Gvermi11417.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11417.t1
Unique NameGvermi11417.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:104710..105713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog349521.HCH_00711
Max annot lvl135619|Oceanospirillales
Evalue1.77e-14
EggNOG OGsCOG2267@1|root,COG2267@2|Bacteria,1N0W6@1224|Proteobacteria,1S931@1236|Gammaproteobacteria,1XM7P@135619|Oceanospirillales
Descriptioncarboxylic ester hydrolase activity
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11417Gvermi11417Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 104710..105713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11417.t1Gvermi11417.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 104710..105713 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11417.t1.stop1Gvermi11417.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 104710..104712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11417.t1.CDS1Gvermi11417.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 104710..105503 -
Gvermi11417.t1.CDS2Gvermi11417.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 105590..105713 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11417.t1.exon1Gvermi11417.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 104710..105503 -
Gvermi11417.t1.exon2Gvermi11417.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 105590..105713 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11417.t1.intron1Gvermi11417.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 105504..105589 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11417.t1.start1Gvermi11417.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 105711..105713 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11417.t1 ID=Gvermi11417.t1|Name=Gvermi11417.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=306bp
MFTAFLALPSLPRSKRPIRHRAAVTMTRPTSSILPRIVVLPGLDGTDLLL
DPFRKQLCASDDPNRVIAVDYPHDRILSVQEMASFVHDNYLTQLEHDKRG
YVVVNQSFSGHVGFHLARRKLPGLLQGQVFINSFVSPPGPAFLQSIPLGA
TTPFFKNLPPGWMVSRFFLGPNAEGMDRVQSQASRVQPEVMTHRLSLCLK
ENSWDLWRNRNVLLPSRTLYLRGDDDFLISRREAQQLRSARPDIFWVSIR
NGPHMLLQRYGTECAVAIDEFCTSLHKRYSSFEPFASGAAFSEKGEGISL
DTRSR*
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spliced messenger RNA

>Gvermi11417.t1 ID=Gvermi11417.t1|Name=Gvermi11417.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=918bp|location=Sequence derived from alignment at ScGOVlb_3404:104710..105713- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTACTGCATTTCTGGCACTGCCGTCGTTGCCTCGGTCTAAGCGACC
AATTCGCCACAGAGCTGCCGTGACGATGACGCGCCCGACCAGCTCAATAC
TTCCCCGTATCGTTGTGCTTCCAGGTTTAGATGGTACGGATCTCCTTCTA
GACCCTTTTCGCAAGCAGTTGTGTGCGTCCGATGACCCTAATCGAGTGAT
TGCAGTTGACTACCCCCATGACCGTATTCTCTCAGTGCAAGAGATGGCGT
CCTTCGTCCACGACAACTATTTGACACAACTCGAACACGACAAACGAGGC
TACGTGGTCGTGAATCAATCTTTTTCTGGGCACGTTGGTTTCCACCTGGC
TCGCCGCAAATTACCCGGATTGTTGCAGGGGCAAGTATTTATTAACTCTT
TTGTTTCCCCACCAGGTCCGGCATTCCTCCAAAGCATTCCATTAGGCGCG
ACGACTCCATTTTTCAAGAATCTGCCACCGGGATGGATGGTAAGTCGTTT
CTTCCTGGGACCAAACGCCGAGGGGATGGACCGTGTTCAGAGCCAGGCGT
CTCGCGTACAGCCAGAAGTCATGACTCATCGCCTCTCCCTTTGCCTGAAA
GAAAACTCATGGGACCTTTGGCGCAATCGCAACGTCCTTCTACCATCTCG
AACTCTGTATCTGCGGGGCGACGATGACTTTCTCATTTCAAGAAGAGAAG
CACAACAGCTGCGTTCTGCCCGACCAGACATATTTTGGGTCTCAATACGC
AATGGGCCGCACATGCTGCTCCAAAGGTACGGAACAGAATGTGCTGTTGC
CATAGATGAATTTTGCACCAGTTTGCACAAACGTTATTCATCTTTTGAGC
CTTTCGCTTCGGGCGCGGCTTTCTCGGAAAAAGGTGAGGGGATTAGTTTA
GACACCCGTTCTCGATAG
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protein sequence of Gvermi11417.t1

>Gvermi11417.t1 ID=Gvermi11417.t1|Name=Gvermi11417.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=306bp
MFTAFLALPSLPRSKRPIRHRAAVTMTRPTSSILPRIVVLPGLDGTDLLL
DPFRKQLCASDDPNRVIAVDYPHDRILSVQEMASFVHDNYLTQLEHDKRG
YVVVNQSFSGHVGFHLARRKLPGLLQGQVFINSFVSPPGPAFLQSIPLGA
TTPFFKNLPPGWMVSRFFLGPNAEGMDRVQSQASRVQPEVMTHRLSLCLK
ENSWDLWRNRNVLLPSRTLYLRGDDDFLISRREAQQLRSARPDIFWVSIR
NGPHMLLQRYGTECAVAIDEFCTSLHKRYSSFEPFASGAAFSEKGEGISL
DTRSR*
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mRNA from alignment at ScGOVlb_3404:104710..105713-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11417.t1 ID=Gvermi11417.t1|Name=Gvermi11417.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1004bp|location=Sequence derived from alignment at ScGOVlb_3404:104710..105713- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTACTGCATTTCTGGCACTGCCGTCGTTGCCTCGGTCTAAGCGACC
AATTCGCCACAGAGCTGCCGTGACGATGACGCGCCCGACCAGCTCAATAC
TTCCCCGTATCGTTGTGCTTCCAGGTGAGTTCAGCCGGGACTTCGTAACG
GACCTATCCCTTCAGCATCTGACAATGACAAATGCTCTCCGTTCCTTTTC
CTGCTTAAAGGTTTAGATGGTACGGATCTCCTTCTAGACCCTTTTCGCAA
GCAGTTGTGTGCGTCCGATGACCCTAATCGAGTGATTGCAGTTGACTACC
CCCATGACCGTATTCTCTCAGTGCAAGAGATGGCGTCCTTCGTCCACGAC
AACTATTTGACACAACTCGAACACGACAAACGAGGCTACGTGGTCGTGAA
TCAATCTTTTTCTGGGCACGTTGGTTTCCACCTGGCTCGCCGCAAATTAC
CCGGATTGTTGCAGGGGCAAGTATTTATTAACTCTTTTGTTTCCCCACCA
GGTCCGGCATTCCTCCAAAGCATTCCATTAGGCGCGACGACTCCATTTTT
CAAGAATCTGCCACCGGGATGGATGGTAAGTCGTTTCTTCCTGGGACCAA
ACGCCGAGGGGATGGACCGTGTTCAGAGCCAGGCGTCTCGCGTACAGCCA
GAAGTCATGACTCATCGCCTCTCCCTTTGCCTGAAAGAAAACTCATGGGA
CCTTTGGCGCAATCGCAACGTCCTTCTACCATCTCGAACTCTGTATCTGC
GGGGCGACGATGACTTTCTCATTTCAAGAAGAGAAGCACAACAGCTGCGT
TCTGCCCGACCAGACATATTTTGGGTCTCAATACGCAATGGGCCGCACAT
GCTGCTCCAAAGGTACGGAACAGAATGTGCTGTTGCCATAGATGAATTTT
GCACCAGTTTGCACAAACGTTATTCATCTTTTGAGCCTTTCGCTTCGGGC
GCGGCTTTCTCGGAAAAAGGTGAGGGGATTAGTTTAGACACCCGTTCTCG
ATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:104710..105713-

>Gvermi11417.t1 ID=Gvermi11417.t1|Name=Gvermi11417.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=918bp|location=Sequence derived from alignment at ScGOVlb_3404:104710..105713- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTTACTGCATTTCTGGCACTGCCGTCGTTGCCTCGGTCTAAGCGACC
AATTCGCCACAGAGCTGCCGTGACGATGACGCGCCCGACCAGCTCAATAC
TTCCCCGTATCGTTGTGCTTCCAGGTTTAGATGGTACGGATCTCCTTCTA
GACCCTTTTCGCAAGCAGTTGTGTGCGTCCGATGACCCTAATCGAGTGAT
TGCAGTTGACTACCCCCATGACCGTATTCTCTCAGTGCAAGAGATGGCGT
CCTTCGTCCACGACAACTATTTGACACAACTCGAACACGACAAACGAGGC
TACGTGGTCGTGAATCAATCTTTTTCTGGGCACGTTGGTTTCCACCTGGC
TCGCCGCAAATTACCCGGATTGTTGCAGGGGCAAGTATTTATTAACTCTT
TTGTTTCCCCACCAGGTCCGGCATTCCTCCAAAGCATTCCATTAGGCGCG
ACGACTCCATTTTTCAAGAATCTGCCACCGGGATGGATGGTAAGTCGTTT
CTTCCTGGGACCAAACGCCGAGGGGATGGACCGTGTTCAGAGCCAGGCGT
CTCGCGTACAGCCAGAAGTCATGACTCATCGCCTCTCCCTTTGCCTGAAA
GAAAACTCATGGGACCTTTGGCGCAATCGCAACGTCCTTCTACCATCTCG
AACTCTGTATCTGCGGGGCGACGATGACTTTCTCATTTCAAGAAGAGAAG
CACAACAGCTGCGTTCTGCCCGACCAGACATATTTTGGGTCTCAATACGC
AATGGGCCGCACATGCTGCTCCAAAGGTACGGAACAGAATGTGCTGTTGC
CATAGATGAATTTTGCACCAGTTTGCACAAACGTTATTCATCTTTTGAGC
CTTTCGCTTCGGGCGCGGCTTTCTCGGAAAAAGGTGAGGGGATTAGTTTA
GACACCCGTTCTCGATAG
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