Gvermi11411.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11411.t1
Unique NameGvermi11411.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length299
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:81164..82159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3750.XP_008380614.1
PFAMsPkinase_Tyr
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0003824,GO:0004672,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564
Evalue8.31e-44
EggNOG OGsCOG0515@1|root,KOG0192@2759|Eukaryota,37JDM@33090|Viridiplantae,3G8BS@35493|Streptophyta,4JD5M@91835|fabids
DescriptionSerine threonine-protein kinase
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11411Gvermi11411Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 81164..82159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11411.t1Gvermi11411.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 81164..82159 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11411.t1.start1Gvermi11411.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 81164..81166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11411.t1.CDS1Gvermi11411.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 81164..81712 +
Gvermi11411.t1.CDS2Gvermi11411.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 81812..82159 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11411.t1.exon1Gvermi11411.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 81164..81712 +
Gvermi11411.t1.exon2Gvermi11411.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 81812..82159 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11411.t1.intron1Gvermi11411.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 81713..81811 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11411.t1.stop1Gvermi11411.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 82157..82159 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11411.t1 ID=Gvermi11411.t1|Name=Gvermi11411.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=299bp
MRPGMNSVCVPLQIYSSEDLKNSEVVAEGTTARVSQAFLHGLKVAVKALK
PLNEIEEALTRERAIADFEKELSINAQLRHPNIMLFIGCVRSKKLESLVF
EFCDGGRLKCSNYGPSKIRKGLAVCSGVARALCFAHGLNVIHRDVKPSQV
LLHGGVAKLGDWGLATYATEEDCTTGETGTWEFMAPEVIRHEKYGLPADV
YSFGMLMYCVITGLDFPYMEKYITPAQAAAGVVKHGLRPQLGSQIPEVVS
LIITNCWAAEPDARPSMTQVMSMLEKATDLCASKSASASNNWSTWIWG*
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spliced messenger RNA

>Gvermi11411.t1 ID=Gvermi11411.t1|Name=Gvermi11411.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=897bp|location=Sequence derived from alignment at ScGOVlb_3404:81164..82159+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGACCCGGAATGAATTCTGTTTGCGTACCGTTACAGATATACTCTTC
TGAAGATCTGAAGAACTCGGAGGTAGTAGCGGAGGGTACAACTGCCCGTG
TTTCTCAAGCTTTTCTGCATGGCCTGAAGGTGGCAGTCAAGGCACTAAAA
CCGCTTAACGAAATCGAGGAAGCGCTAACCCGAGAGCGTGCCATCGCGGA
CTTCGAGAAGGAGTTGAGTATAAACGCACAACTTCGACACCCCAATATTA
TGTTGTTCATTGGGTGCGTAAGATCAAAGAAACTTGAAAGTCTCGTATTC
GAGTTTTGCGACGGCGGCAGATTGAAGTGCTCAAATTACGGACCATCGAA
AATCCGGAAAGGATTGGCGGTCTGCTCAGGGGTAGCAAGGGCTTTGTGTT
TCGCCCACGGCTTAAATGTCATTCATCGCGACGTGAAACCCAGCCAAGTC
CTACTGCACGGTGGAGTGGCGAAACTCGGAGACTGGGGGCTCGCGACATA
CGCAACAGAAGAAGACTGTACGACGGGTGAAACAGGTACTTGGGAATTTA
TGGCTCCCGAAGTAATTCGCCACGAAAAATACGGACTGCCTGCTGATGTC
TACTCCTTCGGAATGCTAATGTACTGCGTCATTACTGGCCTAGATTTCCC
GTATATGGAAAAGTACATTACTCCAGCCCAAGCAGCAGCAGGTGTAGTGA
AGCACGGTTTGCGTCCACAACTGGGTTCTCAGATTCCAGAAGTGGTTTCT
CTCATTATCACAAACTGTTGGGCCGCAGAGCCTGACGCTCGACCATCAAT
GACGCAAGTGATGAGTATGTTAGAAAAGGCAACGGATTTGTGTGCTTCAA
AGTCGGCTTCTGCCTCAAATAATTGGTCGACATGGATTTGGGGATAA
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protein sequence of Gvermi11411.t1

>Gvermi11411.t1 ID=Gvermi11411.t1|Name=Gvermi11411.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=299bp
MRPGMNSVCVPLQIYSSEDLKNSEVVAEGTTARVSQAFLHGLKVAVKALK
PLNEIEEALTRERAIADFEKELSINAQLRHPNIMLFIGCVRSKKLESLVF
EFCDGGRLKCSNYGPSKIRKGLAVCSGVARALCFAHGLNVIHRDVKPSQV
LLHGGVAKLGDWGLATYATEEDCTTGETGTWEFMAPEVIRHEKYGLPADV
YSFGMLMYCVITGLDFPYMEKYITPAQAAAGVVKHGLRPQLGSQIPEVVS
LIITNCWAAEPDARPSMTQVMSMLEKATDLCASKSASASNNWSTWIWG*
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mRNA from alignment at ScGOVlb_3404:81164..82159+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11411.t1 ID=Gvermi11411.t1|Name=Gvermi11411.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=996bp|location=Sequence derived from alignment at ScGOVlb_3404:81164..82159+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGACCCGGAATGAATTCTGTTTGCGTACCGTTACAGATATACTCTTC
TGAAGATCTGAAGAACTCGGAGGTAGTAGCGGAGGGTACAACTGCCCGTG
TTTCTCAAGCTTTTCTGCATGGCCTGAAGGTGGCAGTCAAGGCACTAAAA
CCGCTTAACGAAATCGAGGAAGCGCTAACCCGAGAGCGTGCCATCGCGGA
CTTCGAGAAGGAGTTGAGTATAAACGCACAACTTCGACACCCCAATATTA
TGTTGTTCATTGGGTGCGTAAGATCAAAGAAACTTGAAAGTCTCGTATTC
GAGTTTTGCGACGGCGGCAGATTGAAGTGCTCAAATTACGGACCATCGAA
AATCCGGAAAGGATTGGCGGTCTGCTCAGGGGTAGCAAGGGCTTTGTGTT
TCGCCCACGGCTTAAATGTCATTCATCGCGACGTGAAACCCAGCCAAGTC
CTACTGCACGGTGGAGTGGCGAAACTCGGAGACTGGGGGCTCGCGACATA
CGCAACAGAAGAAGACTGTACGACGGGTGAAACAGGTACTTGGGAATTTG
TAAGTTGAAACAGACTGACCATGTCATCTTATCCTGGAGAATCACCCGCG
AGTGTCTTCTGGATTATCCTGACATTTGCCGCTCTCCTTTTTTGATAGAT
GGCTCCCGAAGTAATTCGCCACGAAAAATACGGACTGCCTGCTGATGTCT
ACTCCTTCGGAATGCTAATGTACTGCGTCATTACTGGCCTAGATTTCCCG
TATATGGAAAAGTACATTACTCCAGCCCAAGCAGCAGCAGGTGTAGTGAA
GCACGGTTTGCGTCCACAACTGGGTTCTCAGATTCCAGAAGTGGTTTCTC
TCATTATCACAAACTGTTGGGCCGCAGAGCCTGACGCTCGACCATCAATG
ACGCAAGTGATGAGTATGTTAGAAAAGGCAACGGATTTGTGTGCTTCAAA
GTCGGCTTCTGCCTCAAATAATTGGTCGACATGGATTTGGGGATAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:81164..82159+

>Gvermi11411.t1 ID=Gvermi11411.t1|Name=Gvermi11411.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=897bp|location=Sequence derived from alignment at ScGOVlb_3404:81164..82159+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGACCCGGAATGAATTCTGTTTGCGTACCGTTACAGATATACTCTTC
TGAAGATCTGAAGAACTCGGAGGTAGTAGCGGAGGGTACAACTGCCCGTG
TTTCTCAAGCTTTTCTGCATGGCCTGAAGGTGGCAGTCAAGGCACTAAAA
CCGCTTAACGAAATCGAGGAAGCGCTAACCCGAGAGCGTGCCATCGCGGA
CTTCGAGAAGGAGTTGAGTATAAACGCACAACTTCGACACCCCAATATTA
TGTTGTTCATTGGGTGCGTAAGATCAAAGAAACTTGAAAGTCTCGTATTC
GAGTTTTGCGACGGCGGCAGATTGAAGTGCTCAAATTACGGACCATCGAA
AATCCGGAAAGGATTGGCGGTCTGCTCAGGGGTAGCAAGGGCTTTGTGTT
TCGCCCACGGCTTAAATGTCATTCATCGCGACGTGAAACCCAGCCAAGTC
CTACTGCACGGTGGAGTGGCGAAACTCGGAGACTGGGGGCTCGCGACATA
CGCAACAGAAGAAGACTGTACGACGGGTGAAACAGGTACTTGGGAATTTA
TGGCTCCCGAAGTAATTCGCCACGAAAAATACGGACTGCCTGCTGATGTC
TACTCCTTCGGAATGCTAATGTACTGCGTCATTACTGGCCTAGATTTCCC
GTATATGGAAAAGTACATTACTCCAGCCCAAGCAGCAGCAGGTGTAGTGA
AGCACGGTTTGCGTCCACAACTGGGTTCTCAGATTCCAGAAGTGGTTTCT
CTCATTATCACAAACTGTTGGGCCGCAGAGCCTGACGCTCGACCATCAAT
GACGCAAGTGATGAGTATGTTAGAAAAGGCAACGGATTTGTGTGCTTCAA
AGTCGGCTTCTGCCTCAAATAATTGGTCGACATGGATTTGGGGATAA
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