTTTAGAGGATTATGAGACGCTGGATCCGAA
GGCCCCTAAAGGCACCGTTCCACCTTCCGCAACACGGGCTTGCAAGGAAG
CAGTTCTCTTTGTTGTTGGACCCGGGAATTATATTGAGTTCCAAAATTGT
CAGGATCAAGTTTGCTCAAAGGTTGTGCAAGAAGGGAAGAACACAAAATT
TGTACCAAACGGGAAGACAGTAATTTACGGCGCTACAGAATTATGCTCAG
GTGCTGAGTTCATAGAGCAACTTCACAAAAGCAGCGCGACAACACCGTCC
TCATGA

protein sequence of Gvermi11485.t1

>Gvermi11485.t1 ID=Gvermi11485.t1|Name=Gvermi11485.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=652bp
MDSSSQLSHLSVRTRQRDALLQMLSSCTAGSDALEDSNDVWKVLIYDATG
RDIIAPLLQVADLRAAGVTLHMMLHASRQPIPDVPAVYFVEPTKDNLTRI
SNDSAKGFYASLWINFTDSISRDHLESFADMVATASNPSPFAGRIARVYD
MYTSFLSLEDSLFHLNLRGSYVALNASNVTDSEVEAVIKSIVDRLFCLIV
TLGVAPIIRAQRGGPALHVARRLEQRIREHLISSNNVFSETMSFAAAPAE
RPLLIIVDRSIDIAVMLHHTWTYQALAHDALGMKLNRVTVPMKDENSALG
EVRKRVFDLDKSDSFWVNNAGLPFPMVADAVENALQAYQNEVAELNRSAG
TIGDGPIDPTTATLEEGANTNKLAAAILSIPELSKKKRTIDLHTNIATAI
LDQIKDRGLDGFFQVEEELLTRPNTFDVERILAVLRHTKGTPTDKLRLFL
VYYLCVDNASEDDLNRCTDALEEAGCSDMRAFDYLKSIRAFTKKVSAIPK
PQLTASTSIGGGYALSVLDTLSQVASNVNKLIISADKALAAARIVQTLMD
RKGDAGILEDYETLDPKAPKGTVPPSATRACKEAVLFVVGPGNYIEFQNC
QDQVCSKVVQEGKNTKFVPNGKTVIYGATELCSGAEFIEQLHKSSATTPS
S*

mRNA from alignment at ScGOVlb_3404:534520..536475-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11485.t1 ID=Gvermi11485.t1|Name=Gvermi11485.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1956bp|location=Sequence derived from alignment at ScGOVlb_3404:534520..536475- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTCTTCGTCGCAACTTTCCCATCTGTCCGTGCGAACTCGGCAACG
AGATGCGCTTCTTCAGATGCTTTCATCATGCACTGCCGGTTCAGATGCTC
TGGAGGACAGCAACGACGTTTGGAAGGTTCTCATCTATGACGCTACAGGC
AGAGATATAATTGCTCCGCTGCTCCAGGTGGCTGATTTGCGAGCCGCAGG
CGTCACGCTGCACATGATGCTCCACGCATCTCGCCAACCCATTCCTGACG
TTCCGGCTGTTTATTTTGTGGAGCCTACGAAGGACAATCTCACCCGCATT
TCCAATGATTCGGCCAAAGGCTTTTATGCCAGTCTATGGATCAACTTTAC
CGACTCAATCTCGAGAGACCATCTCGAAAGTTTTGCCGATATGGTGGCAA
CCGCTTCCAACCCCAGCCCTTTCGCCGGCAGAATAGCCCGCGTGTACGAT
ATGTATACGTCATTTCTATCCTTGGAAGACAGCTTATTCCACTTAAATCT
TCGCGGGTCCTACGTCGCATTGAATGCTTCAAATGTCACTGATTCGGAAG
TTGAAGCAGTTATCAAGTCTATCGTTGATCGTCTGTTTTGTTTGATCGTC
ACACTCGGCGTGGCCCCCATAATACGCGCTCAGAGAGGTGGGCCTGCTTT
GCATGTAGCGCGTAGGCTAGAGCAACGCATCCGCGAACACCTCATTTCCA
GCAATAATGTTTTCTCCGAGACCATGTCTTTCGCTGCCGCACCTGCAGAA
CGGCCATTGTTGATTATCGTCGATCGTAGCATTGACATAGCAGTCATGTT
ACATCACACGTGGACATATCAAGCACTTGCTCACGATGCGCTAGGTATGA
AACTAAATAGAGTCACAGTCCCAATGAAAGACGAAAATAGCGCTCTGGGC
GAAGTTCGAAAACGAGTCTTCGACTTGGATAAGAGCGACAGCTTTTGGGT
CAACAATGCTGGGCTCCCATTTCCGATGGTCGCCGATGCTGTGGAAAACG
CGCTTCAAGCCTATCAAAACGAAGTCGCAGAATTGAATCGATCGGCAGGA
ACTATTGGTGACGGGCCGATTGACCCGACAACAGCCACATTAGAAGAAGG
AGCAAATACCAACAAACTCGCGGCAGCTATATTAAGCATCCCTGAGCTTT
CAAAGAAAAAACGTACTATAGATCTTCACACTAATATTGCCACCGCAATT
CTGGATCAAATTAAGGACAGAGGGCTCGATGGTTTCTTTCAAGTGGAGGA
AGAGTTGTTAACGCGACCTAACACTTTCGATGTCGAACGCATTTTGGCAG
TGCTTCGACATACGAAAGGAACACCAACTGATAAGCTAAGACTGTTTTTG
GTGTACTATCTGTGCGTGGACAATGCAAGTGAAGATGACCTAAACAGATG
CACTGACGCTTTGGAGGAGGCTGGTTGTTCGGATATGCGCGCTTTTGACT
ATCTGAAAAGCATCAGAGCTTTTACAAAGAAGGTGTCTGCCATTCCCAAA
CCGCAATTGACAGCCTCCACAAGCATTGGAGGCGGATATGCCCTTTCTGT
ATTAGATACACTATCGCAGGTGGCAAGCAATGTGAATAAGTTGATCATTT
CCGCAGATAAAGCCCTCGCAGCTGCAAGAATTGTGCAGACATTGATGGAC
CGGAAAGGGGATGCCGGTATTTTAGAGGATTATGAGACGCTGGATCCGAA
GGCCCCTAAAGGCACCGTTCCACCTTCCGCAACACGGGCTTGCAAGGAAG
CAGTTCTCTTTGTTGTTGGACCCGGGAATTATATTGAGTTCCAAAATTGT
CAGGATCAAGTTTGCTCAAAGGTTGTGCAAGAAGGGAAGAACACAAAATT
TGTACCAAACGGGAAGACAGTAATTTACGGCGCTACAGAATTATGCTCAG
GTGCTGAGTTCATAGAGCAACTTCACAAAAGCAGCGCGACAACACCGTCC
TCATGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:534520..536475-

>Gvermi11485.t1 ID=Gvermi11485.t1|Name=Gvermi11485.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1956bp|location=Sequence derived from alignment at ScGOVlb_3404:534520..536475- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATTCTTCGTCGCAACTTTCCCATCTGTCCGTGCGAACTCGGCAACG
AGATGCGCTTCTTCAGATGCTTTCATCATGCACTGCCGGTTCAGATGCTC
TGGAGGACAGCAACGACGTTTGGAAGGTTCTCATCTATGACGCTACAGGC
AGAGATATAATTGCTCCGCTGCTCCAGGTGGCTGATTTGCGAGCCGCAGG
CGTCACGCTGCACATGATGCTCCACGCATCTCGCCAACCCATTCCTGACG
TTCCGGCTGTTTATTTTGTGGAGCCTACGAAGGACAATCTCACCCGCATT
TCCAATGATTCGGCCAAAGGCTTTTATGCCAGTCTATGGATCAACTTTAC
CGACTCAATCTCGAGAGACCATCTCGAAAGTTTTGCCGATATGGTGGCAA
CCGCTTCCAACCCCAGCCCTTTCGCCGGCAGAATAGCCCGCGTGTACGAT
ATGTATACGTCATTTCTATCCTTGGAAGACAGCTTATTCCACTTAAATCT
TCGCGGGTCCTACGTCGCATTGAATGCTTCAAATGTCACTGATTCGGAAG
TTGAAGCAGTTATCAAGTCTATCGTTGATCGTCTGTTTTGTTTGATCGTC
ACACTCGGCGTGGCCCCCATAATACGCGCTCAGAGAGGTGGGCCTGCTTT
GCATGTAGCGCGTAGGCTAGAGCAACGCATCCGCGAACACCTCATTTCCA
GCAATAATGTTTTCTCCGAGACCATGTCTTTCGCTGCCGCACCTGCAGAA
CGGCCATTGTTGATTATCGTCGATCGTAGCATTGACATAGCAGTCATGTT
ACATCACACGTGGACATATCAAGCACTTGCTCACGATGCGCTAGGTATGA
AACTAAATAGAGTCACAGTCCCAATGAAAGACGAAAATAGCGCTCTGGGC
GAAGTTCGAAAACGAGTCTTCGACTTGGATAAGAGCGACAGCTTTTGGGT
CAACAATGCTGGGCTCCCATTTCCGATGGTCGCCGATGCTGTGGAAAACG
CGCTTCAAGCCTATCAAAACGAAGTCGCAGAATTGAATCGATCGGCAGGA
ACTATTGGTGACGGGCCGATTGACCCGACAACAGCCACATTAGAAGAAGG
AGCAAATACCAACAAACTCGCGGCAGCTATATTAAGCATCCCTGAGCTTT
CAAAGAAAAAACGTACTATAGATCTTCACACTAATATTGCCACCGCAATT
CTGGATCAAATTAAGGACAGAGGGCTCGATGGTTTCTTTCAAGTGGAGGA
AGAGTTGTTAACGCGACCTAACACTTTCGATGTCGAACGCATTTTGGCAG
TGCTTCGACATACGAAAGGAACACCAACTGATAAGCTAAGACTGTTTTTG
GTGTACTATCTGTGCGTGGACAATGCAAGTGAAGATGACCTAAACAGATG
CACTGACGCTTTGGAGGAGGCTGGTTGTTCGGATATGCGCGCTTTTGACT
ATCTGAAAAGCATCAGAGCTTTTACAAAGAAGGTGTCTGCCATTCCCAAA
CCGCAATTGACAGCCTCCACAAGCATTGGAGGCGGATATGCCCTTTCTGT
ATTAGATACACTATCGCAGGTGGCAAGCAATGTGAATAAGTTGATCATTT
CCGCAGATAAAGCCCTCGCAGCTGCAAGAATTGTGCAGACATTGATGGAC
CGGAAAGGGGATGCCGGTATTTTAGAGGATTATGAGACGCTGGATCCGAA
GGCCCCTAAAGGCACCGTTCCACCTTCCGCAACACGGGCTTGCAAGGAAG
CAGTTCTCTTTGTTGTTGGACCCGGGAATTATATTGAGTTCCAAAATTGT
CAGGATCAAGTTTGCTCAAAGGTTGTGCAAGAAGGGAAGAACACAAAATT
TGTACCAAACGGGAAGACAGTAATTTACGGCGCTACAGAATTATGCTCAG
GTGCTGAGTTCATAGAGCAACTTCACAAAAGCAGCGCGACAACACCGTCC
TCATGA