Gvermi11402.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11402.t1
Unique NameGvermi11402.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length401
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:67497..68699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX53899
Preferred nameALAD
PFAMsALAD
Max annot lvl2759|Eukaryota
KEGG rclassRC00918,RC01781
KEGG koko:K01698,ko:K09490,ko:K09499
KEGG TC1.A.33
KEGG ReactionR00036
KEGG Pathwayko00860,ko01100,ko01110,ko01120,ko03060,ko04141,ko04918,ko05020,map00860,map01100,map01110,map01120,map03060,map04141,map04918,map05020
KEGG ModuleM00121
GOsGO:0001101,GO:0001666,GO:0001775,GO:0002237,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004655,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006725,GO:0006778,GO:0006779,GO:0006783,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006979,GO:0007584,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009314,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009635,GO:0009636,GO:0009719,GO:0009725,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010043,GO:0010044,GO:0010212,GO:0010243,GO:0010266,GO:0010269,GO:0010288,GO:0010605,GO:0012505,GO:0014070,GO:0014823,GO:0016043,GO:0016192,GO:0016829,GO:0016835,GO:0016836,GO:0018130,GO:0019222,GO:0019438,GO:0022607,GO:0030141,GO:0030162,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031667,GO:0031960,GO:0031974,GO:0031982,GO:0031983,GO:0032025,GO:0032268,GO:0032269,GO:0032496,GO:0032940,GO:0033013,GO:0033014,GO:0033197,GO:0033273,GO:0033993,GO:0034097,GO:0034641,GO:0034774,GO:0036230,GO:0036293,GO:0042119,GO:0042168,GO:0042176,GO:0042177,GO:0042221,GO:0042440,GO:0042493,GO:0042802,GO:0043167,GO:0043169,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043933,GO:0044085,GO:0044237,GO:0044249,GO:0044271,GO:0044421,GO:0044422,GO:0044424,GO:0044433,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045055,GO:0045321,GO:0045471,GO:0045861,GO:0046148,GO:0046483,GO:0046677,GO:0046685,GO:0046686,GO:0046689,GO:0046872,GO:0046903,GO:0046914,GO:0048519,GO:0048523,GO:0048545,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051246,GO:0051248,GO:0051259,GO:0051260,GO:0051384,GO:0051597,GO:0051704,GO:0051707,GO:0051716,GO:0060205,GO:0060255,GO:0061136,GO:0065003,GO:0065007,GO:0070013,GO:0070482,GO:0070541,GO:0070542,GO:0070670,GO:0070887,GO:0071241,GO:0071248,GO:0071284,GO:0071310,GO:0071345,GO:0071353,GO:0071704,GO:0071840,GO:0080090,GO:0097305,GO:0097708,GO:0099503,GO:0101002,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901698,GO:1901700,GO:1901799,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1904813,GO:1904854
Evalue2.4e-199
EggNOG OGsCOG0113@1|root,KOG2794@2759|Eukaryota
EC4.2.1.24
Descriptionporphobilinogen synthase activity
COG categoryH
BiGG ReactioniRC1080.CRv4_Au5_s2_g8620_t1
BRITEko00000,ko00001,ko00002,ko01000,ko03110,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11402Gvermi11402Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 67497..68699 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11402.t1.stop1Gvermi11402.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 67497..67499 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11402.t1.CDS1Gvermi11402.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 67497..68699 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11402.t1.exon1Gvermi11402.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 67497..68699 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11402.t1.start1Gvermi11402.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 68697..68699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11402.t1Gvermi11402.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 67497..68699 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11402.t1 ID=Gvermi11402.t1|Name=Gvermi11402.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=401bp
MVNLAFIGIPVTVGKSFCGDSLSDRKPLRRTNLSTPRAAAVTDRSVREPL
PNLRVNENGRIWVPQKSRPRRNRKNEGLRSMVRENVVLPSNFIYPLFIHT
KDHNEPIGSMPGCERHSVQSVIREVGEAHKLGVNSVVLFPKIPDSLKSNT
ADECFNPDGLVPEVISAIKMKYPKVSVWTDVALDPYSDQGHDGIVSSDSL
GDGGKGRILNDETVEQLCRQALCHARAGADVVSPSDMMDGRIGAIRDALD
SHGFTDVSIVSYCAKYASAFYGPFREALDSAPREDSNAPPNKKTYQMDPA
NSREALVEAALDVAEGADMLMVKPGLPFLDIIFRLKQETNLPIAAYHVSG
EYAMMKAAAEKGWLDEKSSVLESLLCFKRAGADAILTYYAKQAAQWMHES
*
back to top

spliced messenger RNA

>Gvermi11402.t1 ID=Gvermi11402.t1|Name=Gvermi11402.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at ScGOVlb_3404:67497..68699- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGAACCTTGCATTCATTGGAATACCAGTCACGGTCGGGAAGAGTTT
CTGCGGCGATTCACTCTCAGATCGCAAACCACTTCGTCGCACAAACCTCT
CAACTCCTCGCGCAGCTGCTGTAACCGACCGAAGCGTCAGAGAACCGCTT
CCGAATCTGCGAGTGAATGAAAACGGACGCATCTGGGTCCCTCAAAAAAG
CCGCCCTCGACGTAATCGGAAGAATGAAGGATTGCGGTCCATGGTTCGTG
AAAATGTTGTCTTGCCTTCCAACTTCATCTATCCACTATTTATTCATACT
AAGGACCACAACGAGCCGATTGGTTCTATGCCGGGCTGTGAGAGGCATTC
TGTACAAAGTGTAATTCGAGAAGTTGGTGAAGCCCATAAACTTGGTGTTA
ATTCCGTTGTGCTCTTTCCCAAGATTCCTGATTCTTTAAAGTCCAACACA
GCTGACGAATGTTTCAATCCTGACGGCTTGGTCCCGGAGGTTATTTCAGC
AATAAAGATGAAGTACCCAAAAGTGTCTGTATGGACTGACGTTGCTCTCG
ATCCGTACTCTGACCAGGGACATGACGGCATTGTTTCATCTGATAGTCTT
GGAGATGGCGGGAAAGGAAGAATTCTTAACGATGAAACAGTCGAGCAGCT
TTGTAGACAAGCTCTATGTCACGCACGGGCTGGTGCTGATGTGGTCTCCC
CTTCAGACATGATGGATGGCAGAATAGGCGCCATTCGAGATGCACTGGAT
TCCCATGGTTTCACAGATGTTTCAATCGTGTCCTATTGCGCAAAATACGC
CTCGGCCTTCTACGGCCCATTCAGAGAAGCTCTTGATTCCGCACCAAGAG
AAGATTCTAATGCACCTCCCAACAAAAAGACGTATCAAATGGACCCGGCA
AATTCGAGGGAGGCTTTGGTTGAAGCTGCTCTGGATGTCGCCGAAGGTGC
TGACATGCTAATGGTCAAACCGGGGCTCCCGTTTCTCGACATCATCTTTC
GGTTGAAGCAGGAGACGAATTTGCCCATTGCGGCTTACCATGTTAGTGGC
GAATATGCGATGATGAAGGCTGCGGCGGAGAAGGGTTGGTTAGATGAGAA
GAGTTCTGTGCTTGAATCGCTTCTTTGCTTCAAGCGTGCAGGGGCTGATG
CAATTTTGACATACTACGCAAAGCAGGCAGCTCAATGGATGCACGAGTCG
TGA
back to top

protein sequence of Gvermi11402.t1

>Gvermi11402.t1 ID=Gvermi11402.t1|Name=Gvermi11402.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=401bp
MVNLAFIGIPVTVGKSFCGDSLSDRKPLRRTNLSTPRAAAVTDRSVREPL
PNLRVNENGRIWVPQKSRPRRNRKNEGLRSMVRENVVLPSNFIYPLFIHT
KDHNEPIGSMPGCERHSVQSVIREVGEAHKLGVNSVVLFPKIPDSLKSNT
ADECFNPDGLVPEVISAIKMKYPKVSVWTDVALDPYSDQGHDGIVSSDSL
GDGGKGRILNDETVEQLCRQALCHARAGADVVSPSDMMDGRIGAIRDALD
SHGFTDVSIVSYCAKYASAFYGPFREALDSAPREDSNAPPNKKTYQMDPA
NSREALVEAALDVAEGADMLMVKPGLPFLDIIFRLKQETNLPIAAYHVSG
EYAMMKAAAEKGWLDEKSSVLESLLCFKRAGADAILTYYAKQAAQWMHES
*
back to top

mRNA from alignment at ScGOVlb_3404:67497..68699-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11402.t1 ID=Gvermi11402.t1|Name=Gvermi11402.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1203bp|location=Sequence derived from alignment at ScGOVlb_3404:67497..68699- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGAACCTTGCATTCATTGGAATACCAGTCACGGTCGGGAAGAGTTT
CTGCGGCGATTCACTCTCAGATCGCAAACCACTTCGTCGCACAAACCTCT
CAACTCCTCGCGCAGCTGCTGTAACCGACCGAAGCGTCAGAGAACCGCTT
CCGAATCTGCGAGTGAATGAAAACGGACGCATCTGGGTCCCTCAAAAAAG
CCGCCCTCGACGTAATCGGAAGAATGAAGGATTGCGGTCCATGGTTCGTG
AAAATGTTGTCTTGCCTTCCAACTTCATCTATCCACTATTTATTCATACT
AAGGACCACAACGAGCCGATTGGTTCTATGCCGGGCTGTGAGAGGCATTC
TGTACAAAGTGTAATTCGAGAAGTTGGTGAAGCCCATAAACTTGGTGTTA
ATTCCGTTGTGCTCTTTCCCAAGATTCCTGATTCTTTAAAGTCCAACACA
GCTGACGAATGTTTCAATCCTGACGGCTTGGTCCCGGAGGTTATTTCAGC
AATAAAGATGAAGTACCCAAAAGTGTCTGTATGGACTGACGTTGCTCTCG
ATCCGTACTCTGACCAGGGACATGACGGCATTGTTTCATCTGATAGTCTT
GGAGATGGCGGGAAAGGAAGAATTCTTAACGATGAAACAGTCGAGCAGCT
TTGTAGACAAGCTCTATGTCACGCACGGGCTGGTGCTGATGTGGTCTCCC
CTTCAGACATGATGGATGGCAGAATAGGCGCCATTCGAGATGCACTGGAT
TCCCATGGTTTCACAGATGTTTCAATCGTGTCCTATTGCGCAAAATACGC
CTCGGCCTTCTACGGCCCATTCAGAGAAGCTCTTGATTCCGCACCAAGAG
AAGATTCTAATGCACCTCCCAACAAAAAGACGTATCAAATGGACCCGGCA
AATTCGAGGGAGGCTTTGGTTGAAGCTGCTCTGGATGTCGCCGAAGGTGC
TGACATGCTAATGGTCAAACCGGGGCTCCCGTTTCTCGACATCATCTTTC
GGTTGAAGCAGGAGACGAATTTGCCCATTGCGGCTTACCATGTTAGTGGC
GAATATGCGATGATGAAGGCTGCGGCGGAGAAGGGTTGGTTAGATGAGAA
GAGTTCTGTGCTTGAATCGCTTCTTTGCTTCAAGCGTGCAGGGGCTGATG
CAATTTTGACATACTACGCAAAGCAGGCAGCTCAATGGATGCACGAGTCG
TGA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:67497..68699-

>Gvermi11402.t1 ID=Gvermi11402.t1|Name=Gvermi11402.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1203bp|location=Sequence derived from alignment at ScGOVlb_3404:67497..68699- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGAACCTTGCATTCATTGGAATACCAGTCACGGTCGGGAAGAGTTT
CTGCGGCGATTCACTCTCAGATCGCAAACCACTTCGTCGCACAAACCTCT
CAACTCCTCGCGCAGCTGCTGTAACCGACCGAAGCGTCAGAGAACCGCTT
CCGAATCTGCGAGTGAATGAAAACGGACGCATCTGGGTCCCTCAAAAAAG
CCGCCCTCGACGTAATCGGAAGAATGAAGGATTGCGGTCCATGGTTCGTG
AAAATGTTGTCTTGCCTTCCAACTTCATCTATCCACTATTTATTCATACT
AAGGACCACAACGAGCCGATTGGTTCTATGCCGGGCTGTGAGAGGCATTC
TGTACAAAGTGTAATTCGAGAAGTTGGTGAAGCCCATAAACTTGGTGTTA
ATTCCGTTGTGCTCTTTCCCAAGATTCCTGATTCTTTAAAGTCCAACACA
GCTGACGAATGTTTCAATCCTGACGGCTTGGTCCCGGAGGTTATTTCAGC
AATAAAGATGAAGTACCCAAAAGTGTCTGTATGGACTGACGTTGCTCTCG
ATCCGTACTCTGACCAGGGACATGACGGCATTGTTTCATCTGATAGTCTT
GGAGATGGCGGGAAAGGAAGAATTCTTAACGATGAAACAGTCGAGCAGCT
TTGTAGACAAGCTCTATGTCACGCACGGGCTGGTGCTGATGTGGTCTCCC
CTTCAGACATGATGGATGGCAGAATAGGCGCCATTCGAGATGCACTGGAT
TCCCATGGTTTCACAGATGTTTCAATCGTGTCCTATTGCGCAAAATACGC
CTCGGCCTTCTACGGCCCATTCAGAGAAGCTCTTGATTCCGCACCAAGAG
AAGATTCTAATGCACCTCCCAACAAAAAGACGTATCAAATGGACCCGGCA
AATTCGAGGGAGGCTTTGGTTGAAGCTGCTCTGGATGTCGCCGAAGGTGC
TGACATGCTAATGGTCAAACCGGGGCTCCCGTTTCTCGACATCATCTTTC
GGTTGAAGCAGGAGACGAATTTGCCCATTGCGGCTTACCATGTTAGTGGC
GAATATGCGATGATGAAGGCTGCGGCGGAGAAGGGTTGGTTAGATGAGAA
GAGTTCTGTGCTTGAATCGCTTCTTTGCTTCAAGCGTGCAGGGGCTGATG
CAATTTTGACATACTACGCAAAGCAGGCAGCTCAATGGATGCACGAGTCG
TGA
back to top