Gvermi11428.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11428.t1
Unique NameGvermi11428.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length485
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:185241..186695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11428Gvermi11428Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 185241..186695 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11428.t1.start1Gvermi11428.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 185241..185243 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11428.t1.CDS1Gvermi11428.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 185241..186695 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11428.t1.exon1Gvermi11428.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 185241..186695 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11428.t1.stop1Gvermi11428.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 186693..186695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11428.t1Gvermi11428.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 185241..186695 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11428.t1 ID=Gvermi11428.t1|Name=Gvermi11428.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=485bp
MAMSLLVSLLLALTVPSALANCPTPLPLPSSQPKKWFAGRYFFFSADEPI
ATTLRKNTRFVRHVDATITVLENVERVIVQEQRRRLSAPDSDLALRKPRI
CNLEDSAWGTSADDQMLLRGYPENLATSCITDYEFPDRAEEARLREGVQD
IASIVHSSAPEIAEFARTNFSEPSGIYNWPYSTKTEDCYVNVLGAFRTGA
RWYLNIGITNWNQQNHVGEFARQYINENIGRGCRAGPMTLYVRPKGNKTH
TQRSGTTMIISHRGEAGAAVFKGIPLKENLAVIRALNEAQRYSQQVSDAL
SPSSIAILVLPLALNMIPIALLADVSTTATLIYAMLSDVLTVFPLGIKGV
ELISIGSDVYYGSVLRMSSDSSGSMSEMAAAEAYVAQCFSKKNVLPTGIV
FLTGSIVFMILGLLAEIVAKRYAIRHRRRLYGRISLSSSRSSSSAAEQSR
SRSNSFPMNEVRGAEHFGMELDSYESAYNDDHRL*
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spliced messenger RNA

>Gvermi11428.t1 ID=Gvermi11428.t1|Name=Gvermi11428.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1455bp|location=Sequence derived from alignment at ScGOVlb_3404:185241..186695+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCATGTCACTCCTTGTTTCGCTTCTCCTCGCGCTCACCGTTCCAAG
CGCGCTTGCCAACTGCCCCACTCCTCTTCCGCTTCCCTCTTCCCAACCAA
AGAAATGGTTCGCAGGCCGCTACTTTTTCTTCAGCGCCGACGAGCCCATC
GCCACCACCCTGCGAAAGAACACCCGCTTCGTTCGACATGTGGACGCCAC
CATCACCGTGCTCGAAAACGTCGAGCGCGTCATTGTGCAAGAGCAGCGCC
GCCGACTGTCCGCCCCTGACTCCGACCTCGCCCTCCGCAAGCCCCGAATC
TGCAACCTGGAGGACAGCGCGTGGGGCACTTCGGCCGACGATCAGATGCT
CCTGCGCGGCTACCCGGAAAACCTCGCCACGTCCTGCATCACCGACTATG
AGTTCCCGGACCGCGCCGAAGAGGCCCGCCTGCGCGAGGGCGTGCAGGAC
ATCGCTTCCATCGTCCACAGCAGCGCGCCGGAGATCGCCGAGTTTGCGCG
CACCAACTTTTCCGAGCCGTCGGGCATCTACAACTGGCCCTACTCCACCA
AGACCGAGGACTGCTACGTCAACGTGCTGGGCGCCTTCCGCACGGGCGCC
CGCTGGTACCTCAACATCGGCATTACCAACTGGAACCAGCAGAACCACGT
GGGCGAGTTCGCCCGCCAGTACATCAACGAGAACATCGGCCGCGGCTGCC
GCGCCGGCCCCATGACGCTCTACGTCAGACCGAAAGGCAACAAAACGCAC
ACGCAGCGCAGCGGCACCACGATGATTATCTCGCACCGCGGCGAGGCCGG
CGCCGCCGTGTTCAAGGGCATCCCGCTCAAGGAGAACCTCGCCGTCATCC
GCGCGCTGAATGAGGCGCAGCGCTACTCGCAGCAGGTGAGCGACGCGCTC
AGCCCGTCCAGCATCGCCATTCTCGTGCTGCCGCTCGCGCTCAACATGAT
TCCCATCGCGCTGCTGGCCGACGTCAGCACCACGGCCACTCTCATCTACG
CCATGCTCAGCGATGTTCTCACCGTCTTCCCGCTCGGCATCAAAGGCGTC
GAGCTCATTTCGATCGGTTCCGACGTGTACTACGGATCCGTTCTGCGCAT
GTCATCCGACTCGAGCGGAAGCATGTCGGAGATGGCTGCGGCCGAGGCGT
ACGTCGCGCAGTGCTTCTCGAAGAAAAACGTCTTGCCGACGGGCATTGTC
TTCTTGACCGGCTCTATCGTCTTCATGATACTCGGCCTGCTCGCTGAGAT
TGTCGCCAAGCGATACGCCATCAGGCACCGTCGCAGGTTGTACGGAAGAA
TCTCGCTGTCCAGTTCGCGATCGTCATCGAGCGCGGCGGAGCAATCGCGC
TCGAGGAGCAACAGCTTCCCTATGAACGAGGTCAGAGGCGCTGAACATTT
TGGCATGGAATTAGATTCGTACGAGAGCGCGTACAACGATGACCACAGAT
TATGA
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protein sequence of Gvermi11428.t1

>Gvermi11428.t1 ID=Gvermi11428.t1|Name=Gvermi11428.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=485bp
MAMSLLVSLLLALTVPSALANCPTPLPLPSSQPKKWFAGRYFFFSADEPI
ATTLRKNTRFVRHVDATITVLENVERVIVQEQRRRLSAPDSDLALRKPRI
CNLEDSAWGTSADDQMLLRGYPENLATSCITDYEFPDRAEEARLREGVQD
IASIVHSSAPEIAEFARTNFSEPSGIYNWPYSTKTEDCYVNVLGAFRTGA
RWYLNIGITNWNQQNHVGEFARQYINENIGRGCRAGPMTLYVRPKGNKTH
TQRSGTTMIISHRGEAGAAVFKGIPLKENLAVIRALNEAQRYSQQVSDAL
SPSSIAILVLPLALNMIPIALLADVSTTATLIYAMLSDVLTVFPLGIKGV
ELISIGSDVYYGSVLRMSSDSSGSMSEMAAAEAYVAQCFSKKNVLPTGIV
FLTGSIVFMILGLLAEIVAKRYAIRHRRRLYGRISLSSSRSSSSAAEQSR
SRSNSFPMNEVRGAEHFGMELDSYESAYNDDHRL*
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mRNA from alignment at ScGOVlb_3404:185241..186695+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11428.t1 ID=Gvermi11428.t1|Name=Gvermi11428.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1455bp|location=Sequence derived from alignment at ScGOVlb_3404:185241..186695+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCATGTCACTCCTTGTTTCGCTTCTCCTCGCGCTCACCGTTCCAAG
CGCGCTTGCCAACTGCCCCACTCCTCTTCCGCTTCCCTCTTCCCAACCAA
AGAAATGGTTCGCAGGCCGCTACTTTTTCTTCAGCGCCGACGAGCCCATC
GCCACCACCCTGCGAAAGAACACCCGCTTCGTTCGACATGTGGACGCCAC
CATCACCGTGCTCGAAAACGTCGAGCGCGTCATTGTGCAAGAGCAGCGCC
GCCGACTGTCCGCCCCTGACTCCGACCTCGCCCTCCGCAAGCCCCGAATC
TGCAACCTGGAGGACAGCGCGTGGGGCACTTCGGCCGACGATCAGATGCT
CCTGCGCGGCTACCCGGAAAACCTCGCCACGTCCTGCATCACCGACTATG
AGTTCCCGGACCGCGCCGAAGAGGCCCGCCTGCGCGAGGGCGTGCAGGAC
ATCGCTTCCATCGTCCACAGCAGCGCGCCGGAGATCGCCGAGTTTGCGCG
CACCAACTTTTCCGAGCCGTCGGGCATCTACAACTGGCCCTACTCCACCA
AGACCGAGGACTGCTACGTCAACGTGCTGGGCGCCTTCCGCACGGGCGCC
CGCTGGTACCTCAACATCGGCATTACCAACTGGAACCAGCAGAACCACGT
GGGCGAGTTCGCCCGCCAGTACATCAACGAGAACATCGGCCGCGGCTGCC
GCGCCGGCCCCATGACGCTCTACGTCAGACCGAAAGGCAACAAAACGCAC
ACGCAGCGCAGCGGCACCACGATGATTATCTCGCACCGCGGCGAGGCCGG
CGCCGCCGTGTTCAAGGGCATCCCGCTCAAGGAGAACCTCGCCGTCATCC
GCGCGCTGAATGAGGCGCAGCGCTACTCGCAGCAGGTGAGCGACGCGCTC
AGCCCGTCCAGCATCGCCATTCTCGTGCTGCCGCTCGCGCTCAACATGAT
TCCCATCGCGCTGCTGGCCGACGTCAGCACCACGGCCACTCTCATCTACG
CCATGCTCAGCGATGTTCTCACCGTCTTCCCGCTCGGCATCAAAGGCGTC
GAGCTCATTTCGATCGGTTCCGACGTGTACTACGGATCCGTTCTGCGCAT
GTCATCCGACTCGAGCGGAAGCATGTCGGAGATGGCTGCGGCCGAGGCGT
ACGTCGCGCAGTGCTTCTCGAAGAAAAACGTCTTGCCGACGGGCATTGTC
TTCTTGACCGGCTCTATCGTCTTCATGATACTCGGCCTGCTCGCTGAGAT
TGTCGCCAAGCGATACGCCATCAGGCACCGTCGCAGGTTGTACGGAAGAA
TCTCGCTGTCCAGTTCGCGATCGTCATCGAGCGCGGCGGAGCAATCGCGC
TCGAGGAGCAACAGCTTCCCTATGAACGAGGTCAGAGGCGCTGAACATTT
TGGCATGGAATTAGATTCGTACGAGAGCGCGTACAACGATGACCACAGAT
TATGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:185241..186695+

>Gvermi11428.t1 ID=Gvermi11428.t1|Name=Gvermi11428.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1455bp|location=Sequence derived from alignment at ScGOVlb_3404:185241..186695+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCATGTCACTCCTTGTTTCGCTTCTCCTCGCGCTCACCGTTCCAAG
CGCGCTTGCCAACTGCCCCACTCCTCTTCCGCTTCCCTCTTCCCAACCAA
AGAAATGGTTCGCAGGCCGCTACTTTTTCTTCAGCGCCGACGAGCCCATC
GCCACCACCCTGCGAAAGAACACCCGCTTCGTTCGACATGTGGACGCCAC
CATCACCGTGCTCGAAAACGTCGAGCGCGTCATTGTGCAAGAGCAGCGCC
GCCGACTGTCCGCCCCTGACTCCGACCTCGCCCTCCGCAAGCCCCGAATC
TGCAACCTGGAGGACAGCGCGTGGGGCACTTCGGCCGACGATCAGATGCT
CCTGCGCGGCTACCCGGAAAACCTCGCCACGTCCTGCATCACCGACTATG
AGTTCCCGGACCGCGCCGAAGAGGCCCGCCTGCGCGAGGGCGTGCAGGAC
ATCGCTTCCATCGTCCACAGCAGCGCGCCGGAGATCGCCGAGTTTGCGCG
CACCAACTTTTCCGAGCCGTCGGGCATCTACAACTGGCCCTACTCCACCA
AGACCGAGGACTGCTACGTCAACGTGCTGGGCGCCTTCCGCACGGGCGCC
CGCTGGTACCTCAACATCGGCATTACCAACTGGAACCAGCAGAACCACGT
GGGCGAGTTCGCCCGCCAGTACATCAACGAGAACATCGGCCGCGGCTGCC
GCGCCGGCCCCATGACGCTCTACGTCAGACCGAAAGGCAACAAAACGCAC
ACGCAGCGCAGCGGCACCACGATGATTATCTCGCACCGCGGCGAGGCCGG
CGCCGCCGTGTTCAAGGGCATCCCGCTCAAGGAGAACCTCGCCGTCATCC
GCGCGCTGAATGAGGCGCAGCGCTACTCGCAGCAGGTGAGCGACGCGCTC
AGCCCGTCCAGCATCGCCATTCTCGTGCTGCCGCTCGCGCTCAACATGAT
TCCCATCGCGCTGCTGGCCGACGTCAGCACCACGGCCACTCTCATCTACG
CCATGCTCAGCGATGTTCTCACCGTCTTCCCGCTCGGCATCAAAGGCGTC
GAGCTCATTTCGATCGGTTCCGACGTGTACTACGGATCCGTTCTGCGCAT
GTCATCCGACTCGAGCGGAAGCATGTCGGAGATGGCTGCGGCCGAGGCGT
ACGTCGCGCAGTGCTTCTCGAAGAAAAACGTCTTGCCGACGGGCATTGTC
TTCTTGACCGGCTCTATCGTCTTCATGATACTCGGCCTGCTCGCTGAGAT
TGTCGCCAAGCGATACGCCATCAGGCACCGTCGCAGGTTGTACGGAAGAA
TCTCGCTGTCCAGTTCGCGATCGTCATCGAGCGCGGCGGAGCAATCGCGC
TCGAGGAGCAACAGCTTCCCTATGAACGAGGTCAGAGGCGCTGAACATTT
TGGCATGGAATTAGATTCGTACGAGAGCGCGTACAACGATGACCACAGAT
TATGA
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