Gvermi11479.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11479.t1
Unique Name	Gvermi11479.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	484

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:515169..516620 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1122604.JONR01000015_gene156
PFAMs	DUF1298,WES_acyltransf
Max annot lvl	135614\|Xanthomonadales
Evalue	1.57e-32
EggNOG OGs	COG1020@1\|root,COG1020@2\|Bacteria,1N7HY@1224\|Proteobacteria,1S1HS@1236\|Gammaproteobacteria,1X48P@135614\|Xanthomonadales
Description	Protein of unknown function (DUF1298)
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11479	Gvermi11479	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 515169..516620 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11479.t1.start1	Gvermi11479.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 515169..515171 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11479.t1.CDS1	Gvermi11479.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 515169..516620 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11479.t1.exon1	Gvermi11479.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 515169..516620 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11479.t1.stop1	Gvermi11479.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 516618..516620 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11479.t1	Gvermi11479.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 515169..516620 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:515169..516620+
coding sequence from alignment at ScGOVlb_3404:515169..516620+

mRNA sequence

>Gvermi11479.t1 ID=Gvermi11479.t1|Name=Gvermi11479.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=484bp
MTGAWANTTPTERLFLDEVVPHNPVIITASITLSKCPSEQWIFSNLIPRV
LAHPRFSARIIVPPNGKAKFETIPGFATHSEQLKQHHVVIEPVIDVSLPH
DKRANAFQQRLSQIISEPFPQHRPLWKMFFFPMWSIAPESQAKQCATIVF
RVHHAIGDGVGLVEFFLSHIIDKDEENIEHLCVIPRRHRHARQPDVASAA
PRSDIRGSRGGWLANTKHALVEKWMAFTTNVYAVVGTMVPEEDNTFVRSG
IQAKKVCALMPPSAAYTVASLKSAARSLGITINDMLYTAVSGATRAYLTE
SGDDVDGLKDLRCGVPYNQRLDTAGGGELSNQFAIMSLPLHACQSQLHER
LRLCVRTMRIMKRGTAALLIAFLLKMVARLPTVMRRSLWRRLTRCGSLVF
TNVPGPRRAVSVGGMEVSGLHFFAPCDGHCGVVVGLHSYNGRISIGVYGD
EQRIRNPQRYMELLDEEIKKLLQLGDVRLISSC*

spliced messenger RNA

>Gvermi11479.t1 ID=Gvermi11479.t1|Name=Gvermi11479.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1452bp|location=Sequence derived from alignment at ScGOVlb_3404:515169..516620+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGGCGCATGGGCCAACACCACTCCAACGGAGCGTCTCTTTCTAGA
TGAAGTCGTTCCTCATAATCCCGTCATCATCACGGCGTCAATCACGTTAA
GCAAATGCCCCTCTGAACAATGGATATTCTCCAATCTCATTCCAAGAGTC
CTCGCTCACCCGCGTTTTTCTGCCCGAATCATAGTACCACCTAATGGCAA
GGCAAAGTTTGAAACCATACCAGGTTTTGCAACTCACTCCGAGCAGCTTA
AACAGCACCATGTCGTTATTGAACCCGTCATTGATGTGTCCCTGCCACAC
GATAAACGCGCAAACGCGTTTCAACAGCGCTTATCGCAAATCATATCAGA
GCCGTTTCCGCAACACCGACCTCTTTGGAAAATGTTCTTCTTTCCTATGT
GGTCGATTGCTCCGGAATCACAAGCCAAACAATGTGCAACAATAGTGTTC
CGCGTTCATCATGCCATCGGTGATGGAGTGGGTCTGGTCGAGTTCTTTCT
ATCACATATCATAGACAAGGACGAGGAAAACATTGAACACTTGTGCGTTA
TCCCAAGACGGCATCGACACGCACGCCAACCCGACGTGGCGAGCGCGGCG
CCGCGGAGTGATATACGAGGCAGTCGCGGCGGATGGCTCGCAAATACGAA
GCACGCGCTGGTCGAAAAGTGGATGGCGTTTACGACCAATGTTTACGCAG
TCGTGGGAACTATGGTTCCGGAAGAGGACAATACCTTCGTTAGATCTGGG
ATCCAGGCGAAGAAGGTTTGCGCCTTAATGCCACCCTCAGCAGCGTACAC
GGTTGCAAGCCTGAAGAGCGCTGCACGTTCGCTCGGAATTACAATCAATG
ACATGTTGTACACAGCGGTGTCAGGTGCCACGCGCGCGTACTTGACAGAG
AGTGGTGATGACGTGGATGGGCTCAAAGATTTGCGTTGTGGAGTTCCGTA
CAACCAAAGACTTGACACGGCTGGAGGTGGAGAATTGTCTAACCAATTCG
CGATAATGAGCCTGCCGCTTCACGCGTGTCAGTCGCAGCTGCACGAGCGA
CTGCGGCTGTGCGTCAGAACGATGCGCATCATGAAACGCGGCACGGCAGC
TTTGCTGATAGCTTTTCTACTGAAAATGGTTGCCAGGCTGCCCACAGTGA
TGCGACGTTCGCTTTGGAGACGTCTGACAAGATGCGGCTCATTGGTATTC
ACTAATGTACCTGGGCCGAGACGAGCGGTGTCTGTGGGCGGGATGGAAGT
GTCAGGATTGCACTTTTTCGCGCCATGTGATGGACACTGCGGTGTTGTGG
TGGGGCTTCACTCTTACAACGGGCGGATAAGCATCGGAGTGTATGGGGAT
GAGCAGCGCATCCGTAACCCGCAGCGGTATATGGAATTGTTGGATGAGGA
GATCAAAAAGCTGCTGCAATTGGGTGATGTGAGGTTGATCAGTTCGTGTT
AA

protein sequence of Gvermi11479.t1

>Gvermi11479.t1 ID=Gvermi11479.t1|Name=Gvermi11479.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=484bp
MTGAWANTTPTERLFLDEVVPHNPVIITASITLSKCPSEQWIFSNLIPRV
LAHPRFSARIIVPPNGKAKFETIPGFATHSEQLKQHHVVIEPVIDVSLPH
DKRANAFQQRLSQIISEPFPQHRPLWKMFFFPMWSIAPESQAKQCATIVF
RVHHAIGDGVGLVEFFLSHIIDKDEENIEHLCVIPRRHRHARQPDVASAA
PRSDIRGSRGGWLANTKHALVEKWMAFTTNVYAVVGTMVPEEDNTFVRSG
IQAKKVCALMPPSAAYTVASLKSAARSLGITINDMLYTAVSGATRAYLTE
SGDDVDGLKDLRCGVPYNQRLDTAGGGELSNQFAIMSLPLHACQSQLHER
LRLCVRTMRIMKRGTAALLIAFLLKMVARLPTVMRRSLWRRLTRCGSLVF
TNVPGPRRAVSVGGMEVSGLHFFAPCDGHCGVVVGLHSYNGRISIGVYGD
EQRIRNPQRYMELLDEEIKKLLQLGDVRLISSC*

mRNA from alignment at ScGOVlb_3404:515169..516620+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11479.t1 ID=Gvermi11479.t1|Name=Gvermi11479.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1452bp|location=Sequence derived from alignment at ScGOVlb_3404:515169..516620+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGGGCGCATGGGCCAACACCACTCCAACGGAGCGTCTCTTTCTAGA
TGAAGTCGTTCCTCATAATCCCGTCATCATCACGGCGTCAATCACGTTAA
GCAAATGCCCCTCTGAACAATGGATATTCTCCAATCTCATTCCAAGAGTC
CTCGCTCACCCGCGTTTTTCTGCCCGAATCATAGTACCACCTAATGGCAA
GGCAAAGTTTGAAACCATACCAGGTTTTGCAACTCACTCCGAGCAGCTTA
AACAGCACCATGTCGTTATTGAACCCGTCATTGATGTGTCCCTGCCACAC
GATAAACGCGCAAACGCGTTTCAACAGCGCTTATCGCAAATCATATCAGA
GCCGTTTCCGCAACACCGACCTCTTTGGAAAATGTTCTTCTTTCCTATGT
GGTCGATTGCTCCGGAATCACAAGCCAAACAATGTGCAACAATAGTGTTC
CGCGTTCATCATGCCATCGGTGATGGAGTGGGTCTGGTCGAGTTCTTTCT
ATCACATATCATAGACAAGGACGAGGAAAACATTGAACACTTGTGCGTTA
TCCCAAGACGGCATCGACACGCACGCCAACCCGACGTGGCGAGCGCGGCG
CCGCGGAGTGATATACGAGGCAGTCGCGGCGGATGGCTCGCAAATACGAA
GCACGCGCTGGTCGAAAAGTGGATGGCGTTTACGACCAATGTTTACGCAG
TCGTGGGAACTATGGTTCCGGAAGAGGACAATACCTTCGTTAGATCTGGG
ATCCAGGCGAAGAAGGTTTGCGCCTTAATGCCACCCTCAGCAGCGTACAC
GGTTGCAAGCCTGAAGAGCGCTGCACGTTCGCTCGGAATTACAATCAATG
ACATGTTGTACACAGCGGTGTCAGGTGCCACGCGCGCGTACTTGACAGAG
AGTGGTGATGACGTGGATGGGCTCAAAGATTTGCGTTGTGGAGTTCCGTA
CAACCAAAGACTTGACACGGCTGGAGGTGGAGAATTGTCTAACCAATTCG
CGATAATGAGCCTGCCGCTTCACGCGTGTCAGTCGCAGCTGCACGAGCGA
CTGCGGCTGTGCGTCAGAACGATGCGCATCATGAAACGCGGCACGGCAGC
TTTGCTGATAGCTTTTCTACTGAAAATGGTTGCCAGGCTGCCCACAGTGA
TGCGACGTTCGCTTTGGAGACGTCTGACAAGATGCGGCTCATTGGTATTC
ACTAATGTACCTGGGCCGAGACGAGCGGTGTCTGTGGGCGGGATGGAAGT
GTCAGGATTGCACTTTTTCGCGCCATGTGATGGACACTGCGGTGTTGTGG
TGGGGCTTCACTCTTACAACGGGCGGATAAGCATCGGAGTGTATGGGGAT
GAGCAGCGCATCCGTAACCCGCAGCGGTATATGGAATTGTTGGATGAGGA
GATCAAAAAGCTGCTGCAATTGGGTGATGTGAGGTTGATCAGTTCGTGTT
AA

Coding sequence (CDS) from alignment at ScGOVlb_3404:515169..516620+

>Gvermi11479.t1 ID=Gvermi11479.t1|Name=Gvermi11479.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1452bp|location=Sequence derived from alignment at ScGOVlb_3404:515169..516620+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGGGCGCATGGGCCAACACCACTCCAACGGAGCGTCTCTTTCTAGA
TGAAGTCGTTCCTCATAATCCCGTCATCATCACGGCGTCAATCACGTTAA
GCAAATGCCCCTCTGAACAATGGATATTCTCCAATCTCATTCCAAGAGTC
CTCGCTCACCCGCGTTTTTCTGCCCGAATCATAGTACCACCTAATGGCAA
GGCAAAGTTTGAAACCATACCAGGTTTTGCAACTCACTCCGAGCAGCTTA
AACAGCACCATGTCGTTATTGAACCCGTCATTGATGTGTCCCTGCCACAC
GATAAACGCGCAAACGCGTTTCAACAGCGCTTATCGCAAATCATATCAGA
GCCGTTTCCGCAACACCGACCTCTTTGGAAAATGTTCTTCTTTCCTATGT
GGTCGATTGCTCCGGAATCACAAGCCAAACAATGTGCAACAATAGTGTTC
CGCGTTCATCATGCCATCGGTGATGGAGTGGGTCTGGTCGAGTTCTTTCT
ATCACATATCATAGACAAGGACGAGGAAAACATTGAACACTTGTGCGTTA
TCCCAAGACGGCATCGACACGCACGCCAACCCGACGTGGCGAGCGCGGCG
CCGCGGAGTGATATACGAGGCAGTCGCGGCGGATGGCTCGCAAATACGAA
GCACGCGCTGGTCGAAAAGTGGATGGCGTTTACGACCAATGTTTACGCAG
TCGTGGGAACTATGGTTCCGGAAGAGGACAATACCTTCGTTAGATCTGGG
ATCCAGGCGAAGAAGGTTTGCGCCTTAATGCCACCCTCAGCAGCGTACAC
GGTTGCAAGCCTGAAGAGCGCTGCACGTTCGCTCGGAATTACAATCAATG
ACATGTTGTACACAGCGGTGTCAGGTGCCACGCGCGCGTACTTGACAGAG
AGTGGTGATGACGTGGATGGGCTCAAAGATTTGCGTTGTGGAGTTCCGTA
CAACCAAAGACTTGACACGGCTGGAGGTGGAGAATTGTCTAACCAATTCG
CGATAATGAGCCTGCCGCTTCACGCGTGTCAGTCGCAGCTGCACGAGCGA
CTGCGGCTGTGCGTCAGAACGATGCGCATCATGAAACGCGGCACGGCAGC
TTTGCTGATAGCTTTTCTACTGAAAATGGTTGCCAGGCTGCCCACAGTGA
TGCGACGTTCGCTTTGGAGACGTCTGACAAGATGCGGCTCATTGGTATTC
ACTAATGTACCTGGGCCGAGACGAGCGGTGTCTGTGGGCGGGATGGAAGT
GTCAGGATTGCACTTTTTCGCGCCATGTGATGGACACTGCGGTGTTGTGG
TGGGGCTTCACTCTTACAACGGGCGGATAAGCATCGGAGTGTATGGGGAT
GAGCAGCGCATCCGTAACCCGCAGCGGTATATGGAATTGTTGGATGAGGA
GATCAAAAAGCTGCTGCAATTGGGTGATGTGAGGTTGATCAGTTCGTGTT
AA