Gvermi11412.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11412.t1
Unique NameGvermi11412.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length496
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:83522..85009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707608.1
Preferred nameSRP54
PFAMsSRP54,SRP54_N,SRP_SPB
Max annot lvl2759|Eukaryota
KEGG koko:K03106
KEGG TC3.A.5.1,3.A.5.2,3.A.5.7,3.A.5.8,3.A.5.9
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0003924,GO:0005048,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005786,GO:0005829,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006617,GO:0006810,GO:0006886,GO:0008104,GO:0008144,GO:0008150,GO:0008312,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019003,GO:0022607,GO:0030942,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034613,GO:0034622,GO:0035639,GO:0036094,GO:0042221,GO:0042277,GO:0042493,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0046907,GO:0048500,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055085,GO:0065002,GO:0065003,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:0097367,GO:1901265,GO:1901363,GO:1990904
Evalue4.24e-208
EggNOG OGsCOG0541@1|root,KOG0780@2759|Eukaryota
EC3.6.5.4
Description7S RNA binding
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000,ko02044
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11412Gvermi11412Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 83522..85009 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11412.t1.start1Gvermi11412.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 83522..83524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11412.t1.CDS1Gvermi11412.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 83522..85009 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11412.t1.exon1Gvermi11412.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 83522..85009 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11412.t1.stop1Gvermi11412.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 85007..85009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11412.t1Gvermi11412.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 83522..85009 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11412.t1 ID=Gvermi11412.t1|Name=Gvermi11412.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=496bp
MVLESLGSRITGALRKMTNSTVIDEEALKEMLKEITHALLEADVNIKNVA
QLRKNVTNRVKLEELAAGVNKRKLIQKAVFDELCSMLDPGTKPAVLKRGK
PNVVMFVGLQGNGKTTSCVKYAYYHQRKGWKPGLVCADTFRAGAFDQLKQ
NATKAKVPFIGSYTETDPVKIAADGVERFKNEKCDLIIVDTSGRHKQEEA
LFAEMEQMVEALNPTEIIFVMDSSIGQAAYDQALAFKNKVSVGSVIITKL
DGHAKGGGALSAVSATQSPITFIGTGEHMDEFEPFDTHAFVGRLLGMGDV
SGLVNTIKEAGLHENVEMYKRITEGVFTLRDMYDQLESISKLGPLNKVMG
MIPGMSEMMKNTNGVDGSVRIKRFQHIMDSMTMDEMENPKVTFTASRKER
IARGSGRHPQEVEELLVEYKRFSKVVGKVGKMSKKNMNIDQLSRNTSQTF
QQFMDPRMMAQLGGQGGMQSMMKQLAKSMDGKGGLGSLAGLKGLK*
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spliced messenger RNA

>Gvermi11412.t1 ID=Gvermi11412.t1|Name=Gvermi11412.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at ScGOVlb_3404:83522..85009+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGTTGGAGAGCCTGGGCAGCCGGATTACCGGTGCCCTTCGGAAGAT
GACCAACTCAACAGTCATCGACGAAGAGGCACTGAAGGAAATGCTTAAAG
AGATAACACACGCTCTTCTCGAGGCCGATGTAAACATCAAGAACGTTGCT
CAGCTGCGAAAGAATGTAACAAATCGAGTGAAACTGGAAGAGCTCGCAGC
AGGCGTCAATAAGCGAAAACTCATCCAAAAGGCTGTGTTTGATGAGCTTT
GCTCAATGCTTGATCCTGGGACAAAACCAGCTGTGCTAAAGCGCGGCAAA
CCGAACGTCGTGATGTTTGTGGGTCTCCAGGGTAATGGAAAGACCACTTC
TTGCGTCAAGTATGCGTACTATCACCAAAGAAAAGGTTGGAAACCTGGTC
TGGTTTGCGCTGATACTTTCCGTGCCGGTGCATTTGATCAGCTCAAACAA
AACGCGACAAAGGCGAAGGTTCCCTTCATTGGTTCGTATACGGAAACTGA
TCCCGTAAAGATTGCCGCTGACGGTGTGGAAAGATTCAAAAATGAAAAGT
GCGATTTGATCATCGTTGATACGTCCGGGCGACACAAACAGGAAGAGGCA
TTGTTTGCTGAAATGGAACAAATGGTCGAAGCATTGAACCCCACCGAAAT
CATTTTTGTTATGGATTCATCTATCGGCCAGGCTGCTTATGATCAAGCTC
TCGCATTTAAGAACAAGGTCAGCGTTGGTTCTGTTATCATCACCAAACTA
GACGGGCATGCGAAGGGAGGTGGTGCCCTCTCAGCTGTGTCGGCAACTCA
GTCGCCCATTACGTTCATTGGTACAGGTGAACATATGGATGAGTTTGAAC
CTTTTGACACACATGCTTTTGTCGGCAGACTGCTTGGTATGGGCGACGTC
TCGGGATTGGTGAATACCATCAAGGAGGCTGGTCTTCACGAGAATGTCGA
AATGTACAAGCGAATAACAGAAGGTGTGTTCACTTTGCGCGACATGTATG
ATCAATTGGAATCTATTTCGAAGCTAGGTCCTCTGAACAAGGTCATGGGT
ATGATTCCCGGTATGTCTGAAATGATGAAGAACACGAATGGCGTCGACGG
GTCAGTGCGGATAAAGCGTTTTCAACACATTATGGATTCAATGACTATGG
ACGAGATGGAAAACCCCAAGGTGACTTTTACGGCCAGTAGAAAAGAGCGG
ATAGCAAGAGGGAGCGGAAGACACCCACAAGAAGTAGAAGAACTGCTTGT
TGAATACAAGCGTTTTTCTAAGGTTGTCGGAAAGGTAGGTAAAATGTCAA
AAAAGAATATGAATATAGACCAACTTTCAAGGAACACATCCCAAACCTTC
CAGCAATTCATGGATCCTAGAATGATGGCACAGCTAGGTGGGCAGGGAGG
AATGCAGTCCATGATGAAACAGCTTGCAAAATCAATGGATGGGAAAGGAG
GTCTAGGGTCACTCGCCGGTCTGAAAGGGCTAAAATAG
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protein sequence of Gvermi11412.t1

>Gvermi11412.t1 ID=Gvermi11412.t1|Name=Gvermi11412.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=496bp
MVLESLGSRITGALRKMTNSTVIDEEALKEMLKEITHALLEADVNIKNVA
QLRKNVTNRVKLEELAAGVNKRKLIQKAVFDELCSMLDPGTKPAVLKRGK
PNVVMFVGLQGNGKTTSCVKYAYYHQRKGWKPGLVCADTFRAGAFDQLKQ
NATKAKVPFIGSYTETDPVKIAADGVERFKNEKCDLIIVDTSGRHKQEEA
LFAEMEQMVEALNPTEIIFVMDSSIGQAAYDQALAFKNKVSVGSVIITKL
DGHAKGGGALSAVSATQSPITFIGTGEHMDEFEPFDTHAFVGRLLGMGDV
SGLVNTIKEAGLHENVEMYKRITEGVFTLRDMYDQLESISKLGPLNKVMG
MIPGMSEMMKNTNGVDGSVRIKRFQHIMDSMTMDEMENPKVTFTASRKER
IARGSGRHPQEVEELLVEYKRFSKVVGKVGKMSKKNMNIDQLSRNTSQTF
QQFMDPRMMAQLGGQGGMQSMMKQLAKSMDGKGGLGSLAGLKGLK*
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mRNA from alignment at ScGOVlb_3404:83522..85009+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11412.t1 ID=Gvermi11412.t1|Name=Gvermi11412.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1488bp|location=Sequence derived from alignment at ScGOVlb_3404:83522..85009+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGTTGGAGAGCCTGGGCAGCCGGATTACCGGTGCCCTTCGGAAGAT
GACCAACTCAACAGTCATCGACGAAGAGGCACTGAAGGAAATGCTTAAAG
AGATAACACACGCTCTTCTCGAGGCCGATGTAAACATCAAGAACGTTGCT
CAGCTGCGAAAGAATGTAACAAATCGAGTGAAACTGGAAGAGCTCGCAGC
AGGCGTCAATAAGCGAAAACTCATCCAAAAGGCTGTGTTTGATGAGCTTT
GCTCAATGCTTGATCCTGGGACAAAACCAGCTGTGCTAAAGCGCGGCAAA
CCGAACGTCGTGATGTTTGTGGGTCTCCAGGGTAATGGAAAGACCACTTC
TTGCGTCAAGTATGCGTACTATCACCAAAGAAAAGGTTGGAAACCTGGTC
TGGTTTGCGCTGATACTTTCCGTGCCGGTGCATTTGATCAGCTCAAACAA
AACGCGACAAAGGCGAAGGTTCCCTTCATTGGTTCGTATACGGAAACTGA
TCCCGTAAAGATTGCCGCTGACGGTGTGGAAAGATTCAAAAATGAAAAGT
GCGATTTGATCATCGTTGATACGTCCGGGCGACACAAACAGGAAGAGGCA
TTGTTTGCTGAAATGGAACAAATGGTCGAAGCATTGAACCCCACCGAAAT
CATTTTTGTTATGGATTCATCTATCGGCCAGGCTGCTTATGATCAAGCTC
TCGCATTTAAGAACAAGGTCAGCGTTGGTTCTGTTATCATCACCAAACTA
GACGGGCATGCGAAGGGAGGTGGTGCCCTCTCAGCTGTGTCGGCAACTCA
GTCGCCCATTACGTTCATTGGTACAGGTGAACATATGGATGAGTTTGAAC
CTTTTGACACACATGCTTTTGTCGGCAGACTGCTTGGTATGGGCGACGTC
TCGGGATTGGTGAATACCATCAAGGAGGCTGGTCTTCACGAGAATGTCGA
AATGTACAAGCGAATAACAGAAGGTGTGTTCACTTTGCGCGACATGTATG
ATCAATTGGAATCTATTTCGAAGCTAGGTCCTCTGAACAAGGTCATGGGT
ATGATTCCCGGTATGTCTGAAATGATGAAGAACACGAATGGCGTCGACGG
GTCAGTGCGGATAAAGCGTTTTCAACACATTATGGATTCAATGACTATGG
ACGAGATGGAAAACCCCAAGGTGACTTTTACGGCCAGTAGAAAAGAGCGG
ATAGCAAGAGGGAGCGGAAGACACCCACAAGAAGTAGAAGAACTGCTTGT
TGAATACAAGCGTTTTTCTAAGGTTGTCGGAAAGGTAGGTAAAATGTCAA
AAAAGAATATGAATATAGACCAACTTTCAAGGAACACATCCCAAACCTTC
CAGCAATTCATGGATCCTAGAATGATGGCACAGCTAGGTGGGCAGGGAGG
AATGCAGTCCATGATGAAACAGCTTGCAAAATCAATGGATGGGAAAGGAG
GTCTAGGGTCACTCGCCGGTCTGAAAGGGCTAAAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:83522..85009+

>Gvermi11412.t1 ID=Gvermi11412.t1|Name=Gvermi11412.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1488bp|location=Sequence derived from alignment at ScGOVlb_3404:83522..85009+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGTTGGAGAGCCTGGGCAGCCGGATTACCGGTGCCCTTCGGAAGAT
GACCAACTCAACAGTCATCGACGAAGAGGCACTGAAGGAAATGCTTAAAG
AGATAACACACGCTCTTCTCGAGGCCGATGTAAACATCAAGAACGTTGCT
CAGCTGCGAAAGAATGTAACAAATCGAGTGAAACTGGAAGAGCTCGCAGC
AGGCGTCAATAAGCGAAAACTCATCCAAAAGGCTGTGTTTGATGAGCTTT
GCTCAATGCTTGATCCTGGGACAAAACCAGCTGTGCTAAAGCGCGGCAAA
CCGAACGTCGTGATGTTTGTGGGTCTCCAGGGTAATGGAAAGACCACTTC
TTGCGTCAAGTATGCGTACTATCACCAAAGAAAAGGTTGGAAACCTGGTC
TGGTTTGCGCTGATACTTTCCGTGCCGGTGCATTTGATCAGCTCAAACAA
AACGCGACAAAGGCGAAGGTTCCCTTCATTGGTTCGTATACGGAAACTGA
TCCCGTAAAGATTGCCGCTGACGGTGTGGAAAGATTCAAAAATGAAAAGT
GCGATTTGATCATCGTTGATACGTCCGGGCGACACAAACAGGAAGAGGCA
TTGTTTGCTGAAATGGAACAAATGGTCGAAGCATTGAACCCCACCGAAAT
CATTTTTGTTATGGATTCATCTATCGGCCAGGCTGCTTATGATCAAGCTC
TCGCATTTAAGAACAAGGTCAGCGTTGGTTCTGTTATCATCACCAAACTA
GACGGGCATGCGAAGGGAGGTGGTGCCCTCTCAGCTGTGTCGGCAACTCA
GTCGCCCATTACGTTCATTGGTACAGGTGAACATATGGATGAGTTTGAAC
CTTTTGACACACATGCTTTTGTCGGCAGACTGCTTGGTATGGGCGACGTC
TCGGGATTGGTGAATACCATCAAGGAGGCTGGTCTTCACGAGAATGTCGA
AATGTACAAGCGAATAACAGAAGGTGTGTTCACTTTGCGCGACATGTATG
ATCAATTGGAATCTATTTCGAAGCTAGGTCCTCTGAACAAGGTCATGGGT
ATGATTCCCGGTATGTCTGAAATGATGAAGAACACGAATGGCGTCGACGG
GTCAGTGCGGATAAAGCGTTTTCAACACATTATGGATTCAATGACTATGG
ACGAGATGGAAAACCCCAAGGTGACTTTTACGGCCAGTAGAAAAGAGCGG
ATAGCAAGAGGGAGCGGAAGACACCCACAAGAAGTAGAAGAACTGCTTGT
TGAATACAAGCGTTTTTCTAAGGTTGTCGGAAAGGTAGGTAAAATGTCAA
AAAAGAATATGAATATAGACCAACTTTCAAGGAACACATCCCAAACCTTC
CAGCAATTCATGGATCCTAGAATGATGGCACAGCTAGGTGGGCAGGGAGG
AATGCAGTCCATGATGAAACAGCTTGCAAAATCAATGGATGGGAAAGGAG
GTCTAGGGTCACTCGCCGGTCTGAAAGGGCTAAAATAG
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