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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 130081.XP_005706800.1 |
| Preferred name | LIG1 |
| PFAMs | DNA_ligase_A_C,DNA_ligase_A_M,DNA_ligase_A_N |
| Max annot lvl | 2759|Eukaryota |
| KEGG rclass | RC00005 |
| KEGG ko | ko:K10747 |
| KEGG Reaction | R00381,R00382,R10822,R10823 |
| KEGG Pathway | ko03030,ko03410,ko03420,ko03430,map03030,map03410,map03420,map03430 |
| GOs | GO:0000012,GO:0000228,GO:0000278,GO:0000302,GO:0000726,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003909,GO:0003910,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006266,GO:0006271,GO:0006273,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006297,GO:0006298,GO:0006302,GO:0006303,GO:0006304,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009636,GO:0009653,GO:0009987,GO:0010035,GO:0016043,GO:0016070,GO:0016874,GO:0016886,GO:0022402,GO:0022616,GO:0031974,GO:0031981,GO:0032502,GO:0033260,GO:0033554,GO:0033567,GO:0034641,GO:0034645,GO:0035510,GO:0035753,GO:0042221,GO:0042493,GO:0042542,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043570,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044728,GO:0044786,GO:0046483,GO:0046677,GO:0048856,GO:0050896,GO:0051103,GO:0051276,GO:0051716,GO:0070013,GO:0070988,GO:0071704,GO:0071840,GO:0080111,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901363,GO:1901576,GO:1901700,GO:1902969,GO:1903047,GO:1903461 |
| Evalue | 5.16e-221 |
| EggNOG OGs | COG1793@1|root,KOG0967@2759|Eukaryota |
| EC | 6.5.1.1,6.5.1.6,6.5.1.7 |
| Description | DNA ligase (ATP) activity |
| COG category | L |
| BRITE | ko00000,ko00001,ko01000,ko03032,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi11437.t1 ID=Gvermi11437.t1|Name=Gvermi11437.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=749bp MRKQRTLTSFFRPRGAAASPSAKRTPSAALKRRAEAPGSSPQKRPRPPSA PSPTLSAEPAAEPAAEPAAEPAAEPAAEPAAKTVANPATKPATKPATKPA PASFACPRGKPVPYAALADAFTKVEAITGRLHIQALLCALFRDVIAASPD DLVRTIYLCVNRLAPAHHGIELGVGDAILLKTLSSVTGRSLPALKATYSK LGDLGDVAFVSRTTQTTMFPPPPLTVRKVFSELRYIASVSGKNAQQQKQA IILKMFVAASKTEAKYLARALSGKLRIHLADKTVIAALAAAIVLQNEHLD NDFLLHADGTKKNRLSEREERVQQKVKDATAVLNAVYCRLPVWDIIVPNV LQFGAIDERLSEACQLLPGVPISPMLAKPTKAISQVLERFSEASFTCEYK YDGERAQIHRLSDGSMKIYSRNAENLTPKYPDLVHQLPLALRDKYKRSSF IIDSEAVAYDVERKRILPFQELQGRKRKDVNAEDIKVKVCIFAFDLLYFD GNSLIEQPFNHRRSILLDAFEPQEGRFMFAKGHDSSNPEQIMELLNASVK EGCEGLMVKALDGENSTYEPANRSQNWLKVKKDYLEGCGDSLDLVPIGGY RGRGKRTGAYGAFLLACYDADSEEYQSVCKIGTGFSEAQLEEFAKFFNDE EQNRISKTEKSYYRTPSISALQPDVWFEPVQVWEVKCADLSISPQHTAGI GRVDGDKGIALRFPRFIRVREDKGPEDATTAEQVVEMYLNQSAVADDG* back to topspliced messenger RNA >Gvermi11437.t1 ID=Gvermi11437.t1|Name=Gvermi11437.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2247bp|location=Sequence derived from alignment at ScGOVlb_3404:349912..352158- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCGCAAGCAGCGCACGCTCACGTCCTTCTTCCGCCCGCGCGGCGCCGC CGCCTCGCCGTCGGCGAAGCGCACGCCCTCCGCCGCGCTCAAGCGCCGCG CCGAAGCGCCCGGCTCCTCGCCGCAAAAGCGCCCGCGCCCGCCGTCCGCC CCCTCGCCAACCCTCTCTGCCGAGCCCGCCGCCGAGCCCGCCGCCGAGCC CGCCGCCGAGCCCGCTGCCGAGCCCGCTGCCGAGCCCGCCGCCAAAACCG TCGCCAACCCCGCCACCAAGCCCGCCACCAAGCCCGCCACCAAGCCCGCC CCCGCGTCTTTCGCGTGCCCTCGCGGAAAGCCCGTCCCGTATGCCGCCCT GGCCGACGCCTTCACCAAGGTGGAGGCCATCACCGGCCGCCTGCACATCC AGGCGCTGCTCTGCGCCCTGTTCCGCGACGTCATAGCCGCCTCGCCGGAC GACCTGGTGCGCACCATTTACCTCTGTGTCAACAGGCTGGCCCCCGCGCA CCACGGCATTGAACTCGGCGTGGGCGACGCCATTTTGCTCAAGACCTTGT CCTCGGTCACGGGCCGTTCGCTGCCCGCCCTCAAGGCCACGTACAGCAAG CTCGGCGACCTGGGCGATGTCGCCTTCGTTTCGAGGACCACGCAAACCAC AATGTTTCCGCCCCCGCCGCTCACCGTGCGCAAGGTCTTTTCCGAGTTGC GCTACATTGCCTCCGTGTCGGGCAAGAATGCCCAGCAACAGAAGCAAGCC ATCATTCTCAAGATGTTCGTGGCGGCCTCCAAGACGGAGGCCAAGTATTT GGCGCGTGCGCTGTCGGGAAAGCTACGTATCCACCTGGCAGACAAGACCG TCATCGCCGCCCTGGCCGCCGCCATCGTGCTGCAAAATGAACACCTCGAC AATGATTTCCTGCTGCACGCTGACGGCACCAAGAAGAATCGCCTGTCAGA ACGGGAGGAACGCGTGCAACAAAAGGTCAAAGACGCCACGGCCGTGTTGA ATGCCGTGTATTGTCGACTGCCGGTGTGGGACATCATCGTTCCCAACGTG TTGCAGTTCGGTGCAATTGACGAGCGCTTGAGCGAAGCCTGCCAGTTGTT GCCGGGCGTTCCGATTTCCCCCATGCTGGCAAAGCCCACCAAAGCCATCT CTCAGGTGTTGGAGCGCTTTTCGGAGGCCTCTTTCACGTGTGAGTACAAG TACGACGGTGAACGCGCGCAGATTCATCGCCTTTCAGATGGCTCCATGAA AATCTATAGTAGGAATGCCGAGAACTTGACGCCCAAGTATCCGGATCTGG TGCACCAGTTGCCCTTGGCTTTGCGCGACAAGTACAAGCGCTCATCATTC ATCATTGACTCTGAGGCGGTGGCGTACGATGTTGAGCGAAAGAGGATCTT GCCGTTCCAGGAGCTGCAGGGTCGCAAACGAAAGGATGTGAATGCTGAGG ACATCAAGGTGAAGGTCTGTATATTTGCATTTGACTTGCTCTACTTTGAT GGAAACAGCCTGATCGAGCAACCCTTCAACCACAGACGAAGCATTCTGCT CGACGCATTTGAGCCGCAGGAGGGCAGATTCATGTTCGCAAAGGGCCACG ATTCAAGCAATCCCGAGCAGATTATGGAATTGCTGAATGCCAGCGTGAAG GAGGGCTGTGAGGGGCTGATGGTGAAGGCGCTTGATGGTGAAAATTCTAC CTATGAGCCGGCAAATCGCAGTCAGAACTGGCTCAAGGTGAAGAAAGATT ACCTTGAGGGATGCGGAGACTCGCTGGATCTAGTGCCTATTGGCGGGTAT CGAGGTCGTGGGAAAAGAACGGGCGCGTACGGTGCGTTTCTACTGGCGTG TTACGACGCGGACAGCGAGGAATACCAGTCGGTGTGCAAGATTGGTACGG GCTTCTCGGAGGCGCAGCTGGAGGAGTTTGCAAAATTCTTTAATGATGAG GAGCAAAACCGGATCAGTAAGACGGAAAAGTCATACTATCGGACACCGAG CATTAGTGCTTTGCAGCCGGATGTTTGGTTCGAGCCCGTACAGGTTTGGG AGGTGAAGTGTGCGGATTTGTCAATTTCACCGCAGCATACGGCGGGGATT GGACGCGTTGATGGTGACAAGGGTATTGCCCTTAGGTTTCCGAGATTTAT TCGGGTGAGAGAGGATAAGGGGCCAGAGGATGCCACAACGGCGGAACAGG TAGTGGAGATGTACTTGAATCAATCGGCGGTTGCGGATGATGGATGA back to topprotein sequence of Gvermi11437.t1 >Gvermi11437.t1 ID=Gvermi11437.t1|Name=Gvermi11437.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=749bp
MRKQRTLTSFFRPRGAAASPSAKRTPSAALKRRAEAPGSSPQKRPRPPSA PSPTLSAEPAAEPAAEPAAEPAAEPAAEPAAKTVANPATKPATKPATKPA PASFACPRGKPVPYAALADAFTKVEAITGRLHIQALLCALFRDVIAASPD DLVRTIYLCVNRLAPAHHGIELGVGDAILLKTLSSVTGRSLPALKATYSK LGDLGDVAFVSRTTQTTMFPPPPLTVRKVFSELRYIASVSGKNAQQQKQA IILKMFVAASKTEAKYLARALSGKLRIHLADKTVIAALAAAIVLQNEHLD NDFLLHADGTKKNRLSEREERVQQKVKDATAVLNAVYCRLPVWDIIVPNV LQFGAIDERLSEACQLLPGVPISPMLAKPTKAISQVLERFSEASFTCEYK YDGERAQIHRLSDGSMKIYSRNAENLTPKYPDLVHQLPLALRDKYKRSSF IIDSEAVAYDVERKRILPFQELQGRKRKDVNAEDIKVKVCIFAFDLLYFD GNSLIEQPFNHRRSILLDAFEPQEGRFMFAKGHDSSNPEQIMELLNASVK EGCEGLMVKALDGENSTYEPANRSQNWLKVKKDYLEGCGDSLDLVPIGGY RGRGKRTGAYGAFLLACYDADSEEYQSVCKIGTGFSEAQLEEFAKFFNDE EQNRISKTEKSYYRTPSISALQPDVWFEPVQVWEVKCADLSISPQHTAGI GRVDGDKGIALRFPRFIRVREDKGPEDATTAEQVVEMYLNQSAVADDG* back to topmRNA from alignment at ScGOVlb_3404:349912..352158- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi11437.t1 ID=Gvermi11437.t1|Name=Gvermi11437.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2247bp|location=Sequence derived from alignment at ScGOVlb_3404:349912..352158- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCGCAAGCAGCGCACGCTCACGTCCTTCTTCCGCCCGCGCGGCGCCGC
CGCCTCGCCGTCGGCGAAGCGCACGCCCTCCGCCGCGCTCAAGCGCCGCG
CCGAAGCGCCCGGCTCCTCGCCGCAAAAGCGCCCGCGCCCGCCGTCCGCC
CCCTCGCCAACCCTCTCTGCCGAGCCCGCCGCCGAGCCCGCCGCCGAGCC
CGCCGCCGAGCCCGCTGCCGAGCCCGCTGCCGAGCCCGCCGCCAAAACCG
TCGCCAACCCCGCCACCAAGCCCGCCACCAAGCCCGCCACCAAGCCCGCC
CCCGCGTCTTTCGCGTGCCCTCGCGGAAAGCCCGTCCCGTATGCCGCCCT
GGCCGACGCCTTCACCAAGGTGGAGGCCATCACCGGCCGCCTGCACATCC
AGGCGCTGCTCTGCGCCCTGTTCCGCGACGTCATAGCCGCCTCGCCGGAC
GACCTGGTGCGCACCATTTACCTCTGTGTCAACAGGCTGGCCCCCGCGCA
CCACGGCATTGAACTCGGCGTGGGCGACGCCATTTTGCTCAAGACCTTGT
CCTCGGTCACGGGCCGTTCGCTGCCCGCCCTCAAGGCCACGTACAGCAAG
CTCGGCGACCTGGGCGATGTCGCCTTCGTTTCGAGGACCACGCAAACCAC
AATGTTTCCGCCCCCGCCGCTCACCGTGCGCAAGGTCTTTTCCGAGTTGC
GCTACATTGCCTCCGTGTCGGGCAAGAATGCCCAGCAACAGAAGCAAGCC
ATCATTCTCAAGATGTTCGTGGCGGCCTCCAAGACGGAGGCCAAGTATTT
GGCGCGTGCGCTGTCGGGAAAGCTACGTATCCACCTGGCAGACAAGACCG
TCATCGCCGCCCTGGCCGCCGCCATCGTGCTGCAAAATGAACACCTCGAC
AATGATTTCCTGCTGCACGCTGACGGCACCAAGAAGAATCGCCTGTCAGA
ACGGGAGGAACGCGTGCAACAAAAGGTCAAAGACGCCACGGCCGTGTTGA
ATGCCGTGTATTGTCGACTGCCGGTGTGGGACATCATCGTTCCCAACGTG
TTGCAGTTCGGTGCAATTGACGAGCGCTTGAGCGAAGCCTGCCAGTTGTT
GCCGGGCGTTCCGATTTCCCCCATGCTGGCAAAGCCCACCAAAGCCATCT
CTCAGGTGTTGGAGCGCTTTTCGGAGGCCTCTTTCACGTGTGAGTACAAG
TACGACGGTGAACGCGCGCAGATTCATCGCCTTTCAGATGGCTCCATGAA
AATCTATAGTAGGAATGCCGAGAACTTGACGCCCAAGTATCCGGATCTGG
TGCACCAGTTGCCCTTGGCTTTGCGCGACAAGTACAAGCGCTCATCATTC
ATCATTGACTCTGAGGCGGTGGCGTACGATGTTGAGCGAAAGAGGATCTT
GCCGTTCCAGGAGCTGCAGGGTCGCAAACGAAAGGATGTGAATGCTGAGG
ACATCAAGGTGAAGGTCTGTATATTTGCATTTGACTTGCTCTACTTTGAT
GGAAACAGCCTGATCGAGCAACCCTTCAACCACAGACGAAGCATTCTGCT
CGACGCATTTGAGCCGCAGGAGGGCAGATTCATGTTCGCAAAGGGCCACG
ATTCAAGCAATCCCGAGCAGATTATGGAATTGCTGAATGCCAGCGTGAAG
GAGGGCTGTGAGGGGCTGATGGTGAAGGCGCTTGATGGTGAAAATTCTAC
CTATGAGCCGGCAAATCGCAGTCAGAACTGGCTCAAGGTGAAGAAAGATT
ACCTTGAGGGATGCGGAGACTCGCTGGATCTAGTGCCTATTGGCGGGTAT
CGAGGTCGTGGGAAAAGAACGGGCGCGTACGGTGCGTTTCTACTGGCGTG
TTACGACGCGGACAGCGAGGAATACCAGTCGGTGTGCAAGATTGGTACGG
GCTTCTCGGAGGCGCAGCTGGAGGAGTTTGCAAAATTCTTTAATGATGAG
GAGCAAAACCGGATCAGTAAGACGGAAAAGTCATACTATCGGACACCGAG
CATTAGTGCTTTGCAGCCGGATGTTTGGTTCGAGCCCGTACAGGTTTGGG
AGGTGAAGTGTGCGGATTTGTCAATTTCACCGCAGCATACGGCGGGGATT
GGACGCGTTGATGGTGACAAGGGTATTGCCCTTAGGTTTCCGAGATTTAT
TCGGGTGAGAGAGGATAAGGGGCCAGAGGATGCCACAACGGCGGAACAGG
TAGTGGAGATGTACTTGAATCAATCGGCGGTTGCGGATGATGGATGA back to topCoding sequence (CDS) from alignment at ScGOVlb_3404:349912..352158- >Gvermi11437.t1 ID=Gvermi11437.t1|Name=Gvermi11437.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2247bp|location=Sequence derived from alignment at ScGOVlb_3404:349912..352158- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCGCAAGCAGCGCACGCTCACGTCCTTCTTCCGCCCGCGCGGCGCCGC CGCCTCGCCGTCGGCGAAGCGCACGCCCTCCGCCGCGCTCAAGCGCCGCG CCGAAGCGCCCGGCTCCTCGCCGCAAAAGCGCCCGCGCCCGCCGTCCGCC CCCTCGCCAACCCTCTCTGCCGAGCCCGCCGCCGAGCCCGCCGCCGAGCC CGCCGCCGAGCCCGCTGCCGAGCCCGCTGCCGAGCCCGCCGCCAAAACCG TCGCCAACCCCGCCACCAAGCCCGCCACCAAGCCCGCCACCAAGCCCGCC CCCGCGTCTTTCGCGTGCCCTCGCGGAAAGCCCGTCCCGTATGCCGCCCT GGCCGACGCCTTCACCAAGGTGGAGGCCATCACCGGCCGCCTGCACATCC AGGCGCTGCTCTGCGCCCTGTTCCGCGACGTCATAGCCGCCTCGCCGGAC GACCTGGTGCGCACCATTTACCTCTGTGTCAACAGGCTGGCCCCCGCGCA CCACGGCATTGAACTCGGCGTGGGCGACGCCATTTTGCTCAAGACCTTGT CCTCGGTCACGGGCCGTTCGCTGCCCGCCCTCAAGGCCACGTACAGCAAG CTCGGCGACCTGGGCGATGTCGCCTTCGTTTCGAGGACCACGCAAACCAC AATGTTTCCGCCCCCGCCGCTCACCGTGCGCAAGGTCTTTTCCGAGTTGC GCTACATTGCCTCCGTGTCGGGCAAGAATGCCCAGCAACAGAAGCAAGCC ATCATTCTCAAGATGTTCGTGGCGGCCTCCAAGACGGAGGCCAAGTATTT GGCGCGTGCGCTGTCGGGAAAGCTACGTATCCACCTGGCAGACAAGACCG TCATCGCCGCCCTGGCCGCCGCCATCGTGCTGCAAAATGAACACCTCGAC AATGATTTCCTGCTGCACGCTGACGGCACCAAGAAGAATCGCCTGTCAGA ACGGGAGGAACGCGTGCAACAAAAGGTCAAAGACGCCACGGCCGTGTTGA ATGCCGTGTATTGTCGACTGCCGGTGTGGGACATCATCGTTCCCAACGTG TTGCAGTTCGGTGCAATTGACGAGCGCTTGAGCGAAGCCTGCCAGTTGTT GCCGGGCGTTCCGATTTCCCCCATGCTGGCAAAGCCCACCAAAGCCATCT CTCAGGTGTTGGAGCGCTTTTCGGAGGCCTCTTTCACGTGTGAGTACAAG TACGACGGTGAACGCGCGCAGATTCATCGCCTTTCAGATGGCTCCATGAA AATCTATAGTAGGAATGCCGAGAACTTGACGCCCAAGTATCCGGATCTGG TGCACCAGTTGCCCTTGGCTTTGCGCGACAAGTACAAGCGCTCATCATTC ATCATTGACTCTGAGGCGGTGGCGTACGATGTTGAGCGAAAGAGGATCTT GCCGTTCCAGGAGCTGCAGGGTCGCAAACGAAAGGATGTGAATGCTGAGG ACATCAAGGTGAAGGTCTGTATATTTGCATTTGACTTGCTCTACTTTGAT GGAAACAGCCTGATCGAGCAACCCTTCAACCACAGACGAAGCATTCTGCT CGACGCATTTGAGCCGCAGGAGGGCAGATTCATGTTCGCAAAGGGCCACG ATTCAAGCAATCCCGAGCAGATTATGGAATTGCTGAATGCCAGCGTGAAG GAGGGCTGTGAGGGGCTGATGGTGAAGGCGCTTGATGGTGAAAATTCTAC CTATGAGCCGGCAAATCGCAGTCAGAACTGGCTCAAGGTGAAGAAAGATT ACCTTGAGGGATGCGGAGACTCGCTGGATCTAGTGCCTATTGGCGGGTAT CGAGGTCGTGGGAAAAGAACGGGCGCGTACGGTGCGTTTCTACTGGCGTG TTACGACGCGGACAGCGAGGAATACCAGTCGGTGTGCAAGATTGGTACGG GCTTCTCGGAGGCGCAGCTGGAGGAGTTTGCAAAATTCTTTAATGATGAG GAGCAAAACCGGATCAGTAAGACGGAAAAGTCATACTATCGGACACCGAG CATTAGTGCTTTGCAGCCGGATGTTTGGTTCGAGCCCGTACAGGTTTGGG AGGTGAAGTGTGCGGATTTGTCAATTTCACCGCAGCATACGGCGGGGATT GGACGCGTTGATGGTGACAAGGGTATTGCCCTTAGGTTTCCGAGATTTAT TCGGGTGAGAGAGGATAAGGGGCCAGAGGATGCCACAACGGCGGAACAGG TAGTGGAGATGTACTTGAATCAATCGGCGGTTGCGGATGATGGATGA back to top
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