Gvermi11388.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11388.t1
Unique NameGvermi11388.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:10713..11471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28564.XP_002340586.1
PFAMsPkinase
Max annot lvl4751|Fungi
Evalue4.03e-47
EggNOG OGs2AGKR@1|root,2RZ04@2759|Eukaryota,3A17F@33154|Opisthokonta,3P2CN@4751|Fungi,3R475@4890|Ascomycota,20S3P@147545|Eurotiomycetes,3SCXH@5042|Eurotiales
DescriptionLipopolysaccharide kinase (Kdo/WaaP) family
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11388Gvermi11388Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 10713..11471 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11388.t1.start1Gvermi11388.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 10713..10715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11388.t1.CDS1Gvermi11388.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 10713..11471 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11388.t1.exon1Gvermi11388.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 10713..11471 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11388.t1.stop1Gvermi11388.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 11469..11471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11388.t1Gvermi11388.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 10713..11471 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11388.t1 ID=Gvermi11388.t1|Name=Gvermi11388.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=253bp
MEILEKAELFSEGDERLFSHSVVVYRENGVLKIAESTRRAFGPSEIDPTS
WPSRLIPLDNVYPLCPEWVTKCIDCSLHEPIFVKRPSLLDYGCGREDDTR
NLLLTEVEFGEILRRNPHPNVAKYHGCEIRDGRIVGICWMRCNGSLEDHV
QRLTNVTTAHQWIDGIRKGVNHIHSLGYCHNDICPENILFADNESPVIID
FDSCRPAGAELSIKGGTPGWCDEDATLSLPENDHHSVYKVEQYILASLRQ
ET*
back to top

spliced messenger RNA

>Gvermi11388.t1 ID=Gvermi11388.t1|Name=Gvermi11388.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=759bp|location=Sequence derived from alignment at ScGOVlb_3404:10713..11471+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGATCCTCGAAAAAGCTGAGTTGTTTTCAGAAGGTGATGAGCGCTT
GTTCTCCCACTCCGTTGTCGTATATCGTGAAAATGGAGTACTGAAGATCG
CGGAATCAACGAGACGTGCTTTCGGTCCCAGTGAAATCGACCCAACGTCT
TGGCCAAGTCGATTAATTCCGTTGGATAACGTTTACCCGTTGTGCCCAGA
ATGGGTCACGAAGTGCATCGATTGCAGTTTGCATGAACCGATTTTTGTCA
AACGCCCATCACTCTTAGACTACGGTTGTGGCCGTGAGGATGACACTCGA
AACTTACTGCTTACCGAGGTTGAATTCGGGGAAATCTTAAGACGAAACCC
CCATCCCAATGTCGCAAAGTACCATGGGTGTGAGATTAGAGATGGCAGGA
TTGTTGGCATCTGTTGGATGCGTTGCAACGGATCACTGGAAGACCATGTA
CAACGTCTCACTAACGTGACGACAGCACATCAATGGATTGACGGAATTCG
CAAAGGTGTTAACCACATTCACTCTCTTGGATATTGTCATAATGATATAT
GTCCGGAAAATATACTTTTCGCAGATAACGAATCCCCAGTGATTATCGAC
TTCGACTCGTGCCGTCCAGCTGGAGCGGAGCTTAGTATTAAGGGAGGCAC
CCCTGGGTGGTGTGATGAGGACGCCACACTGTCATTGCCAGAGAACGATC
ATCACAGCGTTTACAAGGTGGAGCAATATATTTTGGCTAGCTTACGACAA
GAAACCTAG
back to top

protein sequence of Gvermi11388.t1

>Gvermi11388.t1 ID=Gvermi11388.t1|Name=Gvermi11388.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=253bp
MEILEKAELFSEGDERLFSHSVVVYRENGVLKIAESTRRAFGPSEIDPTS
WPSRLIPLDNVYPLCPEWVTKCIDCSLHEPIFVKRPSLLDYGCGREDDTR
NLLLTEVEFGEILRRNPHPNVAKYHGCEIRDGRIVGICWMRCNGSLEDHV
QRLTNVTTAHQWIDGIRKGVNHIHSLGYCHNDICPENILFADNESPVIID
FDSCRPAGAELSIKGGTPGWCDEDATLSLPENDHHSVYKVEQYILASLRQ
ET*
back to top

mRNA from alignment at ScGOVlb_3404:10713..11471+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11388.t1 ID=Gvermi11388.t1|Name=Gvermi11388.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=759bp|location=Sequence derived from alignment at ScGOVlb_3404:10713..11471+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGATCCTCGAAAAAGCTGAGTTGTTTTCAGAAGGTGATGAGCGCTT
GTTCTCCCACTCCGTTGTCGTATATCGTGAAAATGGAGTACTGAAGATCG
CGGAATCAACGAGACGTGCTTTCGGTCCCAGTGAAATCGACCCAACGTCT
TGGCCAAGTCGATTAATTCCGTTGGATAACGTTTACCCGTTGTGCCCAGA
ATGGGTCACGAAGTGCATCGATTGCAGTTTGCATGAACCGATTTTTGTCA
AACGCCCATCACTCTTAGACTACGGTTGTGGCCGTGAGGATGACACTCGA
AACTTACTGCTTACCGAGGTTGAATTCGGGGAAATCTTAAGACGAAACCC
CCATCCCAATGTCGCAAAGTACCATGGGTGTGAGATTAGAGATGGCAGGA
TTGTTGGCATCTGTTGGATGCGTTGCAACGGATCACTGGAAGACCATGTA
CAACGTCTCACTAACGTGACGACAGCACATCAATGGATTGACGGAATTCG
CAAAGGTGTTAACCACATTCACTCTCTTGGATATTGTCATAATGATATAT
GTCCGGAAAATATACTTTTCGCAGATAACGAATCCCCAGTGATTATCGAC
TTCGACTCGTGCCGTCCAGCTGGAGCGGAGCTTAGTATTAAGGGAGGCAC
CCCTGGGTGGTGTGATGAGGACGCCACACTGTCATTGCCAGAGAACGATC
ATCACAGCGTTTACAAGGTGGAGCAATATATTTTGGCTAGCTTACGACAA
GAAACCTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:10713..11471+

>Gvermi11388.t1 ID=Gvermi11388.t1|Name=Gvermi11388.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=759bp|location=Sequence derived from alignment at ScGOVlb_3404:10713..11471+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGATCCTCGAAAAAGCTGAGTTGTTTTCAGAAGGTGATGAGCGCTT
GTTCTCCCACTCCGTTGTCGTATATCGTGAAAATGGAGTACTGAAGATCG
CGGAATCAACGAGACGTGCTTTCGGTCCCAGTGAAATCGACCCAACGTCT
TGGCCAAGTCGATTAATTCCGTTGGATAACGTTTACCCGTTGTGCCCAGA
ATGGGTCACGAAGTGCATCGATTGCAGTTTGCATGAACCGATTTTTGTCA
AACGCCCATCACTCTTAGACTACGGTTGTGGCCGTGAGGATGACACTCGA
AACTTACTGCTTACCGAGGTTGAATTCGGGGAAATCTTAAGACGAAACCC
CCATCCCAATGTCGCAAAGTACCATGGGTGTGAGATTAGAGATGGCAGGA
TTGTTGGCATCTGTTGGATGCGTTGCAACGGATCACTGGAAGACCATGTA
CAACGTCTCACTAACGTGACGACAGCACATCAATGGATTGACGGAATTCG
CAAAGGTGTTAACCACATTCACTCTCTTGGATATTGTCATAATGATATAT
GTCCGGAAAATATACTTTTCGCAGATAACGAATCCCCAGTGATTATCGAC
TTCGACTCGTGCCGTCCAGCTGGAGCGGAGCTTAGTATTAAGGGAGGCAC
CCCTGGGTGGTGTGATGAGGACGCCACACTGTCATTGCCAGAGAACGATC
ATCACAGCGTTTACAAGGTGGAGCAATATATTTTGGCTAGCTTACGACAA
GAAACCTAG
back to top