Gvermi11466.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11466.t1
Unique NameGvermi11466.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:476648..477442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog9365.XP_007537800.1
Preferred nameSPON2
PFAMsSpond_N,TSP_1
Max annot lvl33208|Metazoa
GOsGO:0000902,GO:0000904,GO:0001530,GO:0001817,GO:0001819,GO:0002237,GO:0002252,GO:0002376,GO:0002443,GO:0002444,GO:0002448,GO:0002682,GO:0002684,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002718,GO:0002720,GO:0003674,GO:0003823,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0006810,GO:0006897,GO:0006909,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0007155,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0008150,GO:0008228,GO:0008289,GO:0009605,GO:0009607,GO:0009615,GO:0009617,GO:0009620,GO:0009653,GO:0009987,GO:0010033,GO:0010830,GO:0010935,GO:0016043,GO:0016192,GO:0019730,GO:0019731,GO:0022008,GO:0022603,GO:0022610,GO:0030030,GO:0030154,GO:0030182,GO:0031012,GO:0031175,GO:0032496,GO:0032501,GO:0032502,GO:0032675,GO:0032680,GO:0032755,GO:0032760,GO:0032989,GO:0032990,GO:0033993,GO:0040011,GO:0042221,GO:0042330,GO:0042742,GO:0043152,GO:0043207,GO:0044421,GO:0045087,GO:0045595,GO:0048468,GO:0048518,GO:0048583,GO:0048584,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0051128,GO:0051147,GO:0051153,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060142,GO:0060907,GO:0061081,GO:0061564,GO:0065007,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071396,GO:0071840,GO:0097367,GO:0097485,GO:0098542,GO:0098657,GO:0120036,GO:0120039,GO:1901700,GO:1901701,GO:1901739,GO:1903555,GO:1903557
Evalue1.18e-09
EggNOG OGsKOG3539@1|root,KOG3539@2759|Eukaryota,38FXI@33154|Opisthokonta,3BHFJ@33208|Metazoa,3CWWR@33213|Bilateria,4842B@7711|Chordata,495NH@7742|Vertebrata,3JF6S@40674|Mammalia
Descriptioninduction of bacterial agglutination
COG categoryW
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11466Gvermi11466Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 476648..477442 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11466.t1.start1Gvermi11466.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 476648..476650 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11466.t1.CDS1Gvermi11466.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 476648..477442 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11466.t1.exon1Gvermi11466.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 476648..477442 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11466.t1.stop1Gvermi11466.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 477440..477442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11466.t1Gvermi11466.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 476648..477442 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11466.t1 ID=Gvermi11466.t1|Name=Gvermi11466.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=265bp
MRLPPCLLPVLLLLLPAVASAACSGEQSYVLSLRMSFTQNINPLIPPRDK
ARIPVVVAVSHKPNYHLFEPAKKLSDAAAEVASAGKADEIKHQFDILRET
GDVHSFRILHDVPIDDISQLQLDVKDSASRISLMAQLSPSPSWFVGVDSF
DLCEQSRFIVERQNIRVRNYNSGLDSSQQFAMSDPFNEGDTLPVELLSAV
ETDTQLATLSVKQGTLGISFWKIILGAVAAAVVVAAIVCVVIPLWRRRNK
ATQIPLTTQEGTEW*
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spliced messenger RNA

>Gvermi11466.t1 ID=Gvermi11466.t1|Name=Gvermi11466.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=795bp|location=Sequence derived from alignment at ScGOVlb_3404:476648..477442+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTTGCCCCCATGCCTTCTTCCTGTTCTTCTACTCCTGCTCCCCGC
CGTGGCAAGCGCCGCCTGCTCAGGTGAACAATCCTATGTACTGTCGCTCC
GAATGTCCTTCACTCAAAACATCAATCCGTTGATCCCGCCCCGCGACAAG
GCCCGTATTCCGGTCGTCGTTGCCGTCTCACACAAGCCCAACTACCATTT
GTTTGAACCCGCTAAGAAGCTCAGTGATGCCGCTGCTGAGGTGGCTTCTG
CGGGAAAGGCTGATGAAATAAAGCACCAGTTTGATATCCTGCGAGAAACT
GGTGACGTACACTCTTTTCGCATCCTTCATGATGTTCCTATCGACGATAT
CTCTCAGCTACAGCTCGACGTCAAGGACTCTGCATCTAGAATATCCCTAA
TGGCCCAGCTCAGTCCCTCTCCATCCTGGTTTGTCGGCGTGGATTCTTTT
GACCTTTGTGAACAATCAAGGTTTATCGTCGAACGCCAGAACATTCGCGT
CAGGAACTACAACTCAGGACTCGACAGCAGCCAGCAGTTTGCCATGTCAG
ATCCTTTCAATGAGGGTGACACACTCCCTGTTGAGTTACTGTCGGCTGTG
GAAACTGATACTCAGTTGGCTACGCTGTCCGTCAAGCAAGGTACCCTCGG
CATTAGTTTTTGGAAGATAATCTTGGGAgctgttgctgctgctgttgtag
ttgctgcCATTGTCTGTGTCGTTATTCCCTTATGGCGGCGAAGGAACAAA
GCTACTCAAATTCCTCTCACCACTCAAGAAGGAACCGAGTGGTAA
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protein sequence of Gvermi11466.t1

>Gvermi11466.t1 ID=Gvermi11466.t1|Name=Gvermi11466.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=265bp
MRLPPCLLPVLLLLLPAVASAACSGEQSYVLSLRMSFTQNINPLIPPRDK
ARIPVVVAVSHKPNYHLFEPAKKLSDAAAEVASAGKADEIKHQFDILRET
GDVHSFRILHDVPIDDISQLQLDVKDSASRISLMAQLSPSPSWFVGVDSF
DLCEQSRFIVERQNIRVRNYNSGLDSSQQFAMSDPFNEGDTLPVELLSAV
ETDTQLATLSVKQGTLGISFWKIILGAVAAAVVVAAIVCVVIPLWRRRNK
ATQIPLTTQEGTEW*
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mRNA from alignment at ScGOVlb_3404:476648..477442+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11466.t1 ID=Gvermi11466.t1|Name=Gvermi11466.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=795bp|location=Sequence derived from alignment at ScGOVlb_3404:476648..477442+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTTTGCCCCCATGCCTTCTTCCTGTTCTTCTACTCCTGCTCCCCGC
CGTGGCAAGCGCCGCCTGCTCAGGTGAACAATCCTATGTACTGTCGCTCC
GAATGTCCTTCACTCAAAACATCAATCCGTTGATCCCGCCCCGCGACAAG
GCCCGTATTCCGGTCGTCGTTGCCGTCTCACACAAGCCCAACTACCATTT
GTTTGAACCCGCTAAGAAGCTCAGTGATGCCGCTGCTGAGGTGGCTTCTG
CGGGAAAGGCTGATGAAATAAAGCACCAGTTTGATATCCTGCGAGAAACT
GGTGACGTACACTCTTTTCGCATCCTTCATGATGTTCCTATCGACGATAT
CTCTCAGCTACAGCTCGACGTCAAGGACTCTGCATCTAGAATATCCCTAA
TGGCCCAGCTCAGTCCCTCTCCATCCTGGTTTGTCGGCGTGGATTCTTTT
GACCTTTGTGAACAATCAAGGTTTATCGTCGAACGCCAGAACATTCGCGT
CAGGAACTACAACTCAGGACTCGACAGCAGCCAGCAGTTTGCCATGTCAG
ATCCTTTCAATGAGGGTGACACACTCCCTGTTGAGTTACTGTCGGCTGTG
GAAACTGATACTCAGTTGGCTACGCTGTCCGTCAAGCAAGGTACCCTCGG
CATTAGTTTTTGGAAGATAATCTTGGGAgctgttgctgctgctgttgtag
ttgctgcCATTGTCTGTGTCGTTATTCCCTTATGGCGGCGAAGGAACAAA
GCTACTCAAATTCCTCTCACCACTCAAGAAGGAACCGAGTGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:476648..477442+

>Gvermi11466.t1 ID=Gvermi11466.t1|Name=Gvermi11466.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=795bp|location=Sequence derived from alignment at ScGOVlb_3404:476648..477442+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTTTGCCCCCATGCCTTCTTCCTGTTCTTCTACTCCTGCTCCCCGC
CGTGGCAAGCGCCGCCTGCTCAGGTGAACAATCCTATGTACTGTCGCTCC
GAATGTCCTTCACTCAAAACATCAATCCGTTGATCCCGCCCCGCGACAAG
GCCCGTATTCCGGTCGTCGTTGCCGTCTCACACAAGCCCAACTACCATTT
GTTTGAACCCGCTAAGAAGCTCAGTGATGCCGCTGCTGAGGTGGCTTCTG
CGGGAAAGGCTGATGAAATAAAGCACCAGTTTGATATCCTGCGAGAAACT
GGTGACGTACACTCTTTTCGCATCCTTCATGATGTTCCTATCGACGATAT
CTCTCAGCTACAGCTCGACGTCAAGGACTCTGCATCTAGAATATCCCTAA
TGGCCCAGCTCAGTCCCTCTCCATCCTGGTTTGTCGGCGTGGATTCTTTT
GACCTTTGTGAACAATCAAGGTTTATCGTCGAACGCCAGAACATTCGCGT
CAGGAACTACAACTCAGGACTCGACAGCAGCCAGCAGTTTGCCATGTCAG
ATCCTTTCAATGAGGGTGACACACTCCCTGTTGAGTTACTGTCGGCTGTG
GAAACTGATACTCAGTTGGCTACGCTGTCCGTCAAGCAAGGTACCCTCGG
CATTAGTTTTTGGAAGATAATCTTGGGAgctgttgctgctgctgttgtag
ttgctgcCATTGTCTGTGTCGTTATTCCCTTATGGCGGCGAAGGAACAAA
GCTACTCAAATTCCTCTCACCACTCAAGAAGGAACCGAGTGGTAA
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