Gvermi11404.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11404.t1
Unique NameGvermi11404.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length137
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:70525..70935 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705191.1
Preferred namePAM16
PFAMsDUF1899,Pam16,WD40,WD40_4
Max annot lvl2759|Eukaryota
KEGG koko:K17805,ko:K18619
GOsGO:0001405,GO:0001503,GO:0001700,GO:0002164,GO:0002165,GO:0002168,GO:0002237,GO:0002831,GO:0002832,GO:0003674,GO:0003779,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0005759,GO:0005794,GO:0005802,GO:0006139,GO:0006259,GO:0006605,GO:0006626,GO:0006725,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006892,GO:0006895,GO:0006996,GO:0007005,GO:0007010,GO:0007015,GO:0007275,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008154,GO:0008320,GO:0008565,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009617,GO:0009790,GO:0009791,GO:0009792,GO:0009892,GO:0009894,GO:0009895,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010605,GO:0010639,GO:0010646,GO:0010648,GO:0010817,GO:0010821,GO:0010823,GO:0010941,GO:0012505,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016482,GO:0017038,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019866,GO:0019898,GO:0019904,GO:0022607,GO:0022804,GO:0022857,GO:0022884,GO:0023051,GO:0023057,GO:0030029,GO:0030036,GO:0030041,GO:0030150,GO:0031090,GO:0031224,GO:0031312,GO:0031314,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031347,GO:0031348,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031984,GO:0032101,GO:0032102,GO:0032501,GO:0032502,GO:0032780,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042886,GO:0042887,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043462,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044431,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0045934,GO:0046483,GO:0046907,GO:0048193,GO:0048518,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051258,GO:0051336,GO:0051346,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0060255,GO:0060548,GO:0065002,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071897,GO:0072594,GO:0072655,GO:0080090,GO:0080134,GO:0090199,GO:0090201,GO:0090304,GO:0097435,GO:0098791,GO:0098796,GO:0098798,GO:0098800,GO:1900117,GO:1900118,GO:1900424,GO:1900425,GO:1901360,GO:1901362,GO:1901576,GO:1902007,GO:1902009,GO:1902288,GO:1902289,GO:1902510,GO:1902511,GO:1903624,GO:1903625,GO:1904680,GO:1990542,GO:2000012,GO:2000377,GO:2000378,GO:2001233,GO:2001234
Evalue2.19e-19
EggNOG OGsKOG3442@1|root,KOG3442@2759|Eukaryota
Descriptionprotein import into mitochondrial matrix
COG categoryS
BRITEko00000,ko03029,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11404Gvermi11404Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 70525..70935 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11404.t1.stop1Gvermi11404.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 70525..70527 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11404.t1.CDS1Gvermi11404.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 70525..70935 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11404.t1.exon1Gvermi11404.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 70525..70935 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11404.t1.start1Gvermi11404.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 70933..70935 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11404.t1Gvermi11404.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 70525..70935 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11404.t1 ID=Gvermi11404.t1|Name=Gvermi11404.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=137bp
MASRLIAQILLMGGTYVARAFVQAYQQALVNSARAGGASTPASRAAALRG
RMSADEAARILGVSQSAGLKDIYSRYDRLFHANDASKGGSTYLQAKIHFA
KVEMERIAMERGERMPEQQQQQQGARRGDDGGGDAR*
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spliced messenger RNA

>Gvermi11404.t1 ID=Gvermi11404.t1|Name=Gvermi11404.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=411bp|location=Sequence derived from alignment at ScGOVlb_3404:70525..70935- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGTCGACTCATCGCGCAAATTCTGCTCATGGGCGGCACGTATGT
GGCGCGCGCGTTCGTGCAGGCGTACCAGCAGGCGCTGGTCAACAGCGCGC
GCGCGGGCGGAGCGTCCACGCCGGCGTCGCGCGCCGCCGCGCTGCGCGGG
CGCATGAGCGCCGACGAGGCGGCGCGCATCCTCGGCGTGTCGCAGAGCGC
AGGGCTCAAGGACATTTACAGCCGTTACGACCGCCTGTTCCACGCCAACG
ACGCGTCGAAGGGCGGCAGCACGTACCTGCAGGCCAAGATTCACTTTGCA
AAGGTCGAGATGGAGCGCATCGCGATGGAGCGCGGCGAGCGCATGCCCGA
GCAGCAGCAGCAACAGCAGGGCGCGCGGCGCGGCGACGACGGCGGCGGCG
ATGCACGCTGA
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protein sequence of Gvermi11404.t1

>Gvermi11404.t1 ID=Gvermi11404.t1|Name=Gvermi11404.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=137bp
MASRLIAQILLMGGTYVARAFVQAYQQALVNSARAGGASTPASRAAALRG
RMSADEAARILGVSQSAGLKDIYSRYDRLFHANDASKGGSTYLQAKIHFA
KVEMERIAMERGERMPEQQQQQQGARRGDDGGGDAR*
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mRNA from alignment at ScGOVlb_3404:70525..70935-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11404.t1 ID=Gvermi11404.t1|Name=Gvermi11404.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=411bp|location=Sequence derived from alignment at ScGOVlb_3404:70525..70935- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCAGTCGACTCATCGCGCAAATTCTGCTCATGGGCGGCACGTATGT
GGCGCGCGCGTTCGTGCAGGCGTACCAGCAGGCGCTGGTCAACAGCGCGC
GCGCGGGCGGAGCGTCCACGCCGGCGTCGCGCGCCGCCGCGCTGCGCGGG
CGCATGAGCGCCGACGAGGCGGCGCGCATCCTCGGCGTGTCGCAGAGCGC
AGGGCTCAAGGACATTTACAGCCGTTACGACCGCCTGTTCCACGCCAACG
ACGCGTCGAAGGGCGGCAGCACGTACCTGCAGGCCAAGATTCACTTTGCA
AAGGTCGAGATGGAGCGCATCGCGATGGAGCGCGGCGAGCGCATGCCCGA
GCAGCAGCAGCAACAGCAGGGCGCGCGGCGCGGCGACGACGGCGGCGGCG
ATGCACGCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:70525..70935-

>Gvermi11404.t1 ID=Gvermi11404.t1|Name=Gvermi11404.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=411bp|location=Sequence derived from alignment at ScGOVlb_3404:70525..70935- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCCAGTCGACTCATCGCGCAAATTCTGCTCATGGGCGGCACGTATGT
GGCGCGCGCGTTCGTGCAGGCGTACCAGCAGGCGCTGGTCAACAGCGCGC
GCGCGGGCGGAGCGTCCACGCCGGCGTCGCGCGCCGCCGCGCTGCGCGGG
CGCATGAGCGCCGACGAGGCGGCGCGCATCCTCGGCGTGTCGCAGAGCGC
AGGGCTCAAGGACATTTACAGCCGTTACGACCGCCTGTTCCACGCCAACG
ACGCGTCGAAGGGCGGCAGCACGTACCTGCAGGCCAAGATTCACTTTGCA
AAGGTCGAGATGGAGCGCATCGCGATGGAGCGCGGCGAGCGCATGCCCGA
GCAGCAGCAGCAACAGCAGGGCGCGCGGCGCGGCGACGACGGCGGCGGCG
ATGCACGCTGA
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