Gvermi11451.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11451.t1
Unique NameGvermi11451.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length470
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:395543..396952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705388.1
PFAMsRubis-subs-bind,SET
Max annot lvl2759|Eukaryota
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
Evalue1.84e-117
EggNOG OGsKOG1337@1|root,KOG1337@2759|Eukaryota
EC2.1.1.43
Descriptionpeptidyl-lysine monomethylation
COG categoryI
BRITEko00000,ko00001,ko01000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11451Gvermi11451Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 395543..396952 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11451.t1.stop1Gvermi11451.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 395543..395545 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11451.t1.CDS1Gvermi11451.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 395543..396952 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11451.t1.exon1Gvermi11451.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 395543..396952 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11451.t1.start1Gvermi11451.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 396950..396952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11451.t1Gvermi11451.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 395543..396952 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11451.t1 ID=Gvermi11451.t1|Name=Gvermi11451.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=470bp
MIFSSFVSPVLVPVQRKSVAAHRCPSKRPKVTLSLSSSFPTPVKNPVARK
SAEFVNWLSDNGMYLSEAATWGRPMHPLAIADETMDDGEVSGRGLVAVKS
ILQGEAVFEVPYELILTKEVALRSLPLEDDVDDYIALACLLISERAKGED
SFWQPYLDILPIDEDLIPLFRWAEEDLALLRGSPSLLACRSLKLKLEEEF
KSAEENYFSRNREQFPEELFSKDAWEWAFAILFSRAIMLTGEQRIALVPY
ADLLNHNPFCSNYIDVHSKPLLDRKYVALYTDRPYGKMDQVYVTYGPKSN
SDLLLLYGFVSDRNPYDSVDILVSLSESDPLYKRKMEYLEQSGISPTTTF
PLYRDRYPMELIEFLRFCVADEHEFDNADFGDFINEANETQVARALIDAC
HAALDKYPQTRAEDDKIITDRKTFQMLSLKQRWAVRQRRAEKRILERTIG
NIEKEMTEPTFMFTEMGSA*
back to top

spliced messenger RNA

>Gvermi11451.t1 ID=Gvermi11451.t1|Name=Gvermi11451.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1410bp|location=Sequence derived from alignment at ScGOVlb_3404:395543..396952- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATATTTTCGTCTTTCGTGTCACCAGTGCTCGTGCCAGTTCAGAGAAA
GAGCGTGGCTGCACACCGATGCCCAAGTAAGCGTCCGAAGGTCACTCTTT
CCTTGTCGTCTTCATTTCCGACTCCTGTCAAGAACCCTGTTGCCAGAAAG
TCAGCAGAGTTCGTAAATTGGTTGAGCGATAATGGCATGTATCTCTCTGA
AGCGGCTACGTGGGGTAGGCCTATGCATCCACTAGCAATTGCTGATGAGA
CAATGGATGATGGAGAAGTTTCTGGGAGAGGCCTTGTAGCCGTGAAATCA
ATTCTGCAAGGGGAGGCGGTCTTCGAAGTTCCATACGAACTTATTTTAAC
GAAAGAGGTTGCACTTCGAAGTTTGCCCCTTGAAGATGATGTAGACGATT
ATATTGCACTTGCATGTCTTCTTATCTCTGAGAGAGCAAAGGGCGAAGAC
AGCTTTTGGCAACCCTATCTAGACATACTTCCAATCGATGAAGACCTCAT
ACCTCTATTTCGCTGGGCAGAAGAGGACTTGGCCTTGCTGAGAGGAAGTC
CTTCCTTATTGGCATGCAGAAGTCTCAAATTAAAGCTCGAAGAGGAGTTT
AAGTCGGCAGAAGAAAATTATTTTTCGAGAAACCGGGAGCAGTTCCCAGA
GGAACTGTTTTCGAAGGATGCATGGGAGTGGGCTTTCGCAATTCTCTTCT
CTCGAGCAATTATGCTGACGGGTGAACAAAGAATCGCACTCGTTCCATAC
GCAGATCTTCTCAACCATAATCCCTTTTGTTCAAACTATATCGATGTTCA
TTCGAAACCGTTGCTAGATCGCAAATATGTCGCGTTATACACTGACAGGC
CATATGGAAAGATGGACCAAGTATATGTAACCTACGGTCCGAAATCAAAT
TCTGACTTACTACTTCTCTATGGCTTTGTTTCAGACAGAAATCCGTACGA
CTCAGTGGATATTCTCGTCTCTCTTTCTGAATCCGATCCCCTTTACAAGC
GGAAAATGGAGTACCTCGAACAATCCGGGATTTCCCCAACCACAACGTTT
CCGCTCTACCGTGACCGCTATCCAATGGAACTGATAGAGTTTCTAAGATT
TTGTGTTGCAGATGAGCATGAATTTGACAACGCTGACTTTGGAGATTTCA
TCAACGAAGCTAACGAGACACAAGTTGCACGGGCGTTGATTGACGCATGT
CACGCTGCTTTAGACAAATACCCTCAAACTCGAGCAGAGGACGACAAAAT
AATCACAGACAGGAAGACTTTTCAGATGCTCAGCCTCAAACAAAGATGGG
CAGTGAGGCAGAGAAGAGCCGAAAAGCGAATTCTTGAACGCACGATAGGT
AACATTGAAAAGGAGATGACTGAACCAACGTTCATGTTTACAGAGATGGG
CAGTGCCTAA
back to top

protein sequence of Gvermi11451.t1

>Gvermi11451.t1 ID=Gvermi11451.t1|Name=Gvermi11451.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=470bp
MIFSSFVSPVLVPVQRKSVAAHRCPSKRPKVTLSLSSSFPTPVKNPVARK
SAEFVNWLSDNGMYLSEAATWGRPMHPLAIADETMDDGEVSGRGLVAVKS
ILQGEAVFEVPYELILTKEVALRSLPLEDDVDDYIALACLLISERAKGED
SFWQPYLDILPIDEDLIPLFRWAEEDLALLRGSPSLLACRSLKLKLEEEF
KSAEENYFSRNREQFPEELFSKDAWEWAFAILFSRAIMLTGEQRIALVPY
ADLLNHNPFCSNYIDVHSKPLLDRKYVALYTDRPYGKMDQVYVTYGPKSN
SDLLLLYGFVSDRNPYDSVDILVSLSESDPLYKRKMEYLEQSGISPTTTF
PLYRDRYPMELIEFLRFCVADEHEFDNADFGDFINEANETQVARALIDAC
HAALDKYPQTRAEDDKIITDRKTFQMLSLKQRWAVRQRRAEKRILERTIG
NIEKEMTEPTFMFTEMGSA*
back to top

mRNA from alignment at ScGOVlb_3404:395543..396952-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11451.t1 ID=Gvermi11451.t1|Name=Gvermi11451.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1410bp|location=Sequence derived from alignment at ScGOVlb_3404:395543..396952- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATATTTTCGTCTTTCGTGTCACCAGTGCTCGTGCCAGTTCAGAGAAA
GAGCGTGGCTGCACACCGATGCCCAAGTAAGCGTCCGAAGGTCACTCTTT
CCTTGTCGTCTTCATTTCCGACTCCTGTCAAGAACCCTGTTGCCAGAAAG
TCAGCAGAGTTCGTAAATTGGTTGAGCGATAATGGCATGTATCTCTCTGA
AGCGGCTACGTGGGGTAGGCCTATGCATCCACTAGCAATTGCTGATGAGA
CAATGGATGATGGAGAAGTTTCTGGGAGAGGCCTTGTAGCCGTGAAATCA
ATTCTGCAAGGGGAGGCGGTCTTCGAAGTTCCATACGAACTTATTTTAAC
GAAAGAGGTTGCACTTCGAAGTTTGCCCCTTGAAGATGATGTAGACGATT
ATATTGCACTTGCATGTCTTCTTATCTCTGAGAGAGCAAAGGGCGAAGAC
AGCTTTTGGCAACCCTATCTAGACATACTTCCAATCGATGAAGACCTCAT
ACCTCTATTTCGCTGGGCAGAAGAGGACTTGGCCTTGCTGAGAGGAAGTC
CTTCCTTATTGGCATGCAGAAGTCTCAAATTAAAGCTCGAAGAGGAGTTT
AAGTCGGCAGAAGAAAATTATTTTTCGAGAAACCGGGAGCAGTTCCCAGA
GGAACTGTTTTCGAAGGATGCATGGGAGTGGGCTTTCGCAATTCTCTTCT
CTCGAGCAATTATGCTGACGGGTGAACAAAGAATCGCACTCGTTCCATAC
GCAGATCTTCTCAACCATAATCCCTTTTGTTCAAACTATATCGATGTTCA
TTCGAAACCGTTGCTAGATCGCAAATATGTCGCGTTATACACTGACAGGC
CATATGGAAAGATGGACCAAGTATATGTAACCTACGGTCCGAAATCAAAT
TCTGACTTACTACTTCTCTATGGCTTTGTTTCAGACAGAAATCCGTACGA
CTCAGTGGATATTCTCGTCTCTCTTTCTGAATCCGATCCCCTTTACAAGC
GGAAAATGGAGTACCTCGAACAATCCGGGATTTCCCCAACCACAACGTTT
CCGCTCTACCGTGACCGCTATCCAATGGAACTGATAGAGTTTCTAAGATT
TTGTGTTGCAGATGAGCATGAATTTGACAACGCTGACTTTGGAGATTTCA
TCAACGAAGCTAACGAGACACAAGTTGCACGGGCGTTGATTGACGCATGT
CACGCTGCTTTAGACAAATACCCTCAAACTCGAGCAGAGGACGACAAAAT
AATCACAGACAGGAAGACTTTTCAGATGCTCAGCCTCAAACAAAGATGGG
CAGTGAGGCAGAGAAGAGCCGAAAAGCGAATTCTTGAACGCACGATAGGT
AACATTGAAAAGGAGATGACTGAACCAACGTTCATGTTTACAGAGATGGG
CAGTGCCTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:395543..396952-

>Gvermi11451.t1 ID=Gvermi11451.t1|Name=Gvermi11451.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1410bp|location=Sequence derived from alignment at ScGOVlb_3404:395543..396952- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATATTTTCGTCTTTCGTGTCACCAGTGCTCGTGCCAGTTCAGAGAAA
GAGCGTGGCTGCACACCGATGCCCAAGTAAGCGTCCGAAGGTCACTCTTT
CCTTGTCGTCTTCATTTCCGACTCCTGTCAAGAACCCTGTTGCCAGAAAG
TCAGCAGAGTTCGTAAATTGGTTGAGCGATAATGGCATGTATCTCTCTGA
AGCGGCTACGTGGGGTAGGCCTATGCATCCACTAGCAATTGCTGATGAGA
CAATGGATGATGGAGAAGTTTCTGGGAGAGGCCTTGTAGCCGTGAAATCA
ATTCTGCAAGGGGAGGCGGTCTTCGAAGTTCCATACGAACTTATTTTAAC
GAAAGAGGTTGCACTTCGAAGTTTGCCCCTTGAAGATGATGTAGACGATT
ATATTGCACTTGCATGTCTTCTTATCTCTGAGAGAGCAAAGGGCGAAGAC
AGCTTTTGGCAACCCTATCTAGACATACTTCCAATCGATGAAGACCTCAT
ACCTCTATTTCGCTGGGCAGAAGAGGACTTGGCCTTGCTGAGAGGAAGTC
CTTCCTTATTGGCATGCAGAAGTCTCAAATTAAAGCTCGAAGAGGAGTTT
AAGTCGGCAGAAGAAAATTATTTTTCGAGAAACCGGGAGCAGTTCCCAGA
GGAACTGTTTTCGAAGGATGCATGGGAGTGGGCTTTCGCAATTCTCTTCT
CTCGAGCAATTATGCTGACGGGTGAACAAAGAATCGCACTCGTTCCATAC
GCAGATCTTCTCAACCATAATCCCTTTTGTTCAAACTATATCGATGTTCA
TTCGAAACCGTTGCTAGATCGCAAATATGTCGCGTTATACACTGACAGGC
CATATGGAAAGATGGACCAAGTATATGTAACCTACGGTCCGAAATCAAAT
TCTGACTTACTACTTCTCTATGGCTTTGTTTCAGACAGAAATCCGTACGA
CTCAGTGGATATTCTCGTCTCTCTTTCTGAATCCGATCCCCTTTACAAGC
GGAAAATGGAGTACCTCGAACAATCCGGGATTTCCCCAACCACAACGTTT
CCGCTCTACCGTGACCGCTATCCAATGGAACTGATAGAGTTTCTAAGATT
TTGTGTTGCAGATGAGCATGAATTTGACAACGCTGACTTTGGAGATTTCA
TCAACGAAGCTAACGAGACACAAGTTGCACGGGCGTTGATTGACGCATGT
CACGCTGCTTTAGACAAATACCCTCAAACTCGAGCAGAGGACGACAAAAT
AATCACAGACAGGAAGACTTTTCAGATGCTCAGCCTCAAACAAAGATGGG
CAGTGAGGCAGAGAAGAGCCGAAAAGCGAATTCTTGAACGCACGATAGGT
AACATTGAAAAGGAGATGACTGAACCAACGTTCATGTTTACAGAGATGGG
CAGTGCCTAA
back to top