Gvermi11391.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11391.t1
Unique NameGvermi11391.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:45409..46356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERN10377
PFAMsADK,DUF1995
Max annot lvl35493|Streptophyta
KEGG rclassRC00002
KEGG koko:K00939
KEGG ReactionR00127,R01547,R11319
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG ModuleM00049
GOsGO:0003674,GO:0003824,GO:0004017,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009117,GO:0009123,GO:0009165,GO:0009507,GO:0009526,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009941,GO:0009987,GO:0016020,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0034641,GO:0034654,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046940,GO:0050145,GO:0055035,GO:0055086,GO:0071704,GO:0090407,GO:1901293,GO:1901360,GO:1901362,GO:1901576
Evalue1.98e-23
EggNOG OGsCOG0563@1|root,KOG3078@2759|Eukaryota,37HGK@33090|Viridiplantae,3GDCM@35493|Streptophyta
EC2.7.4.3
DescriptionBelongs to the adenylate kinase family
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11391Gvermi11391Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 45409..46356 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11391.t1.start1Gvermi11391.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 45409..45411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11391.t1.CDS1Gvermi11391.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 45409..46356 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11391.t1.exon1Gvermi11391.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 45409..46356 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11391.t1.stop1Gvermi11391.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 46354..46356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11391.t1Gvermi11391.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 45409..46356 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11391.t1 ID=Gvermi11391.t1|Name=Gvermi11391.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=316bp
MDRAVRQQYLNDAGAAFESYLHSFLSNPSSVSRLAQLTLLLPELNPLLDV
YDRRFLLQFTWTLLRVTASLGLRACVLTQGARLFGAMPLSVAGLRRNFEA
DLELSRSEWPENSVLSRELEDLEAIGENVDIVLVLSPTNAVSIPAVESVM
NLVQHFKDKPITLVNPRLEEVPSHSGVMQVQGRRTRLALLESFEDIFYMR
LLFDSGKNYPLRGILYKAYPSQWQAWYCPSDDEYVLALELEQKPDLAKVS
DVFRKKQYQIQKQKMAQSGDEVAIEQLLLSPPVIAGFILLVAFLIYKEGG
DSLPTLWNSLRSTDP*
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spliced messenger RNA

>Gvermi11391.t1 ID=Gvermi11391.t1|Name=Gvermi11391.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=948bp|location=Sequence derived from alignment at ScGOVlb_3404:45409..46356+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCGAGCTGTTCGCCAGCAATATCTCAATGACGCGGGAGCCGCATT
TGAGTCTTATTTGCATTCATTCTTAAGTAATCCATCGAGCGTATCTCGAT
TAGCACAGCTGACTCTTTTGTTACCGGAACTTAACCCACTTCTCGATGTG
TATGACCGTCGCTTTCTTTTGCAGTTCACATGGACGTTGTTGAGAGTCAC
TGCATCGCTTGGTCTTCGGGCATGCGTTCTTACTCAAGGGGCCCGTCTCT
TTGGAGCGATGCCACTCTCCGTTGCTGGCTTGCGCCGAAATTTTGAGGCC
GACTTGGAGCTTTCTCGTTCTGAATGGCCCGAGAATTCTGTTTTGTCCCG
AGAGCTAGAAGATTTGGAAGCCATAGGTGAAAATGTCGATATCGTTCTTG
TTCTATCTCCTACGAATGCTGTCTCTATTCCCGCGGTGGAGAGCGTTATG
AACCTTGTCCAACATTTCAAAGACAAACCTATCACCCTTGTCAATCCTCG
CCTTGAGGAGGTGCCCAGTCATAGTGGTGTCATGCAAGTCCAAGGTCGAA
GAACCAGACTAGCTTTGTTGGAAAGTTTTGAAGATATCTTTTATATGCGT
CTTCTCTTTGATTCTGGAAAGAACTATCCGTTGCGCGGTATACTGTATAA
GGCTTATCCTTCTCAGTGGCAAGCGTGGTATTGTCCATCAGATGATGAGT
ACGTCCTGGCATTGGAATTGGAACAAAAGCCAGACCTCGCTAAAGTAAGC
GACGTATTCCGGAAAAAACAGTATCAGATACAGAAACAGAAAATGGCCCA
GAGCGGCGATGAGGTCGCAATTGAGCAGTTGCTTCTCTCCCCCCCTGTAA
TAGCAGGTTTTATTTTGCTTGTCGCGTTCCTCATTTACAAAGAAGGTGGG
GATAGTTTACCTACATTGTGGAATTCGCTTAGAAGTACTGACCCTTGA
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protein sequence of Gvermi11391.t1

>Gvermi11391.t1 ID=Gvermi11391.t1|Name=Gvermi11391.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=316bp
MDRAVRQQYLNDAGAAFESYLHSFLSNPSSVSRLAQLTLLLPELNPLLDV
YDRRFLLQFTWTLLRVTASLGLRACVLTQGARLFGAMPLSVAGLRRNFEA
DLELSRSEWPENSVLSRELEDLEAIGENVDIVLVLSPTNAVSIPAVESVM
NLVQHFKDKPITLVNPRLEEVPSHSGVMQVQGRRTRLALLESFEDIFYMR
LLFDSGKNYPLRGILYKAYPSQWQAWYCPSDDEYVLALELEQKPDLAKVS
DVFRKKQYQIQKQKMAQSGDEVAIEQLLLSPPVIAGFILLVAFLIYKEGG
DSLPTLWNSLRSTDP*
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mRNA from alignment at ScGOVlb_3404:45409..46356+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11391.t1 ID=Gvermi11391.t1|Name=Gvermi11391.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=948bp|location=Sequence derived from alignment at ScGOVlb_3404:45409..46356+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATCGAGCTGTTCGCCAGCAATATCTCAATGACGCGGGAGCCGCATT
TGAGTCTTATTTGCATTCATTCTTAAGTAATCCATCGAGCGTATCTCGAT
TAGCACAGCTGACTCTTTTGTTACCGGAACTTAACCCACTTCTCGATGTG
TATGACCGTCGCTTTCTTTTGCAGTTCACATGGACGTTGTTGAGAGTCAC
TGCATCGCTTGGTCTTCGGGCATGCGTTCTTACTCAAGGGGCCCGTCTCT
TTGGAGCGATGCCACTCTCCGTTGCTGGCTTGCGCCGAAATTTTGAGGCC
GACTTGGAGCTTTCTCGTTCTGAATGGCCCGAGAATTCTGTTTTGTCCCG
AGAGCTAGAAGATTTGGAAGCCATAGGTGAAAATGTCGATATCGTTCTTG
TTCTATCTCCTACGAATGCTGTCTCTATTCCCGCGGTGGAGAGCGTTATG
AACCTTGTCCAACATTTCAAAGACAAACCTATCACCCTTGTCAATCCTCG
CCTTGAGGAGGTGCCCAGTCATAGTGGTGTCATGCAAGTCCAAGGTCGAA
GAACCAGACTAGCTTTGTTGGAAAGTTTTGAAGATATCTTTTATATGCGT
CTTCTCTTTGATTCTGGAAAGAACTATCCGTTGCGCGGTATACTGTATAA
GGCTTATCCTTCTCAGTGGCAAGCGTGGTATTGTCCATCAGATGATGAGT
ACGTCCTGGCATTGGAATTGGAACAAAAGCCAGACCTCGCTAAAGTAAGC
GACGTATTCCGGAAAAAACAGTATCAGATACAGAAACAGAAAATGGCCCA
GAGCGGCGATGAGGTCGCAATTGAGCAGTTGCTTCTCTCCCCCCCTGTAA
TAGCAGGTTTTATTTTGCTTGTCGCGTTCCTCATTTACAAAGAAGGTGGG
GATAGTTTACCTACATTGTGGAATTCGCTTAGAAGTACTGACCCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:45409..46356+

>Gvermi11391.t1 ID=Gvermi11391.t1|Name=Gvermi11391.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=948bp|location=Sequence derived from alignment at ScGOVlb_3404:45409..46356+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATCGAGCTGTTCGCCAGCAATATCTCAATGACGCGGGAGCCGCATT
TGAGTCTTATTTGCATTCATTCTTAAGTAATCCATCGAGCGTATCTCGAT
TAGCACAGCTGACTCTTTTGTTACCGGAACTTAACCCACTTCTCGATGTG
TATGACCGTCGCTTTCTTTTGCAGTTCACATGGACGTTGTTGAGAGTCAC
TGCATCGCTTGGTCTTCGGGCATGCGTTCTTACTCAAGGGGCCCGTCTCT
TTGGAGCGATGCCACTCTCCGTTGCTGGCTTGCGCCGAAATTTTGAGGCC
GACTTGGAGCTTTCTCGTTCTGAATGGCCCGAGAATTCTGTTTTGTCCCG
AGAGCTAGAAGATTTGGAAGCCATAGGTGAAAATGTCGATATCGTTCTTG
TTCTATCTCCTACGAATGCTGTCTCTATTCCCGCGGTGGAGAGCGTTATG
AACCTTGTCCAACATTTCAAAGACAAACCTATCACCCTTGTCAATCCTCG
CCTTGAGGAGGTGCCCAGTCATAGTGGTGTCATGCAAGTCCAAGGTCGAA
GAACCAGACTAGCTTTGTTGGAAAGTTTTGAAGATATCTTTTATATGCGT
CTTCTCTTTGATTCTGGAAAGAACTATCCGTTGCGCGGTATACTGTATAA
GGCTTATCCTTCTCAGTGGCAAGCGTGGTATTGTCCATCAGATGATGAGT
ACGTCCTGGCATTGGAATTGGAACAAAAGCCAGACCTCGCTAAAGTAAGC
GACGTATTCCGGAAAAAACAGTATCAGATACAGAAACAGAAAATGGCCCA
GAGCGGCGATGAGGTCGCAATTGAGCAGTTGCTTCTCTCCCCCCCTGTAA
TAGCAGGTTTTATTTTGCTTGTCGCGTTCCTCATTTACAAAGAAGGTGGG
GATAGTTTACCTACATTGTGGAATTCGCTTAGAAGTACTGACCCTTGA
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