Gvermi11462.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi11462.t1
Unique Name	Gvermi11462.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	540

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:468804..470423 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	38833.XP_003060326.1
PFAMs	Exo_endo_phos
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K18764,ko:K19612
Evalue	4.91e-91
EggNOG OGs	COG5239@1\|root,KOG0620@2759\|Eukaryota
EC	3.1.13.4
Description	poly(A)-specific ribonuclease activity
COG category	A
BRITE	ko00000,ko01000,ko03019,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi11462	Gvermi11462	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 468804..470423 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11462.t1.start1	Gvermi11462.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 468804..468806 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11462.t1.CDS1	Gvermi11462.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 468804..470423 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11462.t1.exon1	Gvermi11462.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 468804..470423 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11462.t1.stop1	Gvermi11462.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 470421..470423 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi11462.t1	Gvermi11462.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 468804..470423 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:468804..470423+
coding sequence from alignment at ScGOVlb_3404:468804..470423+

mRNA sequence

>Gvermi11462.t1 ID=Gvermi11462.t1|Name=Gvermi11462.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=540bp
MTYNRQLTTPPNATRSQNFLPPLAVKRPPTLALRLPTYLVFAHQHPPTFS
DRLRTTTASNVVTKSTTMLTSRAPSAFALSPVPLRVSRYRLHTAASAFPQ
WKPSPWRPFSNLRPFPRTPSMSTSPKPQRVGPGGNGASNGNGDTPSDFGE
KELFASSPELEQLAIKSSDAPILTRIVSYNVLSSSLAAGSHFPDCDPANL
SNTTRLKRLLIKLEGPVASRSIICLQEVSLSWSGPLHTFFANRGFHLLLA
SHGSFFNGYMGEGLAFPLDLYEAIDLHIERLTDFIRWPQAPKLVGIPGVI
SEIRSRVIKAVQVLAGFSKPSRTAKKEPWAHARGRQNRFIFARLRSRTNG
AKICVGTYHMPCIYWSPPVMMIHSALVVSRFQKLCGDDYGVLAGDFNIKP
TDESYEMILRGTVDEQHQDFPPNAPDGSPASSWFPKLLAPMKSAYREILG
NEPDFTNYAKVENQPVFIETLDYLFCTSDVDVVDVLRLPKREAVQGPYPD
ATEPSDHVMIGATLRLPAPSRQGEREKAEANVGVYEDGS*

spliced messenger RNA

>Gvermi11462.t1 ID=Gvermi11462.t1|Name=Gvermi11462.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at ScGOVlb_3404:468804..470423+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTACAACCGCCAACTTACCACGCCACCAAATGCAACGCGCTCTCA
AAATTTTCTGCCACCACTTGCAGTAAAGCGACCGCCTACACTAGCGCTTA
GGCTGCCCACATATCTTGTATTCGCTCATCAGCATCCCCCAACGTTTTCC
GATCGTCTTCGAACTACCACTGCTTCCAACGTCGTCACGAAGTCCACCAC
CATGCTTACCTCGCGCGCTCCGTCCGCTTTTGCACTATCACCGGTCCCTC
TTCGTGTCTCGCGCTACAGGTTGCACACAGCAGCGAGTGCATTCCCACAG
TGGAAGCCATCCCCATGGCGCCCCTTTTCCAATCTGCGTCCTTTTCCGAG
GACACCCTCCATGTCTACATCGCCAAAGCCGCAACGCGTTGGCCCCGGTG
GAAACGGCGCTTCCAACGGCAACGGCGATACTCCGTCAGATTTTGGCGAA
AAGGAGCTTTTTGCGTCGTCTCCAGAATTGGAACAACTTGCCATCAAGTC
CTCTGATGCTCCCATTCTCACACGCATTGTATCGTATAATGTGCTGTCTT
CATCTCTAGCCGCGGGGTCGCATTTTCCGGATTGCGATCCAGCCAATTTA
AGCAATACCACGCGTTTGAAGCGCCTTCTGATCAAGCTGGAAGGCCCGGT
TGCTTCGAGGTCAATCATTTGCCTCCAAGAGGTCTCGCTGTCTTGGAGTG
GTCCTCTGCATACTTTTTTTGCAAACCGAGGCTTTCACTTACTATTAGCA
TCGCACGGTTCGTTTTTTAATGGATATATGGGGGAAGGCTTAGCATTTCC
TCTTGACTTGTATGAGGCCATTGATCTTCACATTGAGCGACTTACGGACT
TCATTCGCTGGCCGCAAGCTCCAAAGTTAGTAGGAATTCCCGGCGTGATT
TCGGAGATACGTTCTCGAGTGATCAAGGCGGTGCAGGTGTTGGCCGGGTT
TTCGAAACCATCCAGAACTGCGAAGAAAGAGCCATGGGCACACGCGAGAG
GCAGACAGAATCGTTTCATCTTTGCCCGCTTGCGTTCTCGTACCAACGGA
GCTAAAATCTGTGTGGGCACTTATCACATGCCATGTATTTATTGGTCACC
ACCGGTGATGATGATTCATTCAGCGTTGGTTGTTAGTCGCTTTCAGAAAT
TATGCGGCGATGACTATGGCGTTCTTGCGGGGGACTTCAACATAAAGCCA
ACAGATGAATCATATGAGATGATTCTGCGAGGCACTGTTGATGAACAACA
TCAGGATTTTCCTCCGAATGCACCGGACGGGTCGCCTGCGTCCTCATGGT
TTCCCAAGCTGTTGGCACCTATGAAGAGCGCTTATCGCGAAATTCTCGGC
AATGAACCCGACTTTACAAACTACGCTAAGGTTGAAAATCAACCTGTGTT
TATAGAAACGCTTGATTACTTGTTCTGCACTTCCGACGTGGACGTAGTAG
ATGTACTCAGACTACCAAAGCGGGAGGCTGTTCAGGGTCCATATCCCGAC
GCGACAGAACCTTCGGACCACGTGATGATCGGGGCTACTCTGCGACTACC
GGCGCCTTCTCGCCAAGGGGAGCGGGAAAAGGCGGAGGCGAATGTGGGCG
TTTACGAGGATGGATCGTGA

protein sequence of Gvermi11462.t1

>Gvermi11462.t1 ID=Gvermi11462.t1|Name=Gvermi11462.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=540bp
MTYNRQLTTPPNATRSQNFLPPLAVKRPPTLALRLPTYLVFAHQHPPTFS
DRLRTTTASNVVTKSTTMLTSRAPSAFALSPVPLRVSRYRLHTAASAFPQ
WKPSPWRPFSNLRPFPRTPSMSTSPKPQRVGPGGNGASNGNGDTPSDFGE
KELFASSPELEQLAIKSSDAPILTRIVSYNVLSSSLAAGSHFPDCDPANL
SNTTRLKRLLIKLEGPVASRSIICLQEVSLSWSGPLHTFFANRGFHLLLA
SHGSFFNGYMGEGLAFPLDLYEAIDLHIERLTDFIRWPQAPKLVGIPGVI
SEIRSRVIKAVQVLAGFSKPSRTAKKEPWAHARGRQNRFIFARLRSRTNG
AKICVGTYHMPCIYWSPPVMMIHSALVVSRFQKLCGDDYGVLAGDFNIKP
TDESYEMILRGTVDEQHQDFPPNAPDGSPASSWFPKLLAPMKSAYREILG
NEPDFTNYAKVENQPVFIETLDYLFCTSDVDVVDVLRLPKREAVQGPYPD
ATEPSDHVMIGATLRLPAPSRQGEREKAEANVGVYEDGS*

mRNA from alignment at ScGOVlb_3404:468804..470423+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi11462.t1 ID=Gvermi11462.t1|Name=Gvermi11462.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1620bp|location=Sequence derived from alignment at ScGOVlb_3404:468804..470423+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTACAACCGCCAACTTACCACGCCACCAAATGCAACGCGCTCTCA
AAATTTTCTGCCACCACTTGCAGTAAAGCGACCGCCTACACTAGCGCTTA
GGCTGCCCACATATCTTGTATTCGCTCATCAGCATCCCCCAACGTTTTCC
GATCGTCTTCGAACTACCACTGCTTCCAACGTCGTCACGAAGTCCACCAC
CATGCTTACCTCGCGCGCTCCGTCCGCTTTTGCACTATCACCGGTCCCTC
TTCGTGTCTCGCGCTACAGGTTGCACACAGCAGCGAGTGCATTCCCACAG
TGGAAGCCATCCCCATGGCGCCCCTTTTCCAATCTGCGTCCTTTTCCGAG
GACACCCTCCATGTCTACATCGCCAAAGCCGCAACGCGTTGGCCCCGGTG
GAAACGGCGCTTCCAACGGCAACGGCGATACTCCGTCAGATTTTGGCGAA
AAGGAGCTTTTTGCGTCGTCTCCAGAATTGGAACAACTTGCCATCAAGTC
CTCTGATGCTCCCATTCTCACACGCATTGTATCGTATAATGTGCTGTCTT
CATCTCTAGCCGCGGGGTCGCATTTTCCGGATTGCGATCCAGCCAATTTA
AGCAATACCACGCGTTTGAAGCGCCTTCTGATCAAGCTGGAAGGCCCGGT
TGCTTCGAGGTCAATCATTTGCCTCCAAGAGGTCTCGCTGTCTTGGAGTG
GTCCTCTGCATACTTTTTTTGCAAACCGAGGCTTTCACTTACTATTAGCA
TCGCACGGTTCGTTTTTTAATGGATATATGGGGGAAGGCTTAGCATTTCC
TCTTGACTTGTATGAGGCCATTGATCTTCACATTGAGCGACTTACGGACT
TCATTCGCTGGCCGCAAGCTCCAAAGTTAGTAGGAATTCCCGGCGTGATT
TCGGAGATACGTTCTCGAGTGATCAAGGCGGTGCAGGTGTTGGCCGGGTT
TTCGAAACCATCCAGAACTGCGAAGAAAGAGCCATGGGCACACGCGAGAG
GCAGACAGAATCGTTTCATCTTTGCCCGCTTGCGTTCTCGTACCAACGGA
GCTAAAATCTGTGTGGGCACTTATCACATGCCATGTATTTATTGGTCACC
ACCGGTGATGATGATTCATTCAGCGTTGGTTGTTAGTCGCTTTCAGAAAT
TATGCGGCGATGACTATGGCGTTCTTGCGGGGGACTTCAACATAAAGCCA
ACAGATGAATCATATGAGATGATTCTGCGAGGCACTGTTGATGAACAACA
TCAGGATTTTCCTCCGAATGCACCGGACGGGTCGCCTGCGTCCTCATGGT
TTCCCAAGCTGTTGGCACCTATGAAGAGCGCTTATCGCGAAATTCTCGGC
AATGAACCCGACTTTACAAACTACGCTAAGGTTGAAAATCAACCTGTGTT
TATAGAAACGCTTGATTACTTGTTCTGCACTTCCGACGTGGACGTAGTAG
ATGTACTCAGACTACCAAAGCGGGAGGCTGTTCAGGGTCCATATCCCGAC
GCGACAGAACCTTCGGACCACGTGATGATCGGGGCTACTCTGCGACTACC
GGCGCCTTCTCGCCAAGGGGAGCGGGAAAAGGCGGAGGCGAATGTGGGCG
TTTACGAGGATGGATCGTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:468804..470423+

>Gvermi11462.t1 ID=Gvermi11462.t1|Name=Gvermi11462.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1620bp|location=Sequence derived from alignment at ScGOVlb_3404:468804..470423+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTTACAACCGCCAACTTACCACGCCACCAAATGCAACGCGCTCTCA
AAATTTTCTGCCACCACTTGCAGTAAAGCGACCGCCTACACTAGCGCTTA
GGCTGCCCACATATCTTGTATTCGCTCATCAGCATCCCCCAACGTTTTCC
GATCGTCTTCGAACTACCACTGCTTCCAACGTCGTCACGAAGTCCACCAC
CATGCTTACCTCGCGCGCTCCGTCCGCTTTTGCACTATCACCGGTCCCTC
TTCGTGTCTCGCGCTACAGGTTGCACACAGCAGCGAGTGCATTCCCACAG
TGGAAGCCATCCCCATGGCGCCCCTTTTCCAATCTGCGTCCTTTTCCGAG
GACACCCTCCATGTCTACATCGCCAAAGCCGCAACGCGTTGGCCCCGGTG
GAAACGGCGCTTCCAACGGCAACGGCGATACTCCGTCAGATTTTGGCGAA
AAGGAGCTTTTTGCGTCGTCTCCAGAATTGGAACAACTTGCCATCAAGTC
CTCTGATGCTCCCATTCTCACACGCATTGTATCGTATAATGTGCTGTCTT
CATCTCTAGCCGCGGGGTCGCATTTTCCGGATTGCGATCCAGCCAATTTA
AGCAATACCACGCGTTTGAAGCGCCTTCTGATCAAGCTGGAAGGCCCGGT
TGCTTCGAGGTCAATCATTTGCCTCCAAGAGGTCTCGCTGTCTTGGAGTG
GTCCTCTGCATACTTTTTTTGCAAACCGAGGCTTTCACTTACTATTAGCA
TCGCACGGTTCGTTTTTTAATGGATATATGGGGGAAGGCTTAGCATTTCC
TCTTGACTTGTATGAGGCCATTGATCTTCACATTGAGCGACTTACGGACT
TCATTCGCTGGCCGCAAGCTCCAAAGTTAGTAGGAATTCCCGGCGTGATT
TCGGAGATACGTTCTCGAGTGATCAAGGCGGTGCAGGTGTTGGCCGGGTT
TTCGAAACCATCCAGAACTGCGAAGAAAGAGCCATGGGCACACGCGAGAG
GCAGACAGAATCGTTTCATCTTTGCCCGCTTGCGTTCTCGTACCAACGGA
GCTAAAATCTGTGTGGGCACTTATCACATGCCATGTATTTATTGGTCACC
ACCGGTGATGATGATTCATTCAGCGTTGGTTGTTAGTCGCTTTCAGAAAT
TATGCGGCGATGACTATGGCGTTCTTGCGGGGGACTTCAACATAAAGCCA
ACAGATGAATCATATGAGATGATTCTGCGAGGCACTGTTGATGAACAACA
TCAGGATTTTCCTCCGAATGCACCGGACGGGTCGCCTGCGTCCTCATGGT
TTCCCAAGCTGTTGGCACCTATGAAGAGCGCTTATCGCGAAATTCTCGGC
AATGAACCCGACTTTACAAACTACGCTAAGGTTGAAAATCAACCTGTGTT
TATAGAAACGCTTGATTACTTGTTCTGCACTTCCGACGTGGACGTAGTAG
ATGTACTCAGACTACCAAAGCGGGAGGCTGTTCAGGGTCCATATCCCGAC
GCGACAGAACCTTCGGACCACGTGATGATCGGGGCTACTCTGCGACTACC
GGCGCCTTCTCGCCAAGGGGAGCGGGAAAAGGCGGAGGCGAATGTGGGCG
TTTACGAGGATGGATCGTGA