Gvermi11420.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11420.t1
Unique NameGvermi11420.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length485
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:139255..140902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708000.1
Preferred namePLSCR5
PFAMsScramblase
Max annot lvl2759|Eukaryota
KEGG koko:K04818
KEGG TC1.A.9.1
KEGG Pathwayko04080,map04080
GOsGO:0000981,GO:0000982,GO:0001077,GO:0001228,GO:0001300,GO:0001775,GO:0002237,GO:0002252,GO:0002376,GO:0002520,GO:0002526,GO:0002682,GO:0002684,GO:0002694,GO:0003674,GO:0003700,GO:0005102,GO:0005154,GO:0005215,GO:0005319,GO:0005488,GO:0005509,GO:0005515,GO:0005548,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005794,GO:0005829,GO:0005886,GO:0005887,GO:0006139,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006575,GO:0006629,GO:0006644,GO:0006650,GO:0006658,GO:0006659,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006915,GO:0006950,GO:0006952,GO:0006953,GO:0006954,GO:0006955,GO:0006979,GO:0007009,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007275,GO:0007568,GO:0007569,GO:0007596,GO:0007599,GO:0008150,GO:0008152,GO:0008219,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009605,GO:0009607,GO:0009611,GO:0009615,GO:0009617,GO:0009628,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009898,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010256,GO:0010467,GO:0010468,GO:0010506,GO:0010507,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010639,GO:0010646,GO:0010647,GO:0010821,GO:0010823,GO:0010876,GO:0010911,GO:0010912,GO:0010941,GO:0010942,GO:0012501,GO:0012505,GO:0015711,GO:0015748,GO:0015914,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0017121,GO:0017124,GO:0017128,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0019899,GO:0019904,GO:0023051,GO:0023052,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030168,GO:0031012,GO:0031224,GO:0031225,GO:0031226,GO:0031235,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032091,GO:0032496,GO:0032501,GO:0032502,GO:0032774,GO:0032781,GO:0033003,GO:0033036,GO:0033043,GO:0033500,GO:0033554,GO:0033993,GO:0034097,GO:0034599,GO:0034605,GO:0034641,GO:0034645,GO:0034654,GO:0035455,GO:0035456,GO:0035556,GO:0042060,GO:0042221,GO:0042398,GO:0042592,GO:0042593,GO:0042609,GO:0042632,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043169,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043462,GO:0043900,GO:0043901,GO:0043903,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044271,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045017,GO:0045069,GO:0045071,GO:0045088,GO:0045089,GO:0045121,GO:0045893,GO:0045935,GO:0045944,GO:0046474,GO:0046483,GO:0046486,GO:0046658,GO:0046872,GO:0048306,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048525,GO:0048534,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050792,GO:0050794,GO:0050817,GO:0050865,GO:0050878,GO:0050896,GO:0051098,GO:0051100,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051252,GO:0051254,GO:0051336,GO:0051345,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0055088,GO:0055092,GO:0060255,GO:0060368,GO:0061024,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070782,GO:0070851,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071345,GO:0071396,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090407,GO:0097035,GO:0097190,GO:0097193,GO:0097194,GO:0097659,GO:0098542,GO:0098552,GO:0098562,GO:0098589,GO:0098753,GO:0098805,GO:0098857,GO:0098916,GO:0099536,GO:0099537,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701,GO:1902229,GO:1902231,GO:1902531,GO:1902533,GO:1902680,GO:1903146,GO:1903147,GO:1903506,GO:1903508,GO:1903900,GO:1903901,GO:2000112,GO:2000371,GO:2000373,GO:2001020,GO:2001022,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Evalue2.63e-76
EggNOG OGsKOG0621@1|root,KOG0621@2759|Eukaryota
Descriptionphospholipid scrambling
COG categoryO
BRITEko00000,ko00001,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11420Gvermi11420Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 139255..140902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11420.t1Gvermi11420.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 139255..140902 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11420.t1.stop1Gvermi11420.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 139255..139257 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11420.t1.CDS1Gvermi11420.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 139255..139778 -
Gvermi11420.t1.CDS2Gvermi11420.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 139877..140402 -
Gvermi11420.t1.CDS3Gvermi11420.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 140498..140902 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11420.t1.exon1Gvermi11420.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 139255..139778 -
Gvermi11420.t1.exon2Gvermi11420.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 139877..140402 -
Gvermi11420.t1.exon3Gvermi11420.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 140498..140902 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11420.t1.intron1Gvermi11420.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 139779..139876 -
Gvermi11420.t1.intron2Gvermi11420.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 140403..140497 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11420.t1.start1Gvermi11420.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 140900..140902 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11420.t1 ID=Gvermi11420.t1|Name=Gvermi11420.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=485bp
MRRALFARCPSLRASWRRFSSCTPPRFRNAPTPTHSHFAILRTLAPPPLP
APSALPSCSTLSPTRSRSLCTPDPNPVSKPHAIQPASPADLVLSPPALVV
TREYEWANIIVGFEQANKYTIRAAPAGHVVGYIAEQASLGSAITRNVLRT
RRPFKATVFDKDRNIIFQIRRPLYLLSTSIFVETPDGQPIGEVHMNWHLW
KRRYSLYVHKTQFAVVDSGFLAVDFDMRDVHGKTIASVNKDFTGFARELF
TDARQYVLRMDPSYGLEHDASLIYDAATVRAPAEPHQRAAQTLQPHQRAV
ILGAAIAIDFDYFSLHSRGPGPGIMMMPPIGAPTPAPGVPPGVGAGAGAG
AAAAGADAGTAVGADVLSDAMGASASDSETPYQIPQEQLNKDSSHASSQS
DRWGDEEPFEQDQFANSSQADNADQSQWATFEEPDHGFDDPYADNDAWNA
DSDTWGAGDGGGDEEGGGLGGLFGIIKGIFFDDD*
back to top

spliced messenger RNA

>Gvermi11420.t1 ID=Gvermi11420.t1|Name=Gvermi11420.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1455bp|location=Sequence derived from alignment at ScGOVlb_3404:139255..140902- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGCGCACTGTTCGCACGCTGCCCATCTCTGCGTGCGTCTTGGCG
CCGTTTCTCGTCCTGCACTCCGCCCCGCTTCCGCAATGCTCCAACACCCA
CGCACAGCCACTTTGCCATCCTCCGCACCCTCGCCCCGCCGCCCCTCCCC
GCCCCGTCTGCATTGCCCAGCTGCAGCACACTGTCGCCCACTCGCTCGCG
ATCGCTGTGCACCCCCGACCCCAACCCCGTGTCTAAACCGCATGCCATTC
AACCGGCCTCTCCCGCTGACCTCGTCCTCTCTCCTCCAGCTCTGGTCGTC
ACCCGCGAGTACGAGTGGGCCAACATCATTGTCGGCTTCGAACAAGCAAA
CAAATATACCATACGTGCCGCGCCTGCAGGCCACGTAGTCGGCTACATTG
CAGAACAAGCGTCGCTCGGCAGTGCAATCACCAGAAATGTACTTCGCACC
CGACGCCCGTTTAAGGCCACTGTCTTTGACAAAGATCGAAACATCATCTT
TCAAATACGCCGTCCGCTCTACCTCCTATCAACCTCCATATTCGTCGAAA
CCCCCGACGGCCAGCCCATCGGCGAGGTGCACATGAACTGGCACCTGTGG
AAGAGAAGGTACAGTCTGTACGTCCACAAAACCCAGTTTGCCGTCGTCGA
CTCCGGCTTTCTGGCCGTCGACTTCGACATGCGCGACGTGCACGGCAAAA
CAATCGCCTCGGTCAACAAGGACTTTACGGGCTTTGCGCGCGAGCTGTTC
ACCGATGCGCGCCAGTACGTGCTGCGCATGGACCCGTCGTACGGCCTGGA
GCACGATGCGTCGCTCATCTACGACGCTGCCACAGTGCGCGCCCCTGCCG
AGCCGCACCAGCGCGCTGCCCAAACGCTGCAGCCGCATCAACGCGCAGTC
ATTCTCGGCGCTGCCATTGCCATCGACTTTGATTATTTCAGTCTTCATAG
TCGCGGCCCGGGGCCCGGAATCATGATGATGCCTCCTATTGGAGCACCCA
CACCGGCCCCGGGTGTTCCACCGGGCGTTGGCGCTGGCGCTGGAGCCGGC
GCTGCCGCCGCTGGTGCTGATGCAGGTACCGCTGTGGGTGCTGATGTTTT
GTCCGATGCCATGGGCGCATCTGCATCAGACTCTGAAACGCCATATCAAA
TTCCCCAGGAACAGTTGAACAAAGATTCTTCACACGCATCCTCCCAATCA
GACAGGTGGGGCGATGAGGAGCCATTCGAGCAAGACCAGTTTGCCAATTC
AAGCCAGGCTGACAATGCCGACCAGTCGCAATGGGCCACGTTTGAAGAGC
CAGATCATGGGTTTGATGACCCATACGCGGACAACGACGCATGGAATGCA
GACAGTGACACTTGGGGCGCCGGAGACGGGGGTGGCGACGAAGAAGGCGG
CGGCCTAGGGGGCTTATTCGGTATTATCAAGGGGATCTTTTTCGATGATG
ATTAG
back to top

protein sequence of Gvermi11420.t1

>Gvermi11420.t1 ID=Gvermi11420.t1|Name=Gvermi11420.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=485bp
MRRALFARCPSLRASWRRFSSCTPPRFRNAPTPTHSHFAILRTLAPPPLP
APSALPSCSTLSPTRSRSLCTPDPNPVSKPHAIQPASPADLVLSPPALVV
TREYEWANIIVGFEQANKYTIRAAPAGHVVGYIAEQASLGSAITRNVLRT
RRPFKATVFDKDRNIIFQIRRPLYLLSTSIFVETPDGQPIGEVHMNWHLW
KRRYSLYVHKTQFAVVDSGFLAVDFDMRDVHGKTIASVNKDFTGFARELF
TDARQYVLRMDPSYGLEHDASLIYDAATVRAPAEPHQRAAQTLQPHQRAV
ILGAAIAIDFDYFSLHSRGPGPGIMMMPPIGAPTPAPGVPPGVGAGAGAG
AAAAGADAGTAVGADVLSDAMGASASDSETPYQIPQEQLNKDSSHASSQS
DRWGDEEPFEQDQFANSSQADNADQSQWATFEEPDHGFDDPYADNDAWNA
DSDTWGAGDGGGDEEGGGLGGLFGIIKGIFFDDD*
back to top

mRNA from alignment at ScGOVlb_3404:139255..140902-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11420.t1 ID=Gvermi11420.t1|Name=Gvermi11420.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1648bp|location=Sequence derived from alignment at ScGOVlb_3404:139255..140902- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCGCGCACTGTTCGCACGCTGCCCATCTCTGCGTGCGTCTTGGCG
CCGTTTCTCGTCCTGCACTCCGCCCCGCTTCCGCAATGCTCCAACACCCA
CGCACAGCCACTTTGCCATCCTCCGCACCCTCGCCCCGCCGCCCCTCCCC
GCCCCGTCTGCATTGCCCAGCTGCAGCACACTGTCGCCCACTCGCTCGCG
ATCGCTGTGCACCCCCGACCCCAACCCCGTGTCTAAACCGCATGCCATTC
AACCGGCCTCTCCCGCTGACCTCGTCCTCTCTCCTCCAGCTCTGGTCGTC
ACCCGCGAGTACGAGTGGGCCAACATCATTGTCGGCTTCGAACAAGCAAA
CAAATATACCATACGTGCCGCGCCTGCAGGCCACGTAGTCGGCTACATTG
CAGAAGTATGTATGCACTGCGTGCTCACCACCACATCCGCATGCCGCTTG
CCTTTTGCTTTGCACTAACTGCTTGCAACAATCGTCTCCACCTCAAACAG
CAAGCGTCGCTCGGCAGTGCAATCACCAGAAATGTACTTCGCACCCGACG
CCCGTTTAAGGCCACTGTCTTTGACAAAGATCGAAACATCATCTTTCAAA
TACGCCGTCCGCTCTACCTCCTATCAACCTCCATATTCGTCGAAACCCCC
GACGGCCAGCCCATCGGCGAGGTGCACATGAACTGGCACCTGTGGAAGAG
AAGGTACAGTCTGTACGTCCACAAAACCCAGTTTGCCGTCGTCGACTCCG
GCTTTCTGGCCGTCGACTTCGACATGCGCGACGTGCACGGCAAAACAATC
GCCTCGGTCAACAAGGACTTTACGGGCTTTGCGCGCGAGCTGTTCACCGA
TGCGCGCCAGTACGTGCTGCGCATGGACCCGTCGTACGGCCTGGAGCACG
ATGCGTCGCTCATCTACGACGCTGCCACAGTGCGCGCCCCTGCCGAGCCG
CACCAGCGCGCTGCCCAAACGCTGCAGCCGCATCAACGCGCAGTCATTCT
CGGCGCTGCCATTGCCATCGACTTTGGTAAGTTGCCTACTTTCGCACACG
CCGGTCGACGTTCTCGTGCTGCCTGTTGACAACTAACATCACCCCCTGGT
ACGTGACCATATCGCCTTGAACAGATTATTTCAGTCTTCATAGTCGCGGC
CCGGGGCCCGGAATCATGATGATGCCTCCTATTGGAGCACCCACACCGGC
CCCGGGTGTTCCACCGGGCGTTGGCGCTGGCGCTGGAGCCGGCGCTGCCG
CCGCTGGTGCTGATGCAGGTACCGCTGTGGGTGCTGATGTTTTGTCCGAT
GCCATGGGCGCATCTGCATCAGACTCTGAAACGCCATATCAAATTCCCCA
GGAACAGTTGAACAAAGATTCTTCACACGCATCCTCCCAATCAGACAGGT
GGGGCGATGAGGAGCCATTCGAGCAAGACCAGTTTGCCAATTCAAGCCAG
GCTGACAATGCCGACCAGTCGCAATGGGCCACGTTTGAAGAGCCAGATCA
TGGGTTTGATGACCCATACGCGGACAACGACGCATGGAATGCAGACAGTG
ACACTTGGGGCGCCGGAGACGGGGGTGGCGACGAAGAAGGCGGCGGCCTA
GGGGGCTTATTCGGTATTATCAAGGGGATCTTTTTCGATGATGATTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:139255..140902-

>Gvermi11420.t1 ID=Gvermi11420.t1|Name=Gvermi11420.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1455bp|location=Sequence derived from alignment at ScGOVlb_3404:139255..140902- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGCCGCGCACTGTTCGCACGCTGCCCATCTCTGCGTGCGTCTTGGCG
CCGTTTCTCGTCCTGCACTCCGCCCCGCTTCCGCAATGCTCCAACACCCA
CGCACAGCCACTTTGCCATCCTCCGCACCCTCGCCCCGCCGCCCCTCCCC
GCCCCGTCTGCATTGCCCAGCTGCAGCACACTGTCGCCCACTCGCTCGCG
ATCGCTGTGCACCCCCGACCCCAACCCCGTGTCTAAACCGCATGCCATTC
AACCGGCCTCTCCCGCTGACCTCGTCCTCTCTCCTCCAGCTCTGGTCGTC
ACCCGCGAGTACGAGTGGGCCAACATCATTGTCGGCTTCGAACAAGCAAA
CAAATATACCATACGTGCCGCGCCTGCAGGCCACGTAGTCGGCTACATTG
CAGAACAAGCGTCGCTCGGCAGTGCAATCACCAGAAATGTACTTCGCACC
CGACGCCCGTTTAAGGCCACTGTCTTTGACAAAGATCGAAACATCATCTT
TCAAATACGCCGTCCGCTCTACCTCCTATCAACCTCCATATTCGTCGAAA
CCCCCGACGGCCAGCCCATCGGCGAGGTGCACATGAACTGGCACCTGTGG
AAGAGAAGGTACAGTCTGTACGTCCACAAAACCCAGTTTGCCGTCGTCGA
CTCCGGCTTTCTGGCCGTCGACTTCGACATGCGCGACGTGCACGGCAAAA
CAATCGCCTCGGTCAACAAGGACTTTACGGGCTTTGCGCGCGAGCTGTTC
ACCGATGCGCGCCAGTACGTGCTGCGCATGGACCCGTCGTACGGCCTGGA
GCACGATGCGTCGCTCATCTACGACGCTGCCACAGTGCGCGCCCCTGCCG
AGCCGCACCAGCGCGCTGCCCAAACGCTGCAGCCGCATCAACGCGCAGTC
ATTCTCGGCGCTGCCATTGCCATCGACTTTGATTATTTCAGTCTTCATAG
TCGCGGCCCGGGGCCCGGAATCATGATGATGCCTCCTATTGGAGCACCCA
CACCGGCCCCGGGTGTTCCACCGGGCGTTGGCGCTGGCGCTGGAGCCGGC
GCTGCCGCCGCTGGTGCTGATGCAGGTACCGCTGTGGGTGCTGATGTTTT
GTCCGATGCCATGGGCGCATCTGCATCAGACTCTGAAACGCCATATCAAA
TTCCCCAGGAACAGTTGAACAAAGATTCTTCACACGCATCCTCCCAATCA
GACAGGTGGGGCGATGAGGAGCCATTCGAGCAAGACCAGTTTGCCAATTC
AAGCCAGGCTGACAATGCCGACCAGTCGCAATGGGCCACGTTTGAAGAGC
CAGATCATGGGTTTGATGACCCATACGCGGACAACGACGCATGGAATGCA
GACAGTGACACTTGGGGCGCCGGAGACGGGGGTGGCGACGAAGAAGGCGG
CGGCCTAGGGGGCTTATTCGGTATTATCAAGGGGATCTTTTTCGATGATG
ATTAG
back to top