Gvermi11438.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11438.t1
Unique NameGvermi11438.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length378
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:353606..354739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704792.1
PFAMsPDZ,PDZ_2,Peptidase_M50
Max annot lvl2759|Eukaryota
Evalue2.75e-110
EggNOG OGsCOG0750@1|root,2QT40@2759|Eukaryota
Descriptionmetalloendopeptidase activity
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11438Gvermi11438Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 353606..354739 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11438.t1.start1Gvermi11438.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 353606..353608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11438.t1.CDS1Gvermi11438.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 353606..354739 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11438.t1.exon1Gvermi11438.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 353606..354739 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11438.t1.stop1Gvermi11438.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 354737..354739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11438.t1Gvermi11438.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 353606..354739 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11438.t1 ID=Gvermi11438.t1|Name=Gvermi11438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=378bp
LANVASTGAGVLVLGFIVFVHECGHFVAARAQNIRVKNFSIGFGPKLYAF
TPRGSDTEFTLRLLPLGGYVAFPEHVRVDERSGEQVVSDDADLLQNRPLL
DRAIVISAGVVANVALAWAAIFASVSLLGVPTYSFERGVKIENVVDARGA
AAAAGIRSGDIIMSVDGRPVGASLENSAQVAEYIRTCNGRDILFGIERGA
QQLDIKVTPTCCTRDGGSLVGVQLNTRVTMQRVRKAPLPSLVRSTNAEFS
RLWTQTWVGLSSVLSNFEQSSKNLSGPIGVVSMGAQLAREDSAALFTFCA
VISINLAVINSLPLPALDGGQMVLLAVEFVRGSPVSLRVQDAINRTALLL
FLAFSGVLVVGDLERLNIVGFLQRLLS*
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spliced messenger RNA

>Gvermi11438.t1 ID=Gvermi11438.t1|Name=Gvermi11438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at ScGOVlb_3404:353606..354739+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGCAAACGTCGCCAGCACCGGCGCCGGCGTGCTCGTGCTCGGCTTCAT
CGTGTTTGTGCACGAGTGCGGCCACTTTGTGGCCGCGCGCGCGCAGAACA
TCCGCGTCAAGAACTTCTCCATCGGCTTCGGCCCCAAGCTGTACGCCTTC
ACGCCGCGCGGCTCCGACACCGAGTTCACGCTGCGCCTGCTCCCGCTGGG
CGGCTACGTCGCCTTCCCGGAGCACGTGCGCGTGGACGAGCGCAGCGGCG
AGCAGGTCGTCAGCGACGACGCCGACCTGCTGCAGAACCGCCCGCTGCTG
GACCGCGCCATCGTCATCTCGGCGGGCGTGGTGGCCAACGTCGCGCTCGC
GTGGGCGGCCATCTTCGCGTCCGTGTCGCTGCTGGGCGTGCCCACGTACT
CGTTTGAGCGCGGCGTCAAGATCGAGAACGTGGTGGACGcgcgcggcgcc
gccgccgccgccgGCATCCGCTCCGGCGACATCATCATGTCGGTGGACGG
GCGGCCGGTGGGCGCCTCGCTGGAAAACTCGGCGCAGGTGGCCGAGTACA
TCCGCACATGCAACGGACGCGACATTTTGTTCGGCATCGAGCGCGGCGCG
CAGCAGCTGGACATCAAGGTGACGCCCACGTGCTGCACGCGCGATGGAGG
CTCGCTGGTGGGCGTGCAGCTCAACACGCGCGTGACGATGCAGCGCGTGC
GCAAGGCGCCGCTTCCCTCGCTGGTGCGCAGCACCAACGCCGAGTTCAGT
CGGCTGTGGACGCAGACGTGGGTCGGGCTCAGCTCGGTGCTGAGCAACTT
TGAGCAGTCGTCCAAGAACCTGTCGGGCCCCATCGGGGTGGTGTCCATGG
GGGCGCAGCTGGCGCGGGAGGATTCGGCGGCGCTGTTCACGTTTTGCGCC
GTGATCAGCATCAATCTGGCGGTGATCAACTCGCTGCCGCTGCCAGCGCT
GGACGGTGGACAGATGGTGCTGCTGGCGGTGGAGTTTGTGCGCGGCAGCC
CGGTATCGCTGCGCGTACAGGACGCGATCAATCGCACGGCGCTGCTGCTG
TTTCTGGCGTTTTCTGGGGTGCTGGTGGTGGGCGACTTGGAACGGCTCAA
CATTGTGGGTTTTCTGCAACGGCTGTTGAGCTGA
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protein sequence of Gvermi11438.t1

>Gvermi11438.t1 ID=Gvermi11438.t1|Name=Gvermi11438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=378bp
LANVASTGAGVLVLGFIVFVHECGHFVAARAQNIRVKNFSIGFGPKLYAF
TPRGSDTEFTLRLLPLGGYVAFPEHVRVDERSGEQVVSDDADLLQNRPLL
DRAIVISAGVVANVALAWAAIFASVSLLGVPTYSFERGVKIENVVDARGA
AAAAGIRSGDIIMSVDGRPVGASLENSAQVAEYIRTCNGRDILFGIERGA
QQLDIKVTPTCCTRDGGSLVGVQLNTRVTMQRVRKAPLPSLVRSTNAEFS
RLWTQTWVGLSSVLSNFEQSSKNLSGPIGVVSMGAQLAREDSAALFTFCA
VISINLAVINSLPLPALDGGQMVLLAVEFVRGSPVSLRVQDAINRTALLL
FLAFSGVLVVGDLERLNIVGFLQRLLS*
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mRNA from alignment at ScGOVlb_3404:353606..354739+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11438.t1 ID=Gvermi11438.t1|Name=Gvermi11438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at ScGOVlb_3404:353606..354739+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGCAAACGTCGCCAGCACCGGCGCCGGCGTGCTCGTGCTCGGCTTCAT
CGTGTTTGTGCACGAGTGCGGCCACTTTGTGGCCGCGCGCGCGCAGAACA
TCCGCGTCAAGAACTTCTCCATCGGCTTCGGCCCCAAGCTGTACGCCTTC
ACGCCGCGCGGCTCCGACACCGAGTTCACGCTGCGCCTGCTCCCGCTGGG
CGGCTACGTCGCCTTCCCGGAGCACGTGCGCGTGGACGAGCGCAGCGGCG
AGCAGGTCGTCAGCGACGACGCCGACCTGCTGCAGAACCGCCCGCTGCTG
GACCGCGCCATCGTCATCTCGGCGGGCGTGGTGGCCAACGTCGCGCTCGC
GTGGGCGGCCATCTTCGCGTCCGTGTCGCTGCTGGGCGTGCCCACGTACT
CGTTTGAGCGCGGCGTCAAGATCGAGAACGTGGTGGACGcgcgcggcgcc
gccgccgccgccgGCATCCGCTCCGGCGACATCATCATGTCGGTGGACGG
GCGGCCGGTGGGCGCCTCGCTGGAAAACTCGGCGCAGGTGGCCGAGTACA
TCCGCACATGCAACGGACGCGACATTTTGTTCGGCATCGAGCGCGGCGCG
CAGCAGCTGGACATCAAGGTGACGCCCACGTGCTGCACGCGCGATGGAGG
CTCGCTGGTGGGCGTGCAGCTCAACACGCGCGTGACGATGCAGCGCGTGC
GCAAGGCGCCGCTTCCCTCGCTGGTGCGCAGCACCAACGCCGAGTTCAGT
CGGCTGTGGACGCAGACGTGGGTCGGGCTCAGCTCGGTGCTGAGCAACTT
TGAGCAGTCGTCCAAGAACCTGTCGGGCCCCATCGGGGTGGTGTCCATGG
GGGCGCAGCTGGCGCGGGAGGATTCGGCGGCGCTGTTCACGTTTTGCGCC
GTGATCAGCATCAATCTGGCGGTGATCAACTCGCTGCCGCTGCCAGCGCT
GGACGGTGGACAGATGGTGCTGCTGGCGGTGGAGTTTGTGCGCGGCAGCC
CGGTATCGCTGCGCGTACAGGACGCGATCAATCGCACGGCGCTGCTGCTG
TTTCTGGCGTTTTCTGGGGTGCTGGTGGTGGGCGACTTGGAACGGCTCAA
CATTGTGGGTTTTCTGCAACGGCTGTTGAGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:353606..354739+

>Gvermi11438.t1 ID=Gvermi11438.t1|Name=Gvermi11438.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1134bp|location=Sequence derived from alignment at ScGOVlb_3404:353606..354739+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGCAAACGTCGCCAGCACCGGCGCCGGCGTGCTCGTGCTCGGCTTCAT
CGTGTTTGTGCACGAGTGCGGCCACTTTGTGGCCGCGCGCGCGCAGAACA
TCCGCGTCAAGAACTTCTCCATCGGCTTCGGCCCCAAGCTGTACGCCTTC
ACGCCGCGCGGCTCCGACACCGAGTTCACGCTGCGCCTGCTCCCGCTGGG
CGGCTACGTCGCCTTCCCGGAGCACGTGCGCGTGGACGAGCGCAGCGGCG
AGCAGGTCGTCAGCGACGACGCCGACCTGCTGCAGAACCGCCCGCTGCTG
GACCGCGCCATCGTCATCTCGGCGGGCGTGGTGGCCAACGTCGCGCTCGC
GTGGGCGGCCATCTTCGCGTCCGTGTCGCTGCTGGGCGTGCCCACGTACT
CGTTTGAGCGCGGCGTCAAGATCGAGAACGTGGTGGACGcgcgcggcgcc
gccgccgccgccgGCATCCGCTCCGGCGACATCATCATGTCGGTGGACGG
GCGGCCGGTGGGCGCCTCGCTGGAAAACTCGGCGCAGGTGGCCGAGTACA
TCCGCACATGCAACGGACGCGACATTTTGTTCGGCATCGAGCGCGGCGCG
CAGCAGCTGGACATCAAGGTGACGCCCACGTGCTGCACGCGCGATGGAGG
CTCGCTGGTGGGCGTGCAGCTCAACACGCGCGTGACGATGCAGCGCGTGC
GCAAGGCGCCGCTTCCCTCGCTGGTGCGCAGCACCAACGCCGAGTTCAGT
CGGCTGTGGACGCAGACGTGGGTCGGGCTCAGCTCGGTGCTGAGCAACTT
TGAGCAGTCGTCCAAGAACCTGTCGGGCCCCATCGGGGTGGTGTCCATGG
GGGCGCAGCTGGCGCGGGAGGATTCGGCGGCGCTGTTCACGTTTTGCGCC
GTGATCAGCATCAATCTGGCGGTGATCAACTCGCTGCCGCTGCCAGCGCT
GGACGGTGGACAGATGGTGCTGCTGGCGGTGGAGTTTGTGCGCGGCAGCC
CGGTATCGCTGCGCGTACAGGACGCGATCAATCGCACGGCGCTGCTGCTG
TTTCTGGCGTTTTCTGGGGTGCTGGTGGTGGGCGACTTGGAACGGCTCAA
CATTGTGGGTTTTCTGCAACGGCTGTTGAGCTGA
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