Gvermi11442.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11442.t1
Unique NameGvermi11442.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:379246..380280 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_023836-tr
Preferred nameXRCC3
PFAMsRad51
Max annot lvl33208|Metazoa
KEGG koko:K10880
KEGG Pathwayko03440,map03440
GOsGO:0000003,GO:0000150,GO:0000217,GO:0000228,GO:0000280,GO:0000400,GO:0000707,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000730,GO:0000781,GO:0000784,GO:0001325,GO:0001709,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006323,GO:0006403,GO:0006417,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007088,GO:0007127,GO:0007131,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007294,GO:0007346,GO:0007389,GO:0008094,GO:0008150,GO:0008152,GO:0008298,GO:0009314,GO:0009628,GO:0009653,GO:0009798,GO:0009889,GO:0009948,GO:0009949,GO:0009950,GO:0009951,GO:0009952,GO:0009953,GO:0009987,GO:0009994,GO:0010212,GO:0010468,GO:0010556,GO:0010564,GO:0010608,GO:0010824,GO:0010965,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030071,GO:0030154,GO:0030261,GO:0030706,GO:0030716,GO:0030717,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032200,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033061,GO:0033063,GO:0033065,GO:0033554,GO:0034248,GO:0034622,GO:0034641,GO:0035825,GO:0036297,GO:0042148,GO:0042592,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045003,GO:0045165,GO:0045787,GO:0045931,GO:0046483,GO:0046605,GO:0048285,GO:0048468,GO:0048471,GO:0048477,GO:0048518,GO:0048522,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051179,GO:0051246,GO:0051276,GO:0051321,GO:0051493,GO:0051641,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051983,GO:0060249,GO:0060255,GO:0061982,GO:0061988,GO:0065001,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070507,GO:0070727,GO:0071103,GO:0071139,GO:0071140,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090068,GO:0090231,GO:0090232,GO:0090266,GO:0090267,GO:0090304,GO:0090656,GO:0090657,GO:0090735,GO:0090737,GO:0097159,GO:0098687,GO:0140013,GO:0140097,GO:1901360,GO:1901363,GO:1901976,GO:1901978,GO:1901987,GO:1901990,GO:1902099,GO:1903046,GO:1903504,GO:1905818,GO:2000112
Evalue3.26e-29
EggNOG OGsCOG0468@1|root,KOG1564@2759|Eukaryota,38E66@33154|Opisthokonta,3BAGD@33208|Metazoa,3CWZ8@33213|Bilateria
Descriptionresolution of mitotic recombination intermediates
COG categoryL
BRITEko00000,ko00001,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11442Gvermi11442Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 379246..380280 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11442.t1.start1Gvermi11442.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 379246..379248 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11442.t1.CDS1Gvermi11442.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 379246..380280 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11442.t1.exon1Gvermi11442.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 379246..380280 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11442.t1.stop1Gvermi11442.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 380278..380280 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11442.t1Gvermi11442.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 379246..380280 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11442.t1 ID=Gvermi11442.t1|Name=Gvermi11442.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=345bp
MIRRSNRVSETKDFLPRDENEQQERLREEAERVVSARGWASIQEELGRPA
LEGHGSPILPYIATSILDLNEGATFESINLKEFCAHHEESLSFQEACRAM
KCTTLKTGCSAVDNILGGGICVNGGSILEISGKAGVGKTQLAMQIALMTV
APCEQGGLQSKCIYAFIEGRLPVKRMREIEHAMCTKFGLKSGTLLHGIVV
EEVRSADELLVWSETRLPYLLNKIKARVVVIDSIAAVYRPEFQDALSRTR
HLAQMSAALKRAVAFVEGVCICVNQVSQKVDGVGFSSIVPALGSVWGNAV
ETRMFLTRSGSRRFARILDSAHLVDTEEEEYHICAEGVVSTEEG*
back to top

spliced messenger RNA

>Gvermi11442.t1 ID=Gvermi11442.t1|Name=Gvermi11442.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at ScGOVlb_3404:379246..380280+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCGAAGATCAAATCGAGTTTCTGAAACGAAAGACTTTTTACCAAG
GGACGAAAATGAACAACAAGAAAGGCTTCGAGAGGAGGCGGAAAGAGTTG
TGAGTGCGCGCGGCTGGGCATCGATTCAAGAAGAGCTAGGGCGTCCTGCG
CTTGAGGGCCATGGCAGCCCAATACTCCCGTACATTGCCACTTCAATACT
TGATCTCAATGAAGGTGCAACTTTCGAATCCATCAACCTCAAGGAATTTT
GCGCTCACCATGAAGAATCATTGTCATTTCAAGAAGCATGCAGAGCCATG
AAGTGCACCACTTTGAAGACTGGTTGTAGCGCTGTAGACAACATTCTCGG
GGGTGGAATATGTGTGAATGGAGGATCGATTCTCGAAATCAGCGGAAAGG
CTGGAGTTGGTAAGACACAGTTGGCGATGCAAATCGCCTTGATGACTGTT
GCACCTTGTGAGCAGGGTGGTCTACAATCCAAATGCATTTACGCGTTCAT
TGAAGGTCGACTACCGGTCAAACGCATGCGAGAGATCGAACACGCGATGT
GCACCAAGTTTGGTTTGAAAAGCGGTACATTGCTACATGGGATCGTAGTC
GAGGAAGTTCGATCGGCGGATGAATTGCTGGTGTGGTCTGAAACAAGACT
GCCGTATTTACTCAACAAGATTAAGGCACGTGTCGTGGTCATTGACAGTA
TTGCTGCAGTGTATCGACCAGAGTTTCAGGACGCTCTTTCTAGAACCCGA
CATTTGGCGCAGATGAGCGCTGCTTTGAAACGAGCAGTGGCTTTCGTTGA
GGGAGTGTGTATTTGTGTGAATCAAGTCAGCCAGAAAGTCGATGGCGTTG
GGTTCAGCAGTATCGTGCCCGCGCTCGGTAGTGTGTGGGGAAACGCGGTG
GAGACAAGAATGTTTTTGACAAGAAGTGGCTCTCGTCGATTCGCTAGGAT
CCTTGATTCGGCACATTTAGTTGACACAGAAGAAGAAGAGTATCACATAT
GTGCGGAGGGAGTTGTATCCACAGAAGAAGGTTAA
back to top

protein sequence of Gvermi11442.t1

>Gvermi11442.t1 ID=Gvermi11442.t1|Name=Gvermi11442.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=345bp
MIRRSNRVSETKDFLPRDENEQQERLREEAERVVSARGWASIQEELGRPA
LEGHGSPILPYIATSILDLNEGATFESINLKEFCAHHEESLSFQEACRAM
KCTTLKTGCSAVDNILGGGICVNGGSILEISGKAGVGKTQLAMQIALMTV
APCEQGGLQSKCIYAFIEGRLPVKRMREIEHAMCTKFGLKSGTLLHGIVV
EEVRSADELLVWSETRLPYLLNKIKARVVVIDSIAAVYRPEFQDALSRTR
HLAQMSAALKRAVAFVEGVCICVNQVSQKVDGVGFSSIVPALGSVWGNAV
ETRMFLTRSGSRRFARILDSAHLVDTEEEEYHICAEGVVSTEEG*
back to top

mRNA from alignment at ScGOVlb_3404:379246..380280+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11442.t1 ID=Gvermi11442.t1|Name=Gvermi11442.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1035bp|location=Sequence derived from alignment at ScGOVlb_3404:379246..380280+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCCGAAGATCAAATCGAGTTTCTGAAACGAAAGACTTTTTACCAAG
GGACGAAAATGAACAACAAGAAAGGCTTCGAGAGGAGGCGGAAAGAGTTG
TGAGTGCGCGCGGCTGGGCATCGATTCAAGAAGAGCTAGGGCGTCCTGCG
CTTGAGGGCCATGGCAGCCCAATACTCCCGTACATTGCCACTTCAATACT
TGATCTCAATGAAGGTGCAACTTTCGAATCCATCAACCTCAAGGAATTTT
GCGCTCACCATGAAGAATCATTGTCATTTCAAGAAGCATGCAGAGCCATG
AAGTGCACCACTTTGAAGACTGGTTGTAGCGCTGTAGACAACATTCTCGG
GGGTGGAATATGTGTGAATGGAGGATCGATTCTCGAAATCAGCGGAAAGG
CTGGAGTTGGTAAGACACAGTTGGCGATGCAAATCGCCTTGATGACTGTT
GCACCTTGTGAGCAGGGTGGTCTACAATCCAAATGCATTTACGCGTTCAT
TGAAGGTCGACTACCGGTCAAACGCATGCGAGAGATCGAACACGCGATGT
GCACCAAGTTTGGTTTGAAAAGCGGTACATTGCTACATGGGATCGTAGTC
GAGGAAGTTCGATCGGCGGATGAATTGCTGGTGTGGTCTGAAACAAGACT
GCCGTATTTACTCAACAAGATTAAGGCACGTGTCGTGGTCATTGACAGTA
TTGCTGCAGTGTATCGACCAGAGTTTCAGGACGCTCTTTCTAGAACCCGA
CATTTGGCGCAGATGAGCGCTGCTTTGAAACGAGCAGTGGCTTTCGTTGA
GGGAGTGTGTATTTGTGTGAATCAAGTCAGCCAGAAAGTCGATGGCGTTG
GGTTCAGCAGTATCGTGCCCGCGCTCGGTAGTGTGTGGGGAAACGCGGTG
GAGACAAGAATGTTTTTGACAAGAAGTGGCTCTCGTCGATTCGCTAGGAT
CCTTGATTCGGCACATTTAGTTGACACAGAAGAAGAAGAGTATCACATAT
GTGCGGAGGGAGTTGTATCCACAGAAGAAGGTTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:379246..380280+

>Gvermi11442.t1 ID=Gvermi11442.t1|Name=Gvermi11442.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1035bp|location=Sequence derived from alignment at ScGOVlb_3404:379246..380280+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCCGAAGATCAAATCGAGTTTCTGAAACGAAAGACTTTTTACCAAG
GGACGAAAATGAACAACAAGAAAGGCTTCGAGAGGAGGCGGAAAGAGTTG
TGAGTGCGCGCGGCTGGGCATCGATTCAAGAAGAGCTAGGGCGTCCTGCG
CTTGAGGGCCATGGCAGCCCAATACTCCCGTACATTGCCACTTCAATACT
TGATCTCAATGAAGGTGCAACTTTCGAATCCATCAACCTCAAGGAATTTT
GCGCTCACCATGAAGAATCATTGTCATTTCAAGAAGCATGCAGAGCCATG
AAGTGCACCACTTTGAAGACTGGTTGTAGCGCTGTAGACAACATTCTCGG
GGGTGGAATATGTGTGAATGGAGGATCGATTCTCGAAATCAGCGGAAAGG
CTGGAGTTGGTAAGACACAGTTGGCGATGCAAATCGCCTTGATGACTGTT
GCACCTTGTGAGCAGGGTGGTCTACAATCCAAATGCATTTACGCGTTCAT
TGAAGGTCGACTACCGGTCAAACGCATGCGAGAGATCGAACACGCGATGT
GCACCAAGTTTGGTTTGAAAAGCGGTACATTGCTACATGGGATCGTAGTC
GAGGAAGTTCGATCGGCGGATGAATTGCTGGTGTGGTCTGAAACAAGACT
GCCGTATTTACTCAACAAGATTAAGGCACGTGTCGTGGTCATTGACAGTA
TTGCTGCAGTGTATCGACCAGAGTTTCAGGACGCTCTTTCTAGAACCCGA
CATTTGGCGCAGATGAGCGCTGCTTTGAAACGAGCAGTGGCTTTCGTTGA
GGGAGTGTGTATTTGTGTGAATCAAGTCAGCCAGAAAGTCGATGGCGTTG
GGTTCAGCAGTATCGTGCCCGCGCTCGGTAGTGTGTGGGGAAACGCGGTG
GAGACAAGAATGTTTTTGACAAGAAGTGGCTCTCGTCGATTCGCTAGGAT
CCTTGATTCGGCACATTTAGTTGACACAGAAGAAGAAGAGTATCACATAT
GTGCGGAGGGAGTTGTATCCACAGAAGAAGGTTAA
back to top