Gvermi11463.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11463.t1
Unique NameGvermi11463.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:470724..471437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11463Gvermi11463Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 470724..471437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11463.t1Gvermi11463.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 470724..471437 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11463.t1.stop1Gvermi11463.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 470724..470726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11463.t1.CDS1Gvermi11463.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 470724..471133 -
Gvermi11463.t1.CDS2Gvermi11463.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 471293..471437 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11463.t1.exon1Gvermi11463.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 470724..471133 -
Gvermi11463.t1.exon2Gvermi11463.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 471293..471437 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11463.t1.intron1Gvermi11463.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 471134..471292 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11463.t1.start1Gvermi11463.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 471435..471437 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11463.t1 ID=Gvermi11463.t1|Name=Gvermi11463.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=185bp
MINHDFVDAVSSRKYFVLYPSAAVGPTPTKHVRQISCVQYGVELQTRYSV
RQLPSDECHAHMTSASSLAIFVVIVSSSSDDTVAFPSKDVFPSHRCIPTI
TNPLTIMSGETKVADVAAQLRQRIPVNKNQFMKFYEWYHRTYFKTGSFAP
VVHVMLGIGIIGYAIEYPHIKHELEEHKKHANDV*
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spliced messenger RNA

>Gvermi11463.t1 ID=Gvermi11463.t1|Name=Gvermi11463.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=555bp|location=Sequence derived from alignment at ScGOVlb_3404:470724..471437- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAATCACGACTTCGTGGACGCAGTCAGCTCCAGAAAGTACTTCGT
TCTCTACCCGTCAGCCGCCGTGGGCCCCACCCCAACAAAACACGTACGGC
AGATTAGTTGCGTACAGTACGGGGTTGAACTTCAAACCCGCTACTCTGTC
CGACAACTCCCATCGGACGAGTGCCATGCGCATATGACCTCTGCCAGCTC
GCTTGCAATATTTGTGGTCATTGTCTCATCGTCTTCTGACGATACGGTTG
CGTTTCCATCAAAAGACGTCTTCCCATCGCATCGCTGCATCCCCACCATC
ACGAACCCGCTCACCATTATGAGCGGCGAAACCAAGGTGGCGGACGTCGC
CGCCCAGCTCCGCCAGAGAATCCCCGTCAACAAGAACCAGTTCATGAAGT
TCTACGAATGGTATCATCGAACGTATTTCAAGACCGGCAGCTTTGCGCCG
GTTGTGCACGTTATGCTGGGAATCGGCATCATCGGCTACGCCATTGAGTA
CCCCCACATCAAGCACGAGTTGGAGGAACATAAGAAGCACGCCAATGACG
TTTAG
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protein sequence of Gvermi11463.t1

>Gvermi11463.t1 ID=Gvermi11463.t1|Name=Gvermi11463.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=185bp
MINHDFVDAVSSRKYFVLYPSAAVGPTPTKHVRQISCVQYGVELQTRYSV
RQLPSDECHAHMTSASSLAIFVVIVSSSSDDTVAFPSKDVFPSHRCIPTI
TNPLTIMSGETKVADVAAQLRQRIPVNKNQFMKFYEWYHRTYFKTGSFAP
VVHVMLGIGIIGYAIEYPHIKHELEEHKKHANDV*
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mRNA from alignment at ScGOVlb_3404:470724..471437-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11463.t1 ID=Gvermi11463.t1|Name=Gvermi11463.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=714bp|location=Sequence derived from alignment at ScGOVlb_3404:470724..471437- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCAATCACGACTTCGTGGACGCAGTCAGCTCCAGAAAGTACTTCGT
TCTCTACCCGTCAGCCGCCGTGGGCCCCACCCCAACAAAACACGTACGGC
AGATTAGTTGCGTACAGTACGGGGTTGAACTTCAAACCCGCTACTGTACG
TAACTCACATTGTGAGGAGTGCACTTCAAACTTTGAAGTGCACTCCTCAC
AATGTGAGCGTGAGGCTCACACCCCCCAATCTGTGCGGTGCTGCTCCCCA
ACAGGGCTTTACAGCCCGACTGCCTTACATCACTTGTGCCATGCCCGGGA
CAAGCTGTCCGACAACTCCCATCGGACGAGTGCCATGCGCATATGACCTC
TGCCAGCTCGCTTGCAATATTTGTGGTCATTGTCTCATCGTCTTCTGACG
ATACGGTTGCGTTTCCATCAAAAGACGTCTTCCCATCGCATCGCTGCATC
CCCACCATCACGAACCCGCTCACCATTATGAGCGGCGAAACCAAGGTGGC
GGACGTCGCCGCCCAGCTCCGCCAGAGAATCCCCGTCAACAAGAACCAGT
TCATGAAGTTCTACGAATGGTATCATCGAACGTATTTCAAGACCGGCAGC
TTTGCGCCGGTTGTGCACGTTATGCTGGGAATCGGCATCATCGGCTACGC
CATTGAGTACCCCCACATCAAGCACGAGTTGGAGGAACATAAGAAGCACG
CCAATGACGTTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:470724..471437-

>Gvermi11463.t1 ID=Gvermi11463.t1|Name=Gvermi11463.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=555bp|location=Sequence derived from alignment at ScGOVlb_3404:470724..471437- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCAATCACGACTTCGTGGACGCAGTCAGCTCCAGAAAGTACTTCGT
TCTCTACCCGTCAGCCGCCGTGGGCCCCACCCCAACAAAACACGTACGGC
AGATTAGTTGCGTACAGTACGGGGTTGAACTTCAAACCCGCTACTCTGTC
CGACAACTCCCATCGGACGAGTGCCATGCGCATATGACCTCTGCCAGCTC
GCTTGCAATATTTGTGGTCATTGTCTCATCGTCTTCTGACGATACGGTTG
CGTTTCCATCAAAAGACGTCTTCCCATCGCATCGCTGCATCCCCACCATC
ACGAACCCGCTCACCATTATGAGCGGCGAAACCAAGGTGGCGGACGTCGC
CGCCCAGCTCCGCCAGAGAATCCCCGTCAACAAGAACCAGTTCATGAAGT
TCTACGAATGGTATCATCGAACGTATTTCAAGACCGGCAGCTTTGCGCCG
GTTGTGCACGTTATGCTGGGAATCGGCATCATCGGCTACGCCATTGAGTA
CCCCCACATCAAGCACGAGTTGGAGGAACATAAGAAGCACGCCAATGACG
TTTAG
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