Gvermi11476.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11476.t1
Unique NameGvermi11476.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length207
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:504226..504846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109871.XP_006677726.1
PFAMsMaf
Max annot lvl4751|Fungi
Evalue3.52e-51
EggNOG OGsCOG0424@1|root,KOG1509@2759|Eukaryota,3A5UJ@33154|Opisthokonta,3PF9V@4751|Fungi
DescriptionMaf-like protein
COG categoryD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11476Gvermi11476Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 504226..504846 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11476.t1.start1Gvermi11476.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 504226..504228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11476.t1.CDS1Gvermi11476.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 504226..504846 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11476.t1.exon1Gvermi11476.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 504226..504846 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11476.t1.stop1Gvermi11476.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 504844..504846 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11476.t1Gvermi11476.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 504226..504846 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11476.t1 ID=Gvermi11476.t1|Name=Gvermi11476.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=207bp
MASGSGKPVVILGTSSSTRHKLFQKNFPTPFLTMVPDIDEKAISVGTADR
SQSDPKALSLKIANAKADALKQMLPPNAILITSDQVLLHGGKIREKPRSV
EECRQYLKSYARNPATTITAIVIHNSDTNHRISGVDTCTQHFRTIPDQVI
EQLLQKGHVLHSAGGITVEDELLEPYLSIRQGDLDSFMGLPIRLLRRLLS
EIGIRL*
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spliced messenger RNA

>Gvermi11476.t1 ID=Gvermi11476.t1|Name=Gvermi11476.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=621bp|location=Sequence derived from alignment at ScGOVlb_3404:504226..504846+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCAGGTTCCGGGAAGCCTGTCGTAATCCTCGGCACCTCTTCTTC
CACCCGCCACAAGCTGTTCCAAAAAAATTTCCCCACCCCGTTCTTAACAA
TGGTTCCAGACATCGACGAGAAGGCTATCTCCGTCGGCACTGCAGATCGC
AGTCAGTCCGATCCCAAGGCACTGTCGCTAAAGATTGCAAACGCAAAAGC
TGATGCTTTAAAACAAATGCTACCTCCAAATGCTATTCTAATCACCTCCG
ATCAGGTGCTCTTGCACGGTGGAAAGATCCGTGAGAAGCCACGCTCTGTC
GAAGAATGCCGCCAATACCTCAAAAGCTACGCGAGAAACCCGGCCACAAC
CATCACCGCCATTGTCATTCACAACTCTGACACCAACCACAGAATAAGCG
GCGTCGACACTTGCACACAACATTTCCGCACCATTCCGGACCAGGTTATC
GAGCAACTGCTGCAAAAAGGGCATGTGCTTCACAGTGCGGGTGGCATTAC
CGTCGAGGACGAATTGCTCGAGCCTTACCTTTCCATTCGCCAAGGTGACT
TGGACAGCTTCATGGGACTTCCCATTCGACTCTTGCGTCGACTTCTGTCC
GAGATAGGAATTCGTCTCTGA
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protein sequence of Gvermi11476.t1

>Gvermi11476.t1 ID=Gvermi11476.t1|Name=Gvermi11476.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=207bp
MASGSGKPVVILGTSSSTRHKLFQKNFPTPFLTMVPDIDEKAISVGTADR
SQSDPKALSLKIANAKADALKQMLPPNAILITSDQVLLHGGKIREKPRSV
EECRQYLKSYARNPATTITAIVIHNSDTNHRISGVDTCTQHFRTIPDQVI
EQLLQKGHVLHSAGGITVEDELLEPYLSIRQGDLDSFMGLPIRLLRRLLS
EIGIRL*
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mRNA from alignment at ScGOVlb_3404:504226..504846+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11476.t1 ID=Gvermi11476.t1|Name=Gvermi11476.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=621bp|location=Sequence derived from alignment at ScGOVlb_3404:504226..504846+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTCAGGTTCCGGGAAGCCTGTCGTAATCCTCGGCACCTCTTCTTC
CACCCGCCACAAGCTGTTCCAAAAAAATTTCCCCACCCCGTTCTTAACAA
TGGTTCCAGACATCGACGAGAAGGCTATCTCCGTCGGCACTGCAGATCGC
AGTCAGTCCGATCCCAAGGCACTGTCGCTAAAGATTGCAAACGCAAAAGC
TGATGCTTTAAAACAAATGCTACCTCCAAATGCTATTCTAATCACCTCCG
ATCAGGTGCTCTTGCACGGTGGAAAGATCCGTGAGAAGCCACGCTCTGTC
GAAGAATGCCGCCAATACCTCAAAAGCTACGCGAGAAACCCGGCCACAAC
CATCACCGCCATTGTCATTCACAACTCTGACACCAACCACAGAATAAGCG
GCGTCGACACTTGCACACAACATTTCCGCACCATTCCGGACCAGGTTATC
GAGCAACTGCTGCAAAAAGGGCATGTGCTTCACAGTGCGGGTGGCATTAC
CGTCGAGGACGAATTGCTCGAGCCTTACCTTTCCATTCGCCAAGGTGACT
TGGACAGCTTCATGGGACTTCCCATTCGACTCTTGCGTCGACTTCTGTCC
GAGATAGGAATTCGTCTCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:504226..504846+

>Gvermi11476.t1 ID=Gvermi11476.t1|Name=Gvermi11476.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=621bp|location=Sequence derived from alignment at ScGOVlb_3404:504226..504846+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGTCAGGTTCCGGGAAGCCTGTCGTAATCCTCGGCACCTCTTCTTC
CACCCGCCACAAGCTGTTCCAAAAAAATTTCCCCACCCCGTTCTTAACAA
TGGTTCCAGACATCGACGAGAAGGCTATCTCCGTCGGCACTGCAGATCGC
AGTCAGTCCGATCCCAAGGCACTGTCGCTAAAGATTGCAAACGCAAAAGC
TGATGCTTTAAAACAAATGCTACCTCCAAATGCTATTCTAATCACCTCCG
ATCAGGTGCTCTTGCACGGTGGAAAGATCCGTGAGAAGCCACGCTCTGTC
GAAGAATGCCGCCAATACCTCAAAAGCTACGCGAGAAACCCGGCCACAAC
CATCACCGCCATTGTCATTCACAACTCTGACACCAACCACAGAATAAGCG
GCGTCGACACTTGCACACAACATTTCCGCACCATTCCGGACCAGGTTATC
GAGCAACTGCTGCAAAAAGGGCATGTGCTTCACAGTGCGGGTGGCATTAC
CGTCGAGGACGAATTGCTCGAGCCTTACCTTTCCATTCGCCAAGGTGACT
TGGACAGCTTCATGGGACTTCCCATTCGACTCTTGCGTCGACTTCTGTCC
GAGATAGGAATTCGTCTCTGA
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