Gvermi11482.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11482.t1
Unique Name	Gvermi11482.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	312

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:521176..522111 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	67593.Physo141633
PFAMs	DUF410
Max annot lvl	4776\|Peronosporales
Evalue	1.04e-29
EggNOG OGs	KOG3024@1\|root,KOG3024@2759\|Eukaryota,3Q87V@4776\|Peronosporales
Description	Protein of unknown function (DUF410)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11482	Gvermi11482	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 521176..522111 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11482.t1.start1	Gvermi11482.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 521176..521178 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11482.t1.CDS1	Gvermi11482.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 521176..522111 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11482.t1.exon1	Gvermi11482.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 521176..522111 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11482.t1.stop1	Gvermi11482.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 522109..522111 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11482.t1	Gvermi11482.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 521176..522111 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:521176..522111+
coding sequence from alignment at ScGOVlb_3404:521176..522111+

mRNA sequence

>Gvermi11482.t1 ID=Gvermi11482.t1|Name=Gvermi11482.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=312bp
MASLKSLQKRYERSIESGDYYGAEQACMMMHHRLTQGKNQSPEHIEKALS
ILLDAAITLLGKKQAQAGSSLGLAAVRHYVDYKKEVTDESVCALGKIADA
YDPAAGNDVEVRREKLRFLKAALAWSAREDCSGFANGHATLNAMTARAAA
EVDNYELSQQLYVFSDAPEEAAKFLYKYAKEHTNTDEHGLALTRVIVRYL
GSENLKDACVVRAKFAELAGWTSMESGGDGTSVPPLANFCELLLKVCQLE
RRAAPLYQKICRVYEPELSRDETLSPILTKLGSKYFGIQPPQPTGMAGMM
SSMLRGMMGAS*

spliced messenger RNA

>Gvermi11482.t1 ID=Gvermi11482.t1|Name=Gvermi11482.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=936bp|location=Sequence derived from alignment at ScGOVlb_3404:521176..522111+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCGTTAAAAAGTTTGCAGAAACGTTACGAGAGAAGCATCGAAAG
CGGAGACTACTATGGAGCTGAGCAGGCGTGCATGATGATGCATCATCGGC
TCACGCAAGGTAAGAATCAATCACCCGAGCACATTGAGAAAGCACTCTCT
ATTCTTCTTGATGCTGCTATTACTTTACTTGGGAAGAAACAAGCCCAGGC
TGGCTCTTCACTTGGCTTGGCAGCAGTGCGCCATTACGTAGACTATAAGA
AGGAAGTCACCGATGAATCTGTTTGCGCCCTGGGGAAGATCGCCGATGCT
TACGATCCGGCTGCAGGAAACGACGTTGAGGTTCGCCGAGAGAAGCTACG
ATTTTTGAAGGCAGCTTTGGCCTGGTCTGCACGAGAAGATTGTTCGGGAT
TCGCCAACGGCCATGCCACTCTCAACGCCATGACTGCCCGTGCTGCCGCC
GAAGTGGACAACTACGAACTTTCACAGCAACTGTACGTTTTCTCGGACGC
ACCGGAGGAAGCCGCCAAGTTCCTGTACAAATACGCGAAAGAGCATACAA
ACACGGATGAGCACGGTTTAGCTCTCACGCGTGTTATCGTCAGATACCTC
GGATCGGAAAACCTGAAGGATGCCTGCGTTGTGCGAGCAAAATTTGCAGA
ACTCGCTGGATGGACCTCCATGGAAAGCGGGGGCGATGGAACGAGTGTTC
CTCCCCTAGCAAACTTTTGCGAACTTCTTCTCAAAGTGTGTCAGCTGGAG
AGAAGAGCTGCCCCACTGTATCAAAAGATCTGTCGAGTTTATGAGCCAGA
ACTGAGCAGAGATGAAACTTTATCACCTATTCTCACAAAACTCGGAAGTA
AGTACTTTGGGATCCAACCGCCGCAACCGACGGGTATGGCAGGTATGATG
AGTAGCATGCTACGAGGCATGATGGGCGCAAGTTGA

protein sequence of Gvermi11482.t1

>Gvermi11482.t1 ID=Gvermi11482.t1|Name=Gvermi11482.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=312bp
MASLKSLQKRYERSIESGDYYGAEQACMMMHHRLTQGKNQSPEHIEKALS
ILLDAAITLLGKKQAQAGSSLGLAAVRHYVDYKKEVTDESVCALGKIADA
YDPAAGNDVEVRREKLRFLKAALAWSAREDCSGFANGHATLNAMTARAAA
EVDNYELSQQLYVFSDAPEEAAKFLYKYAKEHTNTDEHGLALTRVIVRYL
GSENLKDACVVRAKFAELAGWTSMESGGDGTSVPPLANFCELLLKVCQLE
RRAAPLYQKICRVYEPELSRDETLSPILTKLGSKYFGIQPPQPTGMAGMM
SSMLRGMMGAS*

mRNA from alignment at ScGOVlb_3404:521176..522111+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11482.t1 ID=Gvermi11482.t1|Name=Gvermi11482.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=936bp|location=Sequence derived from alignment at ScGOVlb_3404:521176..522111+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTCGTTAAAAAGTTTGCAGAAACGTTACGAGAGAAGCATCGAAAG
CGGAGACTACTATGGAGCTGAGCAGGCGTGCATGATGATGCATCATCGGC
TCACGCAAGGTAAGAATCAATCACCCGAGCACATTGAGAAAGCACTCTCT
ATTCTTCTTGATGCTGCTATTACTTTACTTGGGAAGAAACAAGCCCAGGC
TGGCTCTTCACTTGGCTTGGCAGCAGTGCGCCATTACGTAGACTATAAGA
AGGAAGTCACCGATGAATCTGTTTGCGCCCTGGGGAAGATCGCCGATGCT
TACGATCCGGCTGCAGGAAACGACGTTGAGGTTCGCCGAGAGAAGCTACG
ATTTTTGAAGGCAGCTTTGGCCTGGTCTGCACGAGAAGATTGTTCGGGAT
TCGCCAACGGCCATGCCACTCTCAACGCCATGACTGCCCGTGCTGCCGCC
GAAGTGGACAACTACGAACTTTCACAGCAACTGTACGTTTTCTCGGACGC
ACCGGAGGAAGCCGCCAAGTTCCTGTACAAATACGCGAAAGAGCATACAA
ACACGGATGAGCACGGTTTAGCTCTCACGCGTGTTATCGTCAGATACCTC
GGATCGGAAAACCTGAAGGATGCCTGCGTTGTGCGAGCAAAATTTGCAGA
ACTCGCTGGATGGACCTCCATGGAAAGCGGGGGCGATGGAACGAGTGTTC
CTCCCCTAGCAAACTTTTGCGAACTTCTTCTCAAAGTGTGTCAGCTGGAG
AGAAGAGCTGCCCCACTGTATCAAAAGATCTGTCGAGTTTATGAGCCAGA
ACTGAGCAGAGATGAAACTTTATCACCTATTCTCACAAAACTCGGAAGTA
AGTACTTTGGGATCCAACCGCCGCAACCGACGGGTATGGCAGGTATGATG
AGTAGCATGCTACGAGGCATGATGGGCGCAAGTTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:521176..522111+

>Gvermi11482.t1 ID=Gvermi11482.t1|Name=Gvermi11482.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=936bp|location=Sequence derived from alignment at ScGOVlb_3404:521176..522111+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCTCGTTAAAAAGTTTGCAGAAACGTTACGAGAGAAGCATCGAAAG
CGGAGACTACTATGGAGCTGAGCAGGCGTGCATGATGATGCATCATCGGC
TCACGCAAGGTAAGAATCAATCACCCGAGCACATTGAGAAAGCACTCTCT
ATTCTTCTTGATGCTGCTATTACTTTACTTGGGAAGAAACAAGCCCAGGC
TGGCTCTTCACTTGGCTTGGCAGCAGTGCGCCATTACGTAGACTATAAGA
AGGAAGTCACCGATGAATCTGTTTGCGCCCTGGGGAAGATCGCCGATGCT
TACGATCCGGCTGCAGGAAACGACGTTGAGGTTCGCCGAGAGAAGCTACG
ATTTTTGAAGGCAGCTTTGGCCTGGTCTGCACGAGAAGATTGTTCGGGAT
TCGCCAACGGCCATGCCACTCTCAACGCCATGACTGCCCGTGCTGCCGCC
GAAGTGGACAACTACGAACTTTCACAGCAACTGTACGTTTTCTCGGACGC
ACCGGAGGAAGCCGCCAAGTTCCTGTACAAATACGCGAAAGAGCATACAA
ACACGGATGAGCACGGTTTAGCTCTCACGCGTGTTATCGTCAGATACCTC
GGATCGGAAAACCTGAAGGATGCCTGCGTTGTGCGAGCAAAATTTGCAGA
ACTCGCTGGATGGACCTCCATGGAAAGCGGGGGCGATGGAACGAGTGTTC
CTCCCCTAGCAAACTTTTGCGAACTTCTTCTCAAAGTGTGTCAGCTGGAG
AGAAGAGCTGCCCCACTGTATCAAAAGATCTGTCGAGTTTATGAGCCAGA
ACTGAGCAGAGATGAAACTTTATCACCTATTCTCACAAAACTCGGAAGTA
AGTACTTTGGGATCCAACCGCCGCAACCGACGGGTATGGCAGGTATGATG
AGTAGCATGCTACGAGGCATGATGGGCGCAAGTTGA