Gvermi11474.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11474.t1
Unique NameGvermi11474.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:500527..501424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707552.1
PFAMsMpv17_PMP22
Max annot lvl2759|Eukaryota
KEGG koko:K13347,ko:K13348
KEGG Pathwayko04146,map04146
Evalue5.12e-64
EggNOG OGsKOG1944@1|root,KOG1944@2759|Eukaryota
DescriptionBelongs to the peroxisomal membrane protein PXMP2 4 family
COG categoryC
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11474Gvermi11474Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 500527..501424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11474.t1Gvermi11474.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 500527..501424 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11474.t1.start1Gvermi11474.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 500527..500529 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11474.t1.CDS1Gvermi11474.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 500527..501198 +
Gvermi11474.t1.CDS2Gvermi11474.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 501305..501424 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11474.t1.exon1Gvermi11474.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 500527..501198 +
Gvermi11474.t1.exon2Gvermi11474.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 501305..501424 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11474.t1.intron1Gvermi11474.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 501199..501304 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11474.t1.stop1Gvermi11474.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 501422..501424 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11474.t1 ID=Gvermi11474.t1|Name=Gvermi11474.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=264bp
MSIAFITPVLPVQAKTKTCASSRVSPAMLQFRTPRNPFKFDGGNGSGRFS
GGGNPFGGNTGSGFGSGRGSNNRRGPSGGGAADNSGNIFTSLWASYNSSL
EKNPIVTKAFTSLIGFFLGDFLAQKFLGEKDAEIDRARLARMASFGFLIH
GPTGHYFYSALDRVIVGASPLKVATKVIVDQVLWAPIFTALFFGYLGVAE
RKTVEQIKNKVKNDTWKGVKASWKFWPLAHTINFAFIPTSQRLLYINTLQ
VGYNMILSLLGNK*
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spliced messenger RNA

>Gvermi11474.t1 ID=Gvermi11474.t1|Name=Gvermi11474.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=792bp|location=Sequence derived from alignment at ScGOVlb_3404:500527..501424+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCATAGCGTTCATTACACCTGTTCTCCCCGTTCAGGCGAAGACGAA
GACATGCGCGTCTTCCAGAGTATCCCCGGCAATGCTCCAATTCCGCACGC
CGCGTAATCCGTTCAAGTTTGACGGCGGAAACGGTTCAGGTCGCTTCTCC
GGTGGCGGAAATCCATTTGGAGGAAACACGGGATCCGGCTTCGGTTCCGG
TCGGGGTTCTAACAATCGTCGTGGTCCTAGCGGCGGCGGTGCTGCTGATA
ATTCTGGAAATATCTTTACTTCCTTGTGGGCGTCATACAACTCCTCACTG
GAAAAGAATCCCATTGTGACTAAGGCATTCACCTCTTTAATAGGTTTCTT
CCTTGGCGACTTTCTTGCGCAGAAGTTCCTTGGCGAAAAAGATGCCGAAA
TCGACAGGGCCCGCTTGGCCAGAATGGCGAGCTTCGGTTTCCTCATTCAT
GGCCCCACTGGACATTACTTTTACTCTGCTCTAGATAGGGTGATAGTCGG
AGCTTCTCCGCTGAAGGTTGCAACGAAGGTTATCGTCGACCAGGTTTTGT
GGGCACCCATCTTCACAGCGCTGTTCTTCGGATACTTGGGCGTCGCTGAG
CGTAAGACAGTGGAACAAATCAAAAACAAAGTGAAGAACGACACCTGGAA
AGGAGTGAAGGCAAGCTGGAAGTTCTGGCCCTTGGCTCATACCATCAATT
TCGCATTCATTCCCACTTCTCAAAGGCTGTTGTACATCAACACTTTACAG
GTTGGTTACAACATGATCCTCAGTCTCTTGGGCAATAAGTAA
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protein sequence of Gvermi11474.t1

>Gvermi11474.t1 ID=Gvermi11474.t1|Name=Gvermi11474.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=264bp
MSIAFITPVLPVQAKTKTCASSRVSPAMLQFRTPRNPFKFDGGNGSGRFS
GGGNPFGGNTGSGFGSGRGSNNRRGPSGGGAADNSGNIFTSLWASYNSSL
EKNPIVTKAFTSLIGFFLGDFLAQKFLGEKDAEIDRARLARMASFGFLIH
GPTGHYFYSALDRVIVGASPLKVATKVIVDQVLWAPIFTALFFGYLGVAE
RKTVEQIKNKVKNDTWKGVKASWKFWPLAHTINFAFIPTSQRLLYINTLQ
VGYNMILSLLGNK*
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mRNA from alignment at ScGOVlb_3404:500527..501424+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11474.t1 ID=Gvermi11474.t1|Name=Gvermi11474.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=898bp|location=Sequence derived from alignment at ScGOVlb_3404:500527..501424+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCATAGCGTTCATTACACCTGTTCTCCCCGTTCAGGCGAAGACGAA
GACATGCGCGTCTTCCAGAGTATCCCCGGCAATGCTCCAATTCCGCACGC
CGCGTAATCCGTTCAAGTTTGACGGCGGAAACGGTTCAGGTCGCTTCTCC
GGTGGCGGAAATCCATTTGGAGGAAACACGGGATCCGGCTTCGGTTCCGG
TCGGGGTTCTAACAATCGTCGTGGTCCTAGCGGCGGCGGTGCTGCTGATA
ATTCTGGAAATATCTTTACTTCCTTGTGGGCGTCATACAACTCCTCACTG
GAAAAGAATCCCATTGTGACTAAGGCATTCACCTCTTTAATAGGTTTCTT
CCTTGGCGACTTTCTTGCGCAGAAGTTCCTTGGCGAAAAAGATGCCGAAA
TCGACAGGGCCCGCTTGGCCAGAATGGCGAGCTTCGGTTTCCTCATTCAT
GGCCCCACTGGACATTACTTTTACTCTGCTCTAGATAGGGTGATAGTCGG
AGCTTCTCCGCTGAAGGTTGCAACGAAGGTTATCGTCGACCAGGTTTTGT
GGGCACCCATCTTCACAGCGCTGTTCTTCGGATACTTGGGCGTCGCTGAG
CGTAAGACAGTGGAACAAATCAAAAACAAAGTGAAGAACGACACCTGGAA
AGGAGTGAAGGCAAGCTGGAAGGTACGTCCACCACATTCAAGAAATACTG
ATTCTCCGTTCCCTATTCTCCCAAATGTCTCACAATCTAACAAATTATGT
TCTCTATTAATACTTCATACCTGCATAGTTCTGGCCCTTGGCTCATACCA
TCAATTTCGCATTCATTCCCACTTCTCAAAGGCTGTTGTACATCAACACT
TTACAGGTTGGTTACAACATGATCCTCAGTCTCTTGGGCAATAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:500527..501424+

>Gvermi11474.t1 ID=Gvermi11474.t1|Name=Gvermi11474.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=792bp|location=Sequence derived from alignment at ScGOVlb_3404:500527..501424+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCATAGCGTTCATTACACCTGTTCTCCCCGTTCAGGCGAAGACGAA
GACATGCGCGTCTTCCAGAGTATCCCCGGCAATGCTCCAATTCCGCACGC
CGCGTAATCCGTTCAAGTTTGACGGCGGAAACGGTTCAGGTCGCTTCTCC
GGTGGCGGAAATCCATTTGGAGGAAACACGGGATCCGGCTTCGGTTCCGG
TCGGGGTTCTAACAATCGTCGTGGTCCTAGCGGCGGCGGTGCTGCTGATA
ATTCTGGAAATATCTTTACTTCCTTGTGGGCGTCATACAACTCCTCACTG
GAAAAGAATCCCATTGTGACTAAGGCATTCACCTCTTTAATAGGTTTCTT
CCTTGGCGACTTTCTTGCGCAGAAGTTCCTTGGCGAAAAAGATGCCGAAA
TCGACAGGGCCCGCTTGGCCAGAATGGCGAGCTTCGGTTTCCTCATTCAT
GGCCCCACTGGACATTACTTTTACTCTGCTCTAGATAGGGTGATAGTCGG
AGCTTCTCCGCTGAAGGTTGCAACGAAGGTTATCGTCGACCAGGTTTTGT
GGGCACCCATCTTCACAGCGCTGTTCTTCGGATACTTGGGCGTCGCTGAG
CGTAAGACAGTGGAACAAATCAAAAACAAAGTGAAGAACGACACCTGGAA
AGGAGTGAAGGCAAGCTGGAAGTTCTGGCCCTTGGCTCATACCATCAATT
TCGCATTCATTCCCACTTCTCAAAGGCTGTTGTACATCAACACTTTACAG
GTTGGTTACAACATGATCCTCAGTCTCTTGGGCAATAAGTAA
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