Gvermi11262.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11262.t1
Unique NameGvermi11262.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length286
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_5337contigScGOVlb_5337:1..857 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX47850
PFAMsAcyl_transf_3
Max annot lvl2759|Eukaryota
Evalue5.25e-40
EggNOG OGs2C124@1|root,2S3C0@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11262Gvermi11262Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_5337 1..857 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11262.t1.CDS1Gvermi11262.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_5337 1..857 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11262.t1.exon1Gvermi11262.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_5337 1..857 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11262.t1.start1Gvermi11262.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_5337 855..857 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11262.t1Gvermi11262.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_5337 1..857 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11262.t1 ID=Gvermi11262.t1|Name=Gvermi11262.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=286bp
MMLSGFVLTYARVNSSDPTKREPWMTFTWKRVRGIYPLFLCGLLARAAQN
SILRNEPISLGTPFETVSLLLLLQAWFPTVVVHSIQAHCWFLSCIVPYWA
LHQTVYAKLRVARTRTLWFIALLVPLVPFLALTLIPPALGLSVTWYSTWD
GWTMRNGAHYLVAMLKFHPLFYFHIYLFGIVTALLMNRMNEHPQFVRTLF
RHGAFIGFGGLYLIFFASYWVVIPAYKLSCRLGVLAPLQGLYLIGLSLES
DFVAKVFSLSIFAPLENLSYPQYVFQFIAFSSWFAX
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spliced messenger RNA

>Gvermi11262.t1 ID=Gvermi11262.t1|Name=Gvermi11262.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=857bp|location=Sequence derived from alignment at ScGOVlb_5337:1..857- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCTCTCTGGTTTTGTGCTCACATATGCGCGCGTGAACAGCTCTGA
CCCCACCAAGCGCGAACCTTGGATGACATTTACCTGGAAGAGGGTCCGAG
GTATCTATCCGCTCTTTCTTTGTGGTCTCCTTGCTCGCGCCGCTCAAAAC
TCGATTCTTCGGAACGAACCGATTTCGCTCGGAACGCCCTTCGAAACGGT
TTCGCTGCTTTTGTTGCTCCAGGCGTGGTTTCCTACTGTTGTTGTGCACA
GTATCCAAGCCCACTGCTGGTTTCTCAGCTGCATTGTACCGTACTGGGCG
CTCCACCAAACCGTCTATGCGAAACTGCGTGTTGCTCGAACCCGAACATT
GTGGTTTATTGCCCTTCTTGTGCCGTTGGTTCCTTTTCTGGCTCTCACCC
TCATCCCGCCAGCTTTGGGCCTCTCCGTCACATGGTATTCGACATGGGAT
GGGTGGACGATGCGCAATGGGGCTCATTATTTGGTGGCGATGCTCAAGTT
CCACCCGTTGTTCTATTTCCACATCTACTTGTTCGGTATCGTCACGGCGC
TTTTGATGAACCGCATGAACGAGCATCCGCAGTTTGTTCGTACTCTATTT
CGCCATGGGGCTTTCATTGGATTCGGTGGGCTATACCTCATCTTCTTCGC
GTCCTACTGGGTTGTGATTCCTGCATACAAACTGAGCTGTCGGTTGGGTG
TACTCGCGCCGCTTCAAGGCTTATATCTCATTGGGCTCTCGCTTGAGTCA
GACTTTGTCGCAAAGGTGTTTTCGCTCTCTATATTTGCTCCTCTGGAGAA
TTTATCGTACCCTCAATACGTGTTCCAGTTCATCGCCTTCTCGTCGTGGT
TTGCGTG
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protein sequence of Gvermi11262.t1

>Gvermi11262.t1 ID=Gvermi11262.t1|Name=Gvermi11262.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=286bp
MMLSGFVLTYARVNSSDPTKREPWMTFTWKRVRGIYPLFLCGLLARAAQN
SILRNEPISLGTPFETVSLLLLLQAWFPTVVVHSIQAHCWFLSCIVPYWA
LHQTVYAKLRVARTRTLWFIALLVPLVPFLALTLIPPALGLSVTWYSTWD
GWTMRNGAHYLVAMLKFHPLFYFHIYLFGIVTALLMNRMNEHPQFVRTLF
RHGAFIGFGGLYLIFFASYWVVIPAYKLSCRLGVLAPLQGLYLIGLSLES
DFVAKVFSLSIFAPLENLSYPQYVFQFIAFSSWFAX
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mRNA from alignment at ScGOVlb_5337:1..857-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11262.t1 ID=Gvermi11262.t1|Name=Gvermi11262.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=857bp|location=Sequence derived from alignment at ScGOVlb_5337:1..857- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCTCTCTGGTTTTGTGCTCACATATGCGCGCGTGAACAGCTCTGA
CCCCACCAAGCGCGAACCTTGGATGACATTTACCTGGAAGAGGGTCCGAG
GTATCTATCCGCTCTTTCTTTGTGGTCTCCTTGCTCGCGCCGCTCAAAAC
TCGATTCTTCGGAACGAACCGATTTCGCTCGGAACGCCCTTCGAAACGGT
TTCGCTGCTTTTGTTGCTCCAGGCGTGGTTTCCTACTGTTGTTGTGCACA
GTATCCAAGCCCACTGCTGGTTTCTCAGCTGCATTGTACCGTACTGGGCG
CTCCACCAAACCGTCTATGCGAAACTGCGTGTTGCTCGAACCCGAACATT
GTGGTTTATTGCCCTTCTTGTGCCGTTGGTTCCTTTTCTGGCTCTCACCC
TCATCCCGCCAGCTTTGGGCCTCTCCGTCACATGGTATTCGACATGGGAT
GGGTGGACGATGCGCAATGGGGCTCATTATTTGGTGGCGATGCTCAAGTT
CCACCCGTTGTTCTATTTCCACATCTACTTGTTCGGTATCGTCACGGCGC
TTTTGATGAACCGCATGAACGAGCATCCGCAGTTTGTTCGTACTCTATTT
CGCCATGGGGCTTTCATTGGATTCGGTGGGCTATACCTCATCTTCTTCGC
GTCCTACTGGGTTGTGATTCCTGCATACAAACTGAGCTGTCGGTTGGGTG
TACTCGCGCCGCTTCAAGGCTTATATCTCATTGGGCTCTCGCTTGAGTCA
GACTTTGTCGCAAAGGTGTTTTCGCTCTCTATATTTGCTCCTCTGGAGAA
TTTATCGTACCCTCAATACGTGTTCCAGTTCATCGCCTTCTCGTCGTGGT
TTGCGTG
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Coding sequence (CDS) from alignment at ScGOVlb_5337:1..857-

>Gvermi11262.t1 ID=Gvermi11262.t1|Name=Gvermi11262.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=857bp|location=Sequence derived from alignment at ScGOVlb_5337:1..857- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCTCTCTGGTTTTGTGCTCACATATGCGCGCGTGAACAGCTCTGA
CCCCACCAAGCGCGAACCTTGGATGACATTTACCTGGAAGAGGGTCCGAG
GTATCTATCCGCTCTTTCTTTGTGGTCTCCTTGCTCGCGCCGCTCAAAAC
TCGATTCTTCGGAACGAACCGATTTCGCTCGGAACGCCCTTCGAAACGGT
TTCGCTGCTTTTGTTGCTCCAGGCGTGGTTTCCTACTGTTGTTGTGCACA
GTATCCAAGCCCACTGCTGGTTTCTCAGCTGCATTGTACCGTACTGGGCG
CTCCACCAAACCGTCTATGCGAAACTGCGTGTTGCTCGAACCCGAACATT
GTGGTTTATTGCCCTTCTTGTGCCGTTGGTTCCTTTTCTGGCTCTCACCC
TCATCCCGCCAGCTTTGGGCCTCTCCGTCACATGGTATTCGACATGGGAT
GGGTGGACGATGCGCAATGGGGCTCATTATTTGGTGGCGATGCTCAAGTT
CCACCCGTTGTTCTATTTCCACATCTACTTGTTCGGTATCGTCACGGCGC
TTTTGATGAACCGCATGAACGAGCATCCGCAGTTTGTTCGTACTCTATTT
CGCCATGGGGCTTTCATTGGATTCGGTGGGCTATACCTCATCTTCTTCGC
GTCCTACTGGGTTGTGATTCCTGCATACAAACTGAGCTGTCGGTTGGGTG
TACTCGCGCCGCTTCAAGGCTTATATCTCATTGGGCTCTCGCTTGAGTCA
GACTTTGTCGCAAAGGTGTTTTCGCTCTCTATATTTGCTCCTCTGGAGAA
TTTATCGTACCCTCAATACGTGTTCCAGTTCATCGCCTTCTCGTCGTGGT
TTGCGTG
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