Gvermi11467.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11467.t1
Unique NameGvermi11467.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length593
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:477774..479705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1250278.JQNQ01000001_gene687
PFAMsHe_PIG,Kelch_1,Kelch_3,Kelch_4,Kelch_6,Malectin,PKD
Max annot lvl976|Bacteroidetes
Evalue1.3e-53
EggNOG OGsCOG3055@1|root,COG3055@2|Bacteria,4NHHD@976|Bacteroidetes,1HZ82@117743|Flavobacteriia
DescriptionKelch
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11467Gvermi11467Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 477774..479705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11467.t1Gvermi11467.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 477774..479705 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11467.t1.stop1Gvermi11467.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 477774..477776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11467.t1.CDS1Gvermi11467.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 477774..478384 -
Gvermi11467.t1.CDS2Gvermi11467.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 478452..479075 -
Gvermi11467.t1.CDS3Gvermi11467.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 479162..479705 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11467.t1.exon1Gvermi11467.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 477774..478384 -
Gvermi11467.t1.exon2Gvermi11467.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 478452..479075 -
Gvermi11467.t1.exon3Gvermi11467.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 479162..479705 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11467.t1.intron1Gvermi11467.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 478385..478451 -
Gvermi11467.t1.intron2Gvermi11467.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 479076..479161 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11467.t1.start1Gvermi11467.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 479703..479705 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11467.t1 ID=Gvermi11467.t1|Name=Gvermi11467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=593bp
MRSAYQLVVLFYLATSSSAALSWKKVPVSGSYPGRGETSLSLCAGNKICL
LGGRGANRVHILDTQTRQWQPAQSNSLEMHHFQAFQGPDNCVWVAGAWTG
GFPTESTVDNIWRYCPDSDQWFKDDVIDRPRGSGGAFFHDGKVYLVTGNV
GGHREGAKVVPWFDSYDPATGKWERLPDMPNPRDHCNAVVKDNKVYVTGG
RRSTSDFPEFFDDTVAEVDVYDFGSGKWSTLTELSRPRGGTASAVLDGTI
YVMGGEGDNRAWTEVDVLKGSSFQPGPSLPEPRHGTGIVACNGAIWIAGG
ERVLGAGNPATDTYALYNGDKVPVCGSSSAPTVTATAAPSTTTNAPATQD
PSPVSTPAEQSESEPSAPNDTSSGAVGADDLDASSTPSNPSSPSAEEPAP
AESSAESTNSTPACFPSDATVELEDGSMKVMSSLRIGDRVKVAHPNEYSE
IYFFSHNHAHKQSEFVVIRTSMEGISLTLSPGHLVYANGKLMKASRVRVG
DMVSISHDAKIAAVSEVSTIWATGLHNPHTVHGDIVVNGVLTSTFTSAIK
PTIAKLLLVPMRMVYSILKSAERMEIVNRAVLRTLDVAYWRS*
back to top

spliced messenger RNA

>Gvermi11467.t1 ID=Gvermi11467.t1|Name=Gvermi11467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1779bp|location=Sequence derived from alignment at ScGOVlb_3404:477774..479705- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTCTGCATACCAATTGGTTGTGCTATTTTACCTCGCCACATCTTC
TTCAGCCGCGTTATCTTGGAAAAAAGTCCCCGTATCTGGTAGTTACCCGG
GTCGCGGTGAAACCTCTCTCTCTTTGTGCGCCGGCAATAAAATATGTCTT
CTGGGTGGACGCGGCGCCAATCGTGTTCATATCCTTGATACGCAAACGCG
TCAATGGCAACCTGCGCAGTCTAATTCTTTGGAGATGCATCACTTCCAAG
CCTTTCAAGGTCCTGATAACTGCGTATGGGTAGCGGGCGCCTGGACCGGG
GGCTTTCCCACAGAATCTACTGTTGACAACATTTGGCGATATTGTCCGGA
TTCGGACCAGTGGTTTAAGGATGATGTCATTGACCGTCCGAGAGGTTCTG
GGGGTGCATTCTTCCATGATGGAAAGGTATATCTCGTTACCGGTAACGTT
GGCGGTCATCGTGAGGGTGCCAAGGTTGTCCCCTGGTTCGATTCATATGA
CCCTGCCACCGGCAAATGGGAAAGGCTCCCCGATATGCCCAACCCCCGTG
ATCATTGTAATGCTGTGGTGAAGGACAATAAGGTTTACGTCACCGGTGGT
CGTCGCTCAACGTCTGACTTTCCAGAATTTTTTGACGACACCGTTGCAGA
GGTTGACGTGTATGACTTCGGTTCTGGCAAGTGGAGCACTTTAACAGAGC
TTTCCCGTCCGCGTGGAGGCACCGCCTCTGCTGTGCTAGATGGGACAATA
TATGTTATGGGCGGCGAGGGCGACAACCGAGCGTGGACTGAGGTTGATGT
GCTCAAAGGCTCTTCTTTCCAGCCAGGTCCCTCTCTTCCAGAACCTCGCC
ACGGAACGGGAATCGTTGCATGCAACGGAGCTATCTGGATCGCTGGTGGC
GAGCGTGTTTTGGGCGCAGGGAATCCCGCCACTGACACGTACGCTCTATA
TAACGGTGACAAGGTGCCGGTCTGTGGCAGCAGCTCCGCACCCACTGTTA
CGGCCACTGCTGCGCCTAGCACTACAACCAATGCCCCCGCCACTCAAGAT
CCCTCGCCTGTTTCCACTCCAGCAGAGCAGAGCGAGAGCGAGCCTTCTGC
TCCCAATGATACTTCTAGTGGAGCTGTTGGGGCGGACGACCTCGATGCCA
GCAGCACACCATCAAATCCATCATCACCTTCAGCAGAAGAACCTGCTCCC
GCTGAGAGCTCCGCGGAAAGCACCAATAGTACTCCTGCCTGTTTCCCCTC
TGATGCCACCGTAGAGCTAGAAGACGGGTCCATGAAGGTGATGAGTTCAT
TACGCATCGGCGATCGCGTGAAGGTTGCTCATCCCAATGAGTACAGTGAG
ATATACTTCTTTTCACACAATCATGCCCACAAGCAATCCGAGTTTGTTGT
TATCAGAACATCAATGGAAGGCATTTCTTTGACTTTGTCACCGGGACACT
TAGTGTACGCCAACGGAAAGTTGATGAAGGCGTCGCGAGTACGGGTTGGT
GATATGGTTTCCATATCACATGACGCCAAGATTGCAGCCGTATCCGAAGT
GTCCACGATTTGGGCCACAGGTCTACATAACCCGCACACCGTACATGGAG
ACATCGTTGTGAATGGTGTGCTTACCAGCACGTTCACATCTGCAATTAAG
CCAACTATTGCTAAATTGCTGCTTGTGCCGATGAGGATGGTTTACAGTAT
TTTGAAATCAGCGGAGAGAATGGAAATTGTCAACAGAGCGGTGCTTCGAA
CTTTAGATGTGGCTTATTGGAGAAGTTGA
back to top

protein sequence of Gvermi11467.t1

>Gvermi11467.t1 ID=Gvermi11467.t1|Name=Gvermi11467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=593bp
MRSAYQLVVLFYLATSSSAALSWKKVPVSGSYPGRGETSLSLCAGNKICL
LGGRGANRVHILDTQTRQWQPAQSNSLEMHHFQAFQGPDNCVWVAGAWTG
GFPTESTVDNIWRYCPDSDQWFKDDVIDRPRGSGGAFFHDGKVYLVTGNV
GGHREGAKVVPWFDSYDPATGKWERLPDMPNPRDHCNAVVKDNKVYVTGG
RRSTSDFPEFFDDTVAEVDVYDFGSGKWSTLTELSRPRGGTASAVLDGTI
YVMGGEGDNRAWTEVDVLKGSSFQPGPSLPEPRHGTGIVACNGAIWIAGG
ERVLGAGNPATDTYALYNGDKVPVCGSSSAPTVTATAAPSTTTNAPATQD
PSPVSTPAEQSESEPSAPNDTSSGAVGADDLDASSTPSNPSSPSAEEPAP
AESSAESTNSTPACFPSDATVELEDGSMKVMSSLRIGDRVKVAHPNEYSE
IYFFSHNHAHKQSEFVVIRTSMEGISLTLSPGHLVYANGKLMKASRVRVG
DMVSISHDAKIAAVSEVSTIWATGLHNPHTVHGDIVVNGVLTSTFTSAIK
PTIAKLLLVPMRMVYSILKSAERMEIVNRAVLRTLDVAYWRS*
back to top

mRNA from alignment at ScGOVlb_3404:477774..479705-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11467.t1 ID=Gvermi11467.t1|Name=Gvermi11467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1932bp|location=Sequence derived from alignment at ScGOVlb_3404:477774..479705- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTCTGCATACCAATTGGTTGTGCTATTTTACCTCGCCACATCTTC
TTCAGCCGCGTTATCTTGGAAAAAAGTCCCCGTATCTGGTAGTTACCCGG
GTCGCGGTGAAACCTCTCTCTCTTTGTGCGCCGGCAATAAAATATGTCTT
CTGGGTGGACGCGGCGCCAATCGTGTTCATATCCTTGATACGCAAACGCG
TCAATGGCAACCTGCGCAGTCTAATTCTTTGGAGATGCATCACTTCCAAG
CCTTTCAAGGTCCTGATAACTGCGTATGGGTAGCGGGCGCCTGGACCGGG
GGCTTTCCCACAGAATCTACTGTTGACAACATTTGGCGATATTGTCCGGA
TTCGGACCAGTGGTTTAAGGATGATGTCATTGACCGTCCGAGAGGTTCTG
GGGGTGCATTCTTCCATGATGGAAAGGTATATCTCGTTACCGGTAACGTT
GGCGGTCATCGTGAGGGTGCCAAGGTTGTCCCCTGGTTCGATTCATATGA
CCCTGCCACCGGCAAATGGGAAAGGCTCCCCGATATGCCCAACCGTAAGT
TGAAAGCCGCGTCGCTTCGCCTATCTCTTAAAAAAATCTCGCGCATTTCT
TCTAACCGGTTGTTCATTTAAACGACGAAGCCCGTGATCATTGTAATGCT
GTGGTGAAGGACAATAAGGTTTACGTCACCGGTGGTCGTCGCTCAACGTC
TGACTTTCCAGAATTTTTTGACGACACCGTTGCAGAGGTTGACGTGTATG
ACTTCGGTTCTGGCAAGTGGAGCACTTTAACAGAGCTTTCCCGTCCGCGT
GGAGGCACCGCCTCTGCTGTGCTAGATGGGACAATATATGTTATGGGCGG
CGAGGGCGACAACCGAGCGTGGACTGAGGTTGATGTGCTCAAAGGCTCTT
CTTTCCAGCCAGGTCCCTCTCTTCCAGAACCTCGCCACGGAACGGGAATC
GTTGCATGCAACGGAGCTATCTGGATCGCTGGTGGCGAGCGTGTTTTGGG
CGCAGGGAATCCCGCCACTGACACGTACGCTCTATATAACGGTGACAAGG
TGCCGGTCTGTGGCAGCAGCTCCGCACCCACTGTTACGGCCACTGCTGCG
CCTAGCACTACAACCAATGCCCCCGCCACTCAAGATCCCTCGCCTGTTTC
CACTCCAGCAGAGCAGAGCGAGAGCGAGCCTTCTGCTCCCAATGATACTT
CTAGTGGAGCTGTTGGGGCGGACGACCTCGATGCCAGCAGCACACCATCA
AATCGTAAGTATTTCCTCGCACAAATTGCTTCAAATCCGCATCTAACCCC
GTATTCTCTCCTTTCGCGCAGCATCATCACCTTCAGCAGAAGAACCTGCT
CCCGCTGAGAGCTCCGCGGAAAGCACCAATAGTACTCCTGCCTGTTTCCC
CTCTGATGCCACCGTAGAGCTAGAAGACGGGTCCATGAAGGTGATGAGTT
CATTACGCATCGGCGATCGCGTGAAGGTTGCTCATCCCAATGAGTACAGT
GAGATATACTTCTTTTCACACAATCATGCCCACAAGCAATCCGAGTTTGT
TGTTATCAGAACATCAATGGAAGGCATTTCTTTGACTTTGTCACCGGGAC
ACTTAGTGTACGCCAACGGAAAGTTGATGAAGGCGTCGCGAGTACGGGTT
GGTGATATGGTTTCCATATCACATGACGCCAAGATTGCAGCCGTATCCGA
AGTGTCCACGATTTGGGCCACAGGTCTACATAACCCGCACACCGTACATG
GAGACATCGTTGTGAATGGTGTGCTTACCAGCACGTTCACATCTGCAATT
AAGCCAACTATTGCTAAATTGCTGCTTGTGCCGATGAGGATGGTTTACAG
TATTTTGAAATCAGCGGAGAGAATGGAAATTGTCAACAGAGCGGTGCTTC
GAACTTTAGATGTGGCTTATTGGAGAAGTTGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:477774..479705-

>Gvermi11467.t1 ID=Gvermi11467.t1|Name=Gvermi11467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1779bp|location=Sequence derived from alignment at ScGOVlb_3404:477774..479705- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCTCTGCATACCAATTGGTTGTGCTATTTTACCTCGCCACATCTTC
TTCAGCCGCGTTATCTTGGAAAAAAGTCCCCGTATCTGGTAGTTACCCGG
GTCGCGGTGAAACCTCTCTCTCTTTGTGCGCCGGCAATAAAATATGTCTT
CTGGGTGGACGCGGCGCCAATCGTGTTCATATCCTTGATACGCAAACGCG
TCAATGGCAACCTGCGCAGTCTAATTCTTTGGAGATGCATCACTTCCAAG
CCTTTCAAGGTCCTGATAACTGCGTATGGGTAGCGGGCGCCTGGACCGGG
GGCTTTCCCACAGAATCTACTGTTGACAACATTTGGCGATATTGTCCGGA
TTCGGACCAGTGGTTTAAGGATGATGTCATTGACCGTCCGAGAGGTTCTG
GGGGTGCATTCTTCCATGATGGAAAGGTATATCTCGTTACCGGTAACGTT
GGCGGTCATCGTGAGGGTGCCAAGGTTGTCCCCTGGTTCGATTCATATGA
CCCTGCCACCGGCAAATGGGAAAGGCTCCCCGATATGCCCAACCCCCGTG
ATCATTGTAATGCTGTGGTGAAGGACAATAAGGTTTACGTCACCGGTGGT
CGTCGCTCAACGTCTGACTTTCCAGAATTTTTTGACGACACCGTTGCAGA
GGTTGACGTGTATGACTTCGGTTCTGGCAAGTGGAGCACTTTAACAGAGC
TTTCCCGTCCGCGTGGAGGCACCGCCTCTGCTGTGCTAGATGGGACAATA
TATGTTATGGGCGGCGAGGGCGACAACCGAGCGTGGACTGAGGTTGATGT
GCTCAAAGGCTCTTCTTTCCAGCCAGGTCCCTCTCTTCCAGAACCTCGCC
ACGGAACGGGAATCGTTGCATGCAACGGAGCTATCTGGATCGCTGGTGGC
GAGCGTGTTTTGGGCGCAGGGAATCCCGCCACTGACACGTACGCTCTATA
TAACGGTGACAAGGTGCCGGTCTGTGGCAGCAGCTCCGCACCCACTGTTA
CGGCCACTGCTGCGCCTAGCACTACAACCAATGCCCCCGCCACTCAAGAT
CCCTCGCCTGTTTCCACTCCAGCAGAGCAGAGCGAGAGCGAGCCTTCTGC
TCCCAATGATACTTCTAGTGGAGCTGTTGGGGCGGACGACCTCGATGCCA
GCAGCACACCATCAAATCCATCATCACCTTCAGCAGAAGAACCTGCTCCC
GCTGAGAGCTCCGCGGAAAGCACCAATAGTACTCCTGCCTGTTTCCCCTC
TGATGCCACCGTAGAGCTAGAAGACGGGTCCATGAAGGTGATGAGTTCAT
TACGCATCGGCGATCGCGTGAAGGTTGCTCATCCCAATGAGTACAGTGAG
ATATACTTCTTTTCACACAATCATGCCCACAAGCAATCCGAGTTTGTTGT
TATCAGAACATCAATGGAAGGCATTTCTTTGACTTTGTCACCGGGACACT
TAGTGTACGCCAACGGAAAGTTGATGAAGGCGTCGCGAGTACGGGTTGGT
GATATGGTTTCCATATCACATGACGCCAAGATTGCAGCCGTATCCGAAGT
GTCCACGATTTGGGCCACAGGTCTACATAACCCGCACACCGTACATGGAG
ACATCGTTGTGAATGGTGTGCTTACCAGCACGTTCACATCTGCAATTAAG
CCAACTATTGCTAAATTGCTGCTTGTGCCGATGAGGATGGTTTACAGTAT
TTTGAAATCAGCGGAGAGAATGGAAATTGTCAACAGAGCGGTGCTTCGAA
CTTTAGATGTGGCTTATTGGAGAAGTTGA
back to top