Gvermi11478.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11478.t1
Unique NameGvermi11478.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length431
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:512201..513493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1278073.MYSTI_01169
PFAMsDUF1298,WES_acyltransf
Max annot lvl1224|Proteobacteria
KEGG rclassRC00004,RC00041
KEGG koko:K00635
KEGG ReactionR02251
KEGG Pathwayko00561,ko01100,map00561,map01100
KEGG ModuleM00089
Evalue7.89e-32
EggNOG OGsCOG1020@1|root,COG1020@2|Bacteria,1N7HY@1224|Proteobacteria
EC2.3.1.20
DescriptionAcyltransferase, ws dgat mgat
COG categoryQ
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11478Gvermi11478Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 512201..513493 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11478.t1.stop1Gvermi11478.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 512201..512203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11478.t1.CDS1Gvermi11478.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 512201..513493 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11478.t1.exon1Gvermi11478.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 512201..513493 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11478.t1.start1Gvermi11478.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 513491..513493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11478.t1Gvermi11478.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 512201..513493 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11478.t1 ID=Gvermi11478.t1|Name=Gvermi11478.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=431bp
MLDELTPSKQDTITVCFTLSSVLTVQDLQRTILPRFLSHPRFRSTLIKRR
GAYRFQRDALLSADSTQITAYHVAVEPVISPALSEQQQLQAFTSRLDHVM
ATALDKTRPLWRLFVFPKWSLTPETRPSSTTLVLRVHHSISDGIGLVKFF
LSRVIDSADFSAKLSLSRPRRPHRTILRACVETVGDLKKSAMVPFRADPK
TPFTQPKPNGVTHCALLAPRPDIMPKLKLAAKRRGATVNDVLMAAFAGAA
RAYLTELGHNVDALRRFHTAMPFNRHVFDEFRDEDVSNQLAILPVRLPIH
LEDAEERCKSCVHEMNRMKRSLQPHLALVGMRMLTFLPRAARRLAWKRLS
KSASVLFSNVPGPVSTVSVDGVEVQSVYIFPPIDSNTTVNIAIFSYGNGL
FVAVSGDANRLSHPQRMIDHFSTELDAYLA*
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spliced messenger RNA

>Gvermi11478.t1 ID=Gvermi11478.t1|Name=Gvermi11478.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at ScGOVlb_3404:512201..513493- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGATGAACTCACCCCCTCTAAGCAGGACACCATTACCGTCTGTTT
CACCCTCTCTTCCGTTCTCACTGTTCAAGACCTGCAACGCACTATCCTCC
CAAGATTTTTGTCCCATCCCCGCTTTCGTAGCACTCTGATCAAACGTCGA
GGCGCATATCGATTTCAGCGTGATGCTTTACTCTCAGCCGACTCCACTCA
AATTACTGCTTACCACGTCGCTGTCGAGCCCGTCATATCCCCTGCTTTGT
CTGAGCAACAACAACTCCAAGCATTTACGTCGCGTCTCGATCACGTCATG
GCAACCGCTTTGGACAAAACTCGTCCTTTGTGGAGGCTATTTGTATTCCC
AAAATGGTCCCTCACTCCTGAAACCCGGCCAAGCAGCACCACTCTCGTAC
TTCGAGTGCACCATTCCATCTCTGACGGAATCGGTCTGGTAAAGTTTTTT
CTTTCTCGAGTTATTGACTCAGCCGACTTCTCGGCCAAACTGTCGTTGTC
AAGGCCGCGGCGTCCGCATCGCACCATTCTTCGCGCTTGCGTTGAAACCG
TGGGTGATCTAAAGAAATCTGCTATGGTCCCATTCCGCGCAGATCCCAAG
ACGCCTTTCACGCAGCCCAAGCCGAACGGTGTCACTCATTGCGCACTGCT
TGCGCCTCGACCTGACATCATGCCAAAGTTGAAGCTTGCGGCGAAGCGGA
GAGGTGCAACCGTAAACGATGTCTTGATGGCCGCTTTTGCAGGTGCCGCA
CGTGCGTACTTGACAGAGCTGGGTCACAACGTCGACGCACTTCGAAGGTT
TCACACTGCCATGCCGTTCAACAGGCACGTCTTTGACGAGTTTCGAGACG
AAGATGTATCTAATCAGCTCGCAATTTTGCCTGTGCGCCTGCCAATTCAT
CTGGAAGATGCGGAGGAACGTTGCAAATCATGTGTACATGAGATGAACCG
AATGAAACGAAGCTTGCAGCCGCATTTGGCGTTGGTCGGAATGCGCATGC
TCACATTTCTACCACGTGCAGCCAGGCGGTTGGCTTGGAAACGTCTGAGT
AAGTCCGCAAGTGTGTTGTTTTCGAACGTACCTGGCCCTGTATCTACAGT
TTCTGTGGACGGAGTGGAGGTTCAAAGTGTATATATATTTCCTCCGATTG
ATTCGAACACTACTGTGAATATCGCTATATTCTCCTACGGAAACGGGTTG
TTTGTCGCCGTTTCTGGAGATGCAAATAGATTGTCACATCCACAGAGGAT
GATTGACCATTTTAGTACCGAACTCGATGCTTACTTGGCATGA
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protein sequence of Gvermi11478.t1

>Gvermi11478.t1 ID=Gvermi11478.t1|Name=Gvermi11478.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=431bp
MLDELTPSKQDTITVCFTLSSVLTVQDLQRTILPRFLSHPRFRSTLIKRR
GAYRFQRDALLSADSTQITAYHVAVEPVISPALSEQQQLQAFTSRLDHVM
ATALDKTRPLWRLFVFPKWSLTPETRPSSTTLVLRVHHSISDGIGLVKFF
LSRVIDSADFSAKLSLSRPRRPHRTILRACVETVGDLKKSAMVPFRADPK
TPFTQPKPNGVTHCALLAPRPDIMPKLKLAAKRRGATVNDVLMAAFAGAA
RAYLTELGHNVDALRRFHTAMPFNRHVFDEFRDEDVSNQLAILPVRLPIH
LEDAEERCKSCVHEMNRMKRSLQPHLALVGMRMLTFLPRAARRLAWKRLS
KSASVLFSNVPGPVSTVSVDGVEVQSVYIFPPIDSNTTVNIAIFSYGNGL
FVAVSGDANRLSHPQRMIDHFSTELDAYLA*
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mRNA from alignment at ScGOVlb_3404:512201..513493-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11478.t1 ID=Gvermi11478.t1|Name=Gvermi11478.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1293bp|location=Sequence derived from alignment at ScGOVlb_3404:512201..513493- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTGATGAACTCACCCCCTCTAAGCAGGACACCATTACCGTCTGTTT
CACCCTCTCTTCCGTTCTCACTGTTCAAGACCTGCAACGCACTATCCTCC
CAAGATTTTTGTCCCATCCCCGCTTTCGTAGCACTCTGATCAAACGTCGA
GGCGCATATCGATTTCAGCGTGATGCTTTACTCTCAGCCGACTCCACTCA
AATTACTGCTTACCACGTCGCTGTCGAGCCCGTCATATCCCCTGCTTTGT
CTGAGCAACAACAACTCCAAGCATTTACGTCGCGTCTCGATCACGTCATG
GCAACCGCTTTGGACAAAACTCGTCCTTTGTGGAGGCTATTTGTATTCCC
AAAATGGTCCCTCACTCCTGAAACCCGGCCAAGCAGCACCACTCTCGTAC
TTCGAGTGCACCATTCCATCTCTGACGGAATCGGTCTGGTAAAGTTTTTT
CTTTCTCGAGTTATTGACTCAGCCGACTTCTCGGCCAAACTGTCGTTGTC
AAGGCCGCGGCGTCCGCATCGCACCATTCTTCGCGCTTGCGTTGAAACCG
TGGGTGATCTAAAGAAATCTGCTATGGTCCCATTCCGCGCAGATCCCAAG
ACGCCTTTCACGCAGCCCAAGCCGAACGGTGTCACTCATTGCGCACTGCT
TGCGCCTCGACCTGACATCATGCCAAAGTTGAAGCTTGCGGCGAAGCGGA
GAGGTGCAACCGTAAACGATGTCTTGATGGCCGCTTTTGCAGGTGCCGCA
CGTGCGTACTTGACAGAGCTGGGTCACAACGTCGACGCACTTCGAAGGTT
TCACACTGCCATGCCGTTCAACAGGCACGTCTTTGACGAGTTTCGAGACG
AAGATGTATCTAATCAGCTCGCAATTTTGCCTGTGCGCCTGCCAATTCAT
CTGGAAGATGCGGAGGAACGTTGCAAATCATGTGTACATGAGATGAACCG
AATGAAACGAAGCTTGCAGCCGCATTTGGCGTTGGTCGGAATGCGCATGC
TCACATTTCTACCACGTGCAGCCAGGCGGTTGGCTTGGAAACGTCTGAGT
AAGTCCGCAAGTGTGTTGTTTTCGAACGTACCTGGCCCTGTATCTACAGT
TTCTGTGGACGGAGTGGAGGTTCAAAGTGTATATATATTTCCTCCGATTG
ATTCGAACACTACTGTGAATATCGCTATATTCTCCTACGGAAACGGGTTG
TTTGTCGCCGTTTCTGGAGATGCAAATAGATTGTCACATCCACAGAGGAT
GATTGACCATTTTAGTACCGAACTCGATGCTTACTTGGCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:512201..513493-

>Gvermi11478.t1 ID=Gvermi11478.t1|Name=Gvermi11478.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1293bp|location=Sequence derived from alignment at ScGOVlb_3404:512201..513493- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTGATGAACTCACCCCCTCTAAGCAGGACACCATTACCGTCTGTTT
CACCCTCTCTTCCGTTCTCACTGTTCAAGACCTGCAACGCACTATCCTCC
CAAGATTTTTGTCCCATCCCCGCTTTCGTAGCACTCTGATCAAACGTCGA
GGCGCATATCGATTTCAGCGTGATGCTTTACTCTCAGCCGACTCCACTCA
AATTACTGCTTACCACGTCGCTGTCGAGCCCGTCATATCCCCTGCTTTGT
CTGAGCAACAACAACTCCAAGCATTTACGTCGCGTCTCGATCACGTCATG
GCAACCGCTTTGGACAAAACTCGTCCTTTGTGGAGGCTATTTGTATTCCC
AAAATGGTCCCTCACTCCTGAAACCCGGCCAAGCAGCACCACTCTCGTAC
TTCGAGTGCACCATTCCATCTCTGACGGAATCGGTCTGGTAAAGTTTTTT
CTTTCTCGAGTTATTGACTCAGCCGACTTCTCGGCCAAACTGTCGTTGTC
AAGGCCGCGGCGTCCGCATCGCACCATTCTTCGCGCTTGCGTTGAAACCG
TGGGTGATCTAAAGAAATCTGCTATGGTCCCATTCCGCGCAGATCCCAAG
ACGCCTTTCACGCAGCCCAAGCCGAACGGTGTCACTCATTGCGCACTGCT
TGCGCCTCGACCTGACATCATGCCAAAGTTGAAGCTTGCGGCGAAGCGGA
GAGGTGCAACCGTAAACGATGTCTTGATGGCCGCTTTTGCAGGTGCCGCA
CGTGCGTACTTGACAGAGCTGGGTCACAACGTCGACGCACTTCGAAGGTT
TCACACTGCCATGCCGTTCAACAGGCACGTCTTTGACGAGTTTCGAGACG
AAGATGTATCTAATCAGCTCGCAATTTTGCCTGTGCGCCTGCCAATTCAT
CTGGAAGATGCGGAGGAACGTTGCAAATCATGTGTACATGAGATGAACCG
AATGAAACGAAGCTTGCAGCCGCATTTGGCGTTGGTCGGAATGCGCATGC
TCACATTTCTACCACGTGCAGCCAGGCGGTTGGCTTGGAAACGTCTGAGT
AAGTCCGCAAGTGTGTTGTTTTCGAACGTACCTGGCCCTGTATCTACAGT
TTCTGTGGACGGAGTGGAGGTTCAAAGTGTATATATATTTCCTCCGATTG
ATTCGAACACTACTGTGAATATCGCTATATTCTCCTACGGAAACGGGTTG
TTTGTCGCCGTTTCTGGAGATGCAAATAGATTGTCACATCCACAGAGGAT
GATTGACCATTTTAGTACCGAACTCGATGCTTACTTGGCATGA
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